FMO14285.5prime Sequence
990 bp (847 high quality bases) assembled on 2014-07-25
> FMO14285.5prime
TCAGTCGACATGGAGAATCGCAGTGACTTCGAGGCGGATGACTACGGCGA
CATCAGTTGGAGCAATTGGAGCAACTGGAGCACCCCCGCCGGCGTCCTTT
TCTCGGCCATGAGCAGCGTGCTCTCGGCCAGCAACCATACGCCTCTGCCG
GACTTTGGCCAGGAGCTCGCCCTATCCACCAGCTCCTTCAATCACAGCCA
GACCCTATCCACCGACCTGCCCGCCGTCGGGGACGTGGAAGACGCGGCCG
AGGATGCGGCGGCGTCCATGGAGACGGGCTCGTTTGCATTTGTGGTCCCG
TGGTGGCGTCAGGTGCTCTGGAGCATCCTCTTCGGCGGCATGGTCATTGT
GGCGACGGGCGGTAACCTGATTGTTGTCTGGATCGTGATGACGACCAAGC
GGATGCGGACGGTAACCAACTATTTCATAGTGAATCTCTCCATCGCGGAC
GCCATGGTGTCCAGCCTGAACGTCACCTTCAACTACTACTATATGCTGGA
TAGCGACTGGCCCTTCGGCGAGTTCTACTGCAAGTTGTCCCAGTTCATCG
CGATGCTAAGCATCTGCGCCTCAGTGTTCACCCTAATGGCCATCTCCATC
GACAGATACGTGGGCCATCATCCGGCCACTGCAGCCGCGGATGAGCAAGC
GGTGCAACCTGGCCATCGCGGCGGTCATCTGGCTGGGCCTCCACGCTCAT
CTCCTGCCCCATGATGATCATCTACCGCACGGAGGAGGTGCCCGTCCGCG
GGCTCAGCAACGCACGGTCTGCTACCCGGAGTGCCCGATGGGCCCACCAA
TCACTCCACGATGGAAGTCCCTCTACAACATCCTCATCATCATTCTAACT
ACTCTGCCATCGTCTCCAATGACGGTCACCTACTCGCGCGTGGGCATCGA
GCTCTGGGGGATCCAAGAACCATTCGGCGAAGTGCCGCCCCCCCCCAGGT
GGAAAAATAGTTGCGGAAATAAACGAAAGGGGGTGGTGAA
FMO14285.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TkR99D-RC | 2880 | CG7887-RC | 613..1554 | 9..953 | 4345 | 98.1 | Plus |
| TkR99D-RB | 2874 | CG7887-RB | 613..1554 | 9..953 | 4345 | 98.1 | Plus |
| TkR99D-RA | 2880 | CG7887-RA | 613..1554 | 9..953 | 4345 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:31:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29959031..29959268 | 430..193 | 1145 | 98.7 | Minus |
| 3R | 32079331 | 3R | 29961689..29961883 | 203..9 | 975 | 100 | Minus |
| 3R | 32079331 | 3R | 29956535..29956711 | 605..429 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 29955035..29955238 | 815..613 | 875 | 98.5 | Minus |
| 3R | 32079331 | 3R | 29954115..29954204 | 909..823 | 240 | 94.5 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:31:56 has no hits.
FMO14285.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:12:36 Download gff for
FMO14285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takr99D-RA | 605..1554 | 1..953 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:09:30 Download gff for
FMO14285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TkR99D-RA | 605..1554 | 1..953 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:09:30 Download gff for
FMO14285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29954115..29954204 | 823..909 | 94 | <- | Minus |
| 3R | 29955029..29955244 | 606..822 | 97 | <- | Minus |
| 3R | 29956535..29956709 | 431..605 | 100 | <- | Minus |
| 3R | 29959031..29959257 | 204..430 | 100 | <- | Minus |
| 3R | 29961689..29961887 | 1..203 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:12:36 Download gff for
FMO14285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25779837..25779926 | 823..909 | 94 | <- | Minus |
| arm_3R | 25780751..25780966 | 606..822 | 97 | <- | Minus |
| arm_3R | 25782257..25782431 | 431..605 | 100 | <- | Minus |
| arm_3R | 25784753..25784979 | 204..430 | 100 | <- | Minus |
| arm_3R | 25787411..25787609 | 1..203 | 98 | | Minus |
