FMO14315.5prime Sequence
1038 bp (927 high quality bases) assembled on 2015-04-08
> FMO14315.5prime
TCAGTCGACATGATCAAGAGCTCCCTTAAACGCTTAAAAACGGCGCCGAC
CACAACAATGCCTTATCAGCCAGCCAACAGCGGCGGGACGTCTGGTGGCA
GCAAGGCGGCAGCCAAGATGGCCCAGCTAAAGTTCTGGAACAAGCAGAAC
AGCAGCAAGCAGCAGCAGCAGGACAAGGACAAGGACGCCGCCGACGGGGG
CAACAACACCAGTGGCGGCGGCACTGGCAGCAACAGCAACGGGGATGCCA
AAAGCGAGGCCAAGAACGGCAAGCGCAACTGGCTGCACACGCCGGAGCAG
CTCATCAGCGGACACGCGGTCTATCTAGTCAAGTTCTTTGGTAACCTGAG
CGTGGATCAGCCCAAAGGGATTGAGGTGGTCAAGGAGGCCATTCGGAAGC
TGCAGTTTGCCCAGCAGATGAAGAAGGCGGAAACGGGCACCCAGGAGAAG
TTCAAGAAGCTTGAGATCACCATTAGCATCAAGGGCGTGGCAATCCAGGA
GCCGCGCACCCACAAGATCCTCCACCAGTTTCCGCTGTACAACATTTCGT
ATTGTGCGGACGAGAAGGGTGTGAAGAAGTTCTTCAGCTTCATTGCCAAG
ACGGTGAAGACGCAGGACGGCAGCGATCCGACGTCAAATGGCCATGCAAA
CGGAAATGGCGATGGTAGTGCCAAAGTCGAGGAGAGCCACGAGTGCTTTG
TCTTCATTTCAAACAAATTGGCCTCGGATATCACGCTGACCATTGGCCAG
GCCTTCGATTTGGCCTACAGAAAGTACATGGATAGCACCGAAAAGACGAA
TCTGAGCAAGGCGCAGCAACAGATTAATCATCTGCAACAAACCGTAAACG
TTTACAAGGAGCGACTGCGAGAAGTTTCCGCCAAATTGCCAAAGCCGAGC
TAGATGCCCTGCTCTTCAATCTGGGAATCCAGGATATCCTGGAAGCCGCC
CCACCCACAGAACCCAGATGGAATCAGGGTCCAGCGAAGCCCTGATCACG
CAGCTGATGAATGATAAGCTGCTATCGAACCATTCACC
FMO14315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ced-6-RD | 2462 | CG11804-RD | 255..1274 | 10..1024 | 4750 | 98.4 | Plus |
| ced-6-RC | 2257 | CG11804-RC | 59..1069 | 19..1024 | 4705 | 98.4 | Plus |
| ced-6-RA | 2382 | CG11804-RA | 185..1194 | 20..1024 | 4700 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-04-08 10:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9436362..9436800 | 770..332 | 2195 | 100 | Minus |
| 2R | 25286936 | 2R | 9437420..9437734 | 333..19 | 1575 | 100 | Minus |
| 2R | 25286936 | 2R | 9436116..9436296 | 946..767 | 840 | 98.9 | Minus |
Blast to na_te.dros performed 2015-04-08 10:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6893 | 139..240 | 184 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6905 | 135..315 | 174 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2427 | 157..279 | 158 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1598 | 131..255 | 145 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1024..1148 | 157..279 | 116 | 57.1 | Plus |
FMO14315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:08:37 Download gff for
FMO14315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ced-6-RD | 249..1292 | 1..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-04-08 10:08:37 Download gff for
FMO14315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9436051..9436292 | 771..1006 | 93 | <- | Minus |
| 2R | 9436362..9436798 | 334..770 | 100 | <- | Minus |
| 2R | 9437420..9437736 | 14..333 | 99 | | Minus |
