FMO14334.5prime Sequence
952 bp (872 high quality bases) assembled on 2015-04-08
> FMO14334.5prime
TCAGTCGACATGACGAAAACGACAAAGCCCAAGGAGAAGGCAGCGGCGGG
AGGGGCGGTTATAGGGTCGGGATCGGGATTGGGTTCGGTGACCAAGGCGG
GCGGCGGTAGTCTGCTTTCGAATGCGGCGGACAGTAAGATCCGCACGGCC
AAGTCCAACAACAACAAGCGGCAGGCAGGACGAGCGGCGACAGCATTAGC
AGCTACAACAACAGCATCAGCCTTAGCGGCAACAACAACAGCGGGAGCAA
CAGGATCAAATGCAGCAGCGAATGAGACGGAAATAGCGATCGAAACGGAG
AACGGAGAAGCAGCGACGCCGACTGCGGCAGCAACGGCCGCCGCAGCGAA
TTTATCGTCACTTGAGTCCGCTCGCTCGCAGGCTCTCACTTCAGTTGTCA
GCGAAACAGCAAGGCAAGCGGTTACCACAGCAAACGCGTCGGCAACATCA
ACATCAACAGTTACAGCAGCAACAGAAATAGCAACCGCAACAGCAAGCGA
CACAGCAGCAACATCTGAAGCAGCGATCGATGACGATCCAAGTGCGATAA
ATACTAACAATAATAATAATAATAGTAAAGCGCAGAACGACGCGAGTGAA
AGTGTTAAAACAAAAGTGATAAGCTACCATCAGTCTGAGGATCAACAGCA
ACAGCAGCAGCAACAAGCCCATATCTACGAGCAACAGCAACAGTTTCTCA
GCCAGCAATTAATAAGCCACCATCAGCAGGAACAGCATCAGCAGGCGCAG
CAGCAACAGCATCAGCAGGTGGTGCAGGAGCAACACCAGGCCAGTTGGCT
GGCCTATGACCTGACCAGCGGATCAGCGGCAGCAGCAGCGGGCGGCAGCG
GCAGCAGCATCGCATCCCACCTCTTCAGGAAATTTCTCTATCCGCCAGCC
ATCAACGCCTACCAGCTCTCTACGAGACATAACTCAGCACGGATTCCTAA
TG
FMO14334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RA | 4459 | CG3992-RA | 86..1031 | 9..952 | 4360 | 98 | Plus |
| srp-RB | 4414 | CG3992-RB | 86..1031 | 9..952 | 4360 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-04-08 10:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15994225..15995112 | 9..896 | 4240 | 99 | Plus |
Blast to na_te.dros performed 2015-04-08 10:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2283..2956 | 119..788 | 453 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2992 | 156..862 | 438 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2266..2945 | 160..865 | 414 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2268..2656 | 404..788 | 350 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2989 | 131..788 | 337 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..7111 | 156..526 | 336 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2999 | 156..693 | 323 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..7090 | 155..526 | 318 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..7217 | 204..894 | 310 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6941 | 641..861 | 298 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2384..2856 | 403..861 | 273 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6885 | 430..788 | 268 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2362..2524 | 626..788 | 266 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..7036 | 626..881 | 266 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2659 | 403..743 | 263 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2501 | 626..789 | 263 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..3034 | 124..692 | 257 | 54.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6918 | 626..788 | 255 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2535 | 626..861 | 253 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2496 | 648..861 | 250 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..7446 | 131..789 | 241 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2365..2552 | 609..795 | 235 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2814 | 399..861 | 234 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6860 | 197..335 | 234 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2769..2963 | 156..361 | 221 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7079 | 423..787 | 220 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2718..2934 | 133..347 | 216 | 58.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1227 | 405..574 | 216 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2903 | 177..526 | 215 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6824 | 415..515 | 215 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6943 | 464..693 | 214 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6900 | 399..519 | 210 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1603 | 200..285 | 205 | 70.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1157 | 440..534 | 201 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6949 | 306..543 | 200 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2979 | 132..335 | 198 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6924 | 473..695 | 195 | 58.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1174 | 180..296 | 195 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1165 | 157..250 | 193 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2446..2549 | 641..743 | 183 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6819..6952 | 626..765 | 182 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6437..7002 | 203..767 | 178 | 52.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1463..1595 | 392..519 | 176 | 63.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1136 | 431..524 | 175 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1673 | 425..582 | 173 | 61.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 904..1163 | 470..742 | 160 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1482..1588 | 121..222 | 153 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2923..3000 | 174..254 | 146 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1050..1171 | 378..496 | 143 | 59.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2016..2105 | 680..769 | 135 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1525..1598 | 641..717 | 134 | 69.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1077..1144 | 626..693 | 133 | 66.2 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7391..7450 | 189..249 | 131 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1358..1629 | 423..707 | 130 | 57 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 670..728 | 270..212 | 124 | 67.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1109..1182 | 625..696 | 121 | 66.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1078 | 180..284 | 113 | 62.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 93..162 | 190..261 | 112 | 65.8 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11271..11340 | 190..261 | 112 | 65.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1154 | 641..691 | 111 | 68.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3285..3378 | 643..737 | 111 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1543..1571 | 638..666 | 109 | 86.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 128..194 | 159..221 | 109 | 67.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9158..9224 | 159..221 | 109 | 67.2 | Plus |
FMO14334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:08:50 Download gff for
FMO14334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 86..964 | 9..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-04-08 10:08:50 Download gff for
FMO14334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15994225..15995123 | 9..906 | 98 | <- | Plus |
