FMO14342.5prime Sequence
1039 bp (917 high quality bases) assembled on 2015-04-08
> FMO14342.5prime
TCAGTCGACATGGCCGAATTTCTGGACTCCGAGGCCGAGGAATCGGAGGA
GGAGGAAGAATTGGACGTCAACGAGCGCAAGAGACTCAAGAAACTGAAGG
CGGCCGTCTCCGATAGTAGCGAAGAAGAAGAAGACGACGAGGAACGGCTG
CGCGAAGAGCTCAAAGATCTGATCGACGACAATCCCATCGAGGAGGACGA
TGGCAGTGGTTACGATTCCGATGGCGTCGGCAGCGGCAAGAAGCGCAAAA
AGCACGAGGACGACGATCTGGACGATCGACTGGAGGACGACGACTACGAT
CTTATCGAGGAGAATCTGGGCGTCAAAGTCGAGAGACGGAAGCGGTTCAA
GCGTCTGCGTCGCATCCACGACAACGAAAGCGATGGCGAGGAGCAGCACG
TGGACGAGGGTCTGGTGCGTGAGCAGATTGCCGAGCAGTTGTTCGACGAG
AACGATGAGAGCATTGGTCATCGCAGCGAGCGCAGTCACAGGGAGGCGGA
CGACTACGACGACGTGGATACGGAGTCGGACGCAGATGACTTCATTGTGG
ACGATAATGGGCGTCCCATAGCCGAGAAGAAGAAGAAACGGCGCCCCATC
TTTACAGACGCATCACTTCAAGAGGGTCAGGACATCTTTGGCGTAGACTT
CGACTATGACGACTTCTCAAAGTACGAGGAAGACGACTACGAAGATGACT
CGGAAGGAGATGAGTACGATGAGGATCTGGGCGTCGGCGATGATACGCGC
GTCAAGAAGAGAAAGCGCTCAAAAAGAACGTGGTCAAGAAGACAATCTTC
GACATATACGAGCCCAGCGAGCTCAAGCGTGGTCATTTCACGATATGGAC
ACGAGATTCGCAGACGACATCCCAGAAAGATGCAGCTGCGAGAGTGCCCG
TAACCCCGGTGCCCGAGGATCGACGAGCTGGACCTCGAAGGCTGAATGAT
CTACAAATATGCTTCTGCAGCACACTGTTTCGACCGAAGCGGGAAGCCCG
GAAATGCCAACACCGACAAACCGTTAACAGAATAGCGAA
FMO14342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt6-RB | 6070 | CG12225-RB | 111..1094 | 10..982 | 4585 | 98.6 | Plus |
| Spt6-RA | 6166 | CG12225-RA | 111..1094 | 10..982 | 4585 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-04-08 10:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6269531..6269912 | 612..982 | 1250 | 96.3 | Plus |
| X | 23542271 | X | 6268765..6268972 | 132..339 | 1040 | 100 | Plus |
| X | 23542271 | X | 6269312..6269465 | 458..611 | 770 | 100 | Plus |
| X | 23542271 | X | 6269124..6269244 | 339..459 | 605 | 100 | Plus |
| X | 23542271 | X | 6268105..6268191 | 47..133 | 435 | 100 | Plus |
| X | 23542271 | X | 6267907..6267946 | 10..49 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-04-08 10:06:39 has no hits.
FMO14342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:09:26 Download gff for
FMO14342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt6-RB | 111..1097 | 10..988 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-04-08 10:09:26 Download gff for
FMO14342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6267907..6267945 | 10..48 | 100 | -> | Plus |
| X | 6268107..6268191 | 49..133 | 100 | -> | Plus |
| X | 6268767..6268972 | 134..339 | 100 | -> | Plus |
| X | 6269125..6269244 | 340..459 | 100 | -> | Plus |
| X | 6269314..6269465 | 460..611 | 100 | -> | Plus |
| X | 6269531..6269915 | 612..988 | 95 | | Plus |
