FMO14284.5prime Sequence
974 bp (753 high quality bases) assembled on 2014-07-25
> FMO14284.5prime
TCAGTCGACATGCGGCCTTTTGGCAACGACATAACAAACATCCCGAACGG
TGGTAATAATGGTGGTAATAATGGTGGTAATAATGGCAACAACGATCCCA
ACGACGGCAACGACAACCGGAACACGAACATATCCAGTGAGGATCCCAGC
GAGGAGTCCGGACTATCGGACGATCCGAGTATTCCGCCGCATATAGCGAG
AATCGGCGGAATCGTTACCTGCCCCCCGATCGCTGGACAAGGAGTTATCC
GGGTGGTTCAGCGTTGCGAAGACGCCAAGGAGAACCACAAACTGGATCTT
TCAAGTTGTGAACTGATGCAAATACCAGATGCGGTATATCATCTTATGCG
AAACACAGAGTTGATCACCTGCAATCTCAGTGGCAATGTGCTCAAAAGCG
TTTCGCCCAAGTTTTCGCAAAAGTTTAGTACCATCACAGATCTTAATCTG
TCACACAACAAACTGTCGAGGCTGCCAGAAGAATTCGCCAGCTTGTCTGC
GCTAACCAAGCTGATATCTCGAACAATTCATTTATCGTTTTGCCACAAGT
AGTCTTTAAGCTTCAGAGTCTTGCCAGTCTGGATGCCCAGAACAATGCCA
TTTTGGAAATTGATACCGATGAGCAATTACCAGTGACAATTTGGCCTCGT
TGATCTTCGGAATAATCCGCTGAGCAGAAACTGCCGACGAAAGCTGCAGA
GCTTCAGACCCCTTCCACCTTGAGATTTCAAGATTGTCGAGACGACTGTT
TTGACAAAAGCGAGAATTACAGATGGACTCTCATTGGTTTGGGATTTCTC
AAATTACGATAGCACGAGAAGAGAGGACGCATAGTTACCCATGATGAGCA
TTGTTAGCATTAGACGCAATTACAGCTACAAAGTTGTTCATTGACTTTCG
TAAAGACTTCGATTTTTGATTGCAGCTCTTTTCAGCTCTTTGCTGAATTT
CAACGATTGGCTTAAATGGAATTC
FMO14284.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sclp-RC | 1766 | CG74-RC | 220..1200 | 10..953 | 3835 | 95 | Plus |
| Sclp-RA | 1102 | CG2471-RA | 220..965 | 10..748 | 3510 | 98.7 | Plus |
| Sclp-RB | 770 | CG2471-RB | 173..633 | 295..748 | 2085 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11924158..11924443 | 295..10 | 1430 | 100 | Minus |
| X | 23542271 | X | 11921998..11922168 | 606..437 | 805 | 99.4 | Minus |
| X | 23542271 | X | 11922230..11922374 | 439..295 | 725 | 100 | Minus |
| X | 23542271 | X | 11921808..11921932 | 726..606 | 430 | 95.2 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:31:15 has no hits.
FMO14284.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:12:16 Download gff for
FMO14284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sclp-RC | 220..1130 | 10..891 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:09:07 Download gff for
FMO14284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sclp-RC | 220..1130 | 10..891 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:09:07 Download gff for
FMO14284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11921808..11921931 | 607..726 | 96 | <- | Minus |
| X | 11921998..11922165 | 440..606 | 99 | <- | Minus |
| X | 11922230..11922373 | 296..439 | 100 | <- | Minus |
| X | 11924158..11924443 | 10..295 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:12:16 Download gff for
FMO14284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11815841..11815964 | 607..726 | 96 | <- | Minus |
| arm_X | 11816031..11816198 | 440..606 | 99 | <- | Minus |
| arm_X | 11816263..11816406 | 296..439 | 100 | <- | Minus |
| arm_X | 11818191..11818476 | 10..295 | 100 | | Minus |
