FMO14287.5prime Sequence
779 bp (738 high quality bases) assembled on 2014-07-25
> FMO14287.5prime
TCAGTCGACATGAGTACCGATACTTTGATAAAGGCTAAGGACTCCAGCCA
AATATTTATGGATCTGAAGAACCTGTTGTTATGGCGCAATAGCCGAAAGA
CTTTGATCGTCTTCACGGGCATCCTGCTCCTCCTGCTGGATGTGATGGTC
CACTCGGTGATCAGTGTGATAAGCATGGTAGGGATCACAGTTCTCATAGC
AGCTATTGGCCATCGCCTTTTGGTACAGTTCTGGAGTATCTGGAAGAAGG
ATGAGAACAAAGATCAGATCTTACGTTTCTATCCTCACCCGAAGATAGAA
ATCCCCCGGGAGGAGACTCTTTATCTGGCCGGGAAAGCAGTTTCCCATAT
TAATTTAATTTTAAACCGTATGATAGAATTGTTGCTGGTGGAAAAGTGGG
AGGATTCCTTGAAGTTCCTAGTTTTGCTCTGCGGCATCAATTTGCTGGGC
GATTGCTTCAACGGATTGACTTTGCTTATATTTGGACACTTGTTTATTTT
TACCGTACCAAAACTGTACGAGTCGTATAAGCCATTCGTTGATGTCCAGA
TCCGAAAGTTCCGTAAATGCAAGATAGATAAATCGAACGTTGAAAAACCG
ATTTGTATTCAGAAAGAGTGTCCGCCGGAGTCAGCATACGAGGGTCAGGA
ATCCAAAGAGGGCAAAGTACTATATGAGCATGCGATAATGAGCCACTTCG
AAATCTCTAGAGCTCACAAAGATGTCGTTGTCCTGATTGCAGCACGGTAT
TTGCAGTGAGCTCGCGCAGCTTCTAGACA
FMO14287.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtnl2-RC | 969 | CG1279-RC | 111..861 | 10..754 | 3605 | 99.2 | Plus |
| Rtnl2-RB | 948 | CG1279-RB | 90..840 | 10..754 | 3605 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7529319..7529794 | 485..10 | 2380 | 100 | Minus |
| 3R | 32079331 | 3R | 7528988..7529248 | 740..484 | 1105 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:32:03 has no hits.
FMO14287.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-25 10:12:38 Download gff for
FMO14287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl2-RB | 90..854 | 10..765 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:09:35 Download gff for
FMO14287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl2-RB | 90..854 | 10..765 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:09:35 Download gff for
FMO14287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7528958..7529247 | 485..765 | 96 | <- | Minus |
| 3R | 7529320..7529794 | 10..484 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-25 10:12:38 Download gff for
FMO14287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3354680..3354969 | 485..765 | 96 | <- | Minus |
| arm_3R | 3355042..3355516 | 10..484 | 100 | | Minus |
