FMO14311.5prime Sequence
1008 bp (923 high quality bases) assembled on 2015-04-08
> FMO14311.5prime
TCAGTCGACATGTCAGAGAACAAGGACGAGGCCTTGACCAGTTTTCAGAG
CATTACGGGCATCGACGATGTGGGCGAAGCCTTTTCCCACTTGGAGGCCG
CCGACTGGAATCTTGTGGAGGCTCTAAGTCGCGTGATCCCGCACGAGGAT
GCGCCGCTGACCAGTCCCCATCCTATCCTGGTGCCAGAGCCACCGGCCAG
GAATGCCGTGGAGAGCACGAATGGCTTCCGTCCGCCTGGCTTTGATGAAA
TGCCCGGGACTTCTAACGCGTCCGGTTTCTTTGCGGCCGCCCTTCAAAAC
CAGAACCAAAACCTAAACCTAAATCAGCCGCACATCCAGCAAAGATTTCC
AACCCAGCTGACGTCCAGTATCAACCTGGACCCCGCGTCCAGCCAAAACA
ACAACCAAAACGTGATCACCTTCAACATCCACTTTAACCAGCAGCTCTAC
CAGCTCCGTTTACCATCGGAGGCCACAGTTGAACAACTTAAACGCAAAAT
CTTTGCCGAGACAAGTGTGCCTGTGTGCAGGCAAGCCATTCGCGGCTGGC
CACCCTCCAAAGCCAGCGATGCACAGCAGCTGGGCACTCGTTTATGCAAC
CTAGATCTCTCCCCGGAGAATGAACTGATCCTGGTGGACCTCACCGAAGA
CGGTTTCATGGACACCGAACAGGATGAAGTGACGCAGCGCGTGGACAAGG
ACTTCACCATTTTCATACAGTTCGAATCGGACCCACCACTCACTCTTAGC
CTGCCAGGACGTATGACAGTGCAAGAGGTAAAGATGAACGTGTTCGACAT
CAGAGCATACCAGTGCGCCACCAGGAGTGGACCGGCTGGCCCACGGTTGT
GACATGACACCACTCTGGCGCATCTGGCATTGGGCTCCTCGCATAGATTC
GCCTGTTCGCAGCCACGGAACGATCAGCGCCCAACAAATTCCAATCCAGC
ACCAACGCCATTCTATTGTGGTGACCGTGTGACAAGTGGAGAAGCTCTCT
CCACGAAT
FMO14311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| casp-RC | 2542 | CG8400-RC | 122..1087 | 10..979 | 4555 | 98.7 | Plus |
| casp-RB | 2557 | CG8400-RB | 122..1102 | 10..979 | 4395 | 97.2 | Plus |
| casp-RA | 2557 | CG8400-RA | 122..1102 | 10..979 | 4395 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-04-08 10:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16027337..16027572 | 352..117 | 1180 | 100 | Minus |
| 2R | 25286936 | 2R | 16026866..16027057 | 672..481 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 16026611..16026812 | 870..672 | 860 | 98.5 | Minus |
| 2R | 25286936 | 2R | 16027135..16027263 | 481..353 | 645 | 100 | Minus |
| 2R | 25286936 | 2R | 16027664..16027736 | 118..46 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 16027884..16027922 | 48..10 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-04-08 10:05:08 has no hits.
FMO14311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:08:08 Download gff for
FMO14311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| casp-RC | 118..1101 | 5..997 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-04-08 10:08:08 Download gff for
FMO14311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16027337..16027571 | 118..352 | 100 | <- | Minus |
| 2R | 16027665..16027733 | 49..117 | 100 | <- | Minus |
| 2R | 16027884..16027926 | 5..48 | 95 | | Minus |
| 2R | 16027135..16027263 | 353..481 | 100 | <- | Minus |
| 2R | 16026611..16026812 | 672..870 | 98 | <- | Minus |
| 2R | 16026867..16027056 | 482..671 | 100 | <- | Minus |
