FMO14341.5prime Sequence
928 bp (804 high quality bases) assembled on 2015-04-08
> FMO14341.5prime
TCAGTCGACATGTCATTCGATATAGCCGTGGCCGATCAGATGCGCATTGC
ACTGAACTACGTCAAGTTCAAGACGAACCAGCAACGCCTGCGCAGCAATG
ACAAGGTCATCGCCGACACGGTCTACGGAAAGGTGAAGGGGGTGAAGTGG
CAGTCCATCTACGGCAACAACTACTACAGCTTCGAGGGCATCCCGTTCGC
CAAGCCGCCGGTGGGCGAGCTCCGCTTCAAGGCGCCCGTGGAGCCAGAGC
ACTGGTCAGATGTCAAGCGGTGCACACATGTTCGCGCCAAGCCCTGCCAG
GTCAACATCGTTCTGAAGCAGGTGCAAGGCAGCGAGGACTGTCTGTACCT
CAATGTCTACACCAGGGAGTTACATCCACACAGACCTTTGCCGGTTCTGG
TTTGGATCTATGGCGGTGGATTCCAAATGGGAGAAGCATCGCGGGATCTG
TACAGCCCGGACTACATTATGATGGAACATGTCGTACTGGTCGTAATATC
CTATCGGTTAGGAGCCCTGGGATTCCTTAGTCTTGCAGACGAAGAACTGG
ATGTTCCTGGAAACGCCGGACTAAAGGATCAAGTTATGGCCTTGCGGTGG
GTCAAACGGAATTGCCAGTTCTTTGGTGGCGATCCCGATAATATAACCGT
TTTTGGTGAGAGTGCTGGAGGTGCATCCACACATTATATGATGCTGACGG
ATCAGGCCAAGGGCCTATTTCACAGACTATTATTATGTCGGGATCCGCAC
TGCACCCTGGCGCAGACCCAACCCACATAATTACCTATCGCTGCACAGCA
CTGCTACACAGAGATGCTACGATCGGACATTTTGCCATCTCAGAAATGTA
AGCAGTAGCATGCTGAAGGTGGCGAGGATATCATCACCATGGAGGACACA
CCACGTTGAACATGTCAGCTTTGGACCA
FMO14341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est8-RA | 2646 | CG1121-RA | 463..1406 | 10..927 | 4070 | 97 | Plus |
| alpha-Est9-RC | 3225 | CG1128-RC | 665..1203 | 136..674 | 260 | 71.4 | Plus |
| alpha-Est9-RD | 3455 | CG1128-RD | 665..766 | 136..237 | 255 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-04-08 10:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7510998..7511414 | 780..368 | 1885 | 99 | Minus |
| 3R | 32079331 | 3R | 7511911..7512223 | 369..57 | 1565 | 100 | Minus |
| 3R | 32079331 | 3R | 7497185..7497286 | 237..136 | 255 | 83.3 | Minus |
| 3R | 32079331 | 3R | 7515155..7515208 | 63..10 | 240 | 96.3 | Minus |
Blast to na_te.dros performed on 2015-04-08 10:06:37 has no hits.
FMO14341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:09:23 Download gff for
FMO14341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est8-RA | 455..1406 | 1..927 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-04-08 10:09:23 Download gff for
FMO14341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7510829..7511412 | 370..927 | 95 | <- | Minus |
| 3R | 7511911..7512223 | 57..369 | 100 | <- | Minus |
| 3R | 7515162..7515215 | 1..56 | 92 | | Minus |
