FMO14327.5prime Sequence
999 bp (891 high quality bases) assembled on 2015-04-08
> FMO14327.5prime
TCAGTCGACATGCGCTCTTCGAAGTGGCTGCTTCCGGTGAGGGTGCTGCT
CACCTACCAGGTGCTGCTTCTACTCCTCCGCCAGGCGAAAGGCGAGGAGA
GCCACTGCACCTCGGTGGCAGGAATGGTCAAGCTGCTCGATTTGGAGGCG
CAGCTGATCGACAACCTAGAGGATTACGCTGTCGAGCTGGAGAAGAAACT
GCAGACCGTAAGAAGGAGCATAACAAGTCTGCGTTTGGAAAATGACAAAG
CCCGCAGTTCCACGGAGGAGTACTTATCCAATCCCCTGAACTCCTTTTCC
CTCATTCGTCGCATGAATCGCGACTGGATTATTTGGCAACTCTACATGGA
CGATCCGGTGGGTATTTCTCAGGTGGAGCGAATCCAGGAGTTGAGGGAAC
ACATGCCCACCCACACGGATGTGGAGGAGGCTGTCACTGCCTTGGATCGC
ATTCAAAGCACCTATGGCCTTAAAGTGCCGGAAATCTCCCATGGATTCCT
CAATGGCAAACAGTACAATGTGAGTCTCACTGTATTGGATACCTATGCCA
TGGGACAAATCTTATTTGACCAGAAAAACTATTTGGCAGCTGCTAGCTGG
ATCTATCAGTCCGTTGTATTGATGGAGGCCTTTTCGATGGCTGCTCCGCT
TGAGATTTCCAAAAATGAAGTGCGGATGGTATATGCTGAAACCCTGTTAA
AGCTTAACCAGCACGCCGATGCCCTGAAAGTTGTCAACATTGCTCTGACT
GATAACCCGCACGATATTAAACTGTTGCTGAAGAAGTCGGAAATCGAAAC
GATGATAAGACGAGCACCAATAATGCGCTGCGGTAAGTTCAGCAACAGCG
TGCACTGCCTACAGATCGGCTGTCGAGGTCAGTTCCGCCGTCCGCGATAG
CAAGCTTTACTGTCTGACTACAGAAACACCTCGCCTTTTCTGATACTGCT
CCGCTCAGATGGAACTGGTGGCCTGATCTACATGGTGCCTACCGAATGT
FMO14327.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaPV-RA | 1949 | CG31015-RA | 56..1058 | 10..993 | 4480 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-04-08 10:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30647897..30648201 | 518..214 | 1525 | 100 | Minus |
| 3R | 32079331 | 3R | 30648290..30648496 | 216..10 | 1035 | 100 | Minus |
| 3R | 32079331 | 3R | 30647648..30647835 | 706..519 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 30647452..30647574 | 828..707 | 550 | 98.4 | Minus |
| 3R | 32079331 | 3R | 30647213..30647327 | 971..862 | 265 | 92.2 | Minus |
Blast to na_te.dros performed on 2015-04-08 10:06:07 has no hits.
FMO14327.5prime Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:08:59 Download gff for
FMO14327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaPV-RA | 52..1058 | 2..993 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-04-08 10:08:59 Download gff for
FMO14327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30647441..30647574 | 707..836 | 95 | <- | Minus |
| 3R | 30647648..30647835 | 519..706 | 100 | <- | Minus |
| 3R | 30647897..30648199 | 216..518 | 100 | <- | Minus |
| 3R | 30648291..30648500 | 2..215 | 98 | | Minus |
