FMO14357.5prime Sequence
1056 bp (946 high quality bases) assembled on 2015-04-08
> FMO14357.5prime
TCAGTCGACATGACCAATGAGTGGATCGATTGGAATGACAGTCGGATGCT
ACCGCCGCTGCGGTCGGCAAACTATAACTACCATCCTCAGACCTTCTTGC
CAAATAATTATCAGTGCTTTACTGGAAAATTCCACCTGAAGGGACAAAAG
TTGCAGCAGCTAACCACCAATCATAGCAAGCTCAAAGAAGTTCCCACCGC
CTTGCCACCCCTCACGCCGGGCACCAATCGCAAGGTCAACGAGGTACTGA
AGGCATCCTTTGCCTCCTGGGAAAAGGAGGTCCAAAAATGCAACATAACC
AAAGATCCGCGTGAATGGACGGAGGAGCATGTCATCTACTGGCTCAATTG
GGCCAAAAATGAGTTCTCATTGGTCTCCATGAACCTGGACCCCTTCTACA
AGATGAAGGGACGCGCCATGGTGGATCTGGGCAAGGAGAAGTTCCTGGCC
ATCACGCCGCCCTTCACCGGCGACATACTGTGGGAGCACTTGGACATCCT
GCAAAAAGATTGCGAGAAACCAAATGAGGATATTGTGCACGGCAATTCCT
TTGAGTCGGCCACCACGGCCTCGGTCTGTGGATCGGACCACCAGGTGGCC
AATTACCCCAACGAGACGCACGCCAACAGCAACAACAGCAGCATAAACAG
CCGCCTGTCCATGGATTATGTGACGTCGGCGGGGAATAGTGATAATAAAA
ACTTCCACCGCGCCACGCCTCACTCCCACAATGGCTACAACACCAGCAAC
ACACACGACCGCATCAACAACAGCACGCCCCCGCAGCAGCAGCAATCGCA
GCAGCCGACTGTCAATGGCAGCGGTAGCGCCAGCAGCAACAACAATAACT
CCATGCTACCGCCCCGCTGTACAGCAAAGCACAACGAAAATATCAACACC
CAGCAGCAGCAACACAAACAACAGCAGCACAACAACAACAACAGCGGGTG
GCAGCCACAATTCGTAATGGCGGGCAGCATAACACCATATTATACCATAT
ATTTACCTTATGGGAGGCGGCGGGCGAATCTCCCACATCACCCCCAGAAG
GAGCGG
FMO14357.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnt-RD | 2805 | CG17077-RD | 474..1506 | 10..1042 | 4620 | 97.2 | Plus |
| pnt-RB | 4074 | CG17077-RB | 1206..2062 | 186..1042 | 3755 | 96.8 | Plus |
| pnt-RE | 3715 | CG17077-RE | 1394..1703 | 733..1042 | 1050 | 91.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-04-08 10:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23311981..23312208 | 734..507 | 1125 | 99.6 | Minus |
| 3R | 32079331 | 3R | 23312887..23313092 | 508..303 | 1015 | 99.5 | Minus |
| 3R | 32079331 | 3R | 23292452..23292682 | 964..733 | 890 | 97 | Minus |
| 3R | 32079331 | 3R | 23313665..23313842 | 187..10 | 875 | 99.4 | Minus |
| 3R | 32079331 | 3R | 23313442..23313560 | 304..186 | 595 | 100 | Minus |
Blast to na_te.dros performed 2015-04-08 10:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2546 | 735..966 | 322 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2543 | 734..915 | 256 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2771..2989 | 722..943 | 254 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2534 | 798..1050 | 248 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2668 | 606..962 | 244 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2666 | 609..935 | 227 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..7040 | 729..957 | 195 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..7087 | 605..930 | 183 | 55.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3252..3393 | 775..918 | 164 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2685 | 620..939 | 161 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2982 | 620..805 | 156 | 59.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1128 | 777..844 | 155 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2687 | 609..924 | 123 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..6848 | 624..654 | 110 | 83.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1145 | 624..654 | 110 | 83.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 1737..1786 | 829..880 | 110 | 73.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12915..12964 | 829..880 | 110 | 73.1 | Plus |
FMO14357.5prime Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-04-08 10:09:50 Download gff for
FMO14357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnt-RD | 470..1458 | 7..997 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-04-08 10:09:50 Download gff for
FMO14357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23292468..23292681 | 734..947 | 97 | <- | Minus |
| 3R | 23311982..23312206 | 509..733 | 99 | <- | Minus |
| 3R | 23312887..23313090 | 305..508 | 99 | <- | Minus |
| 3R | 23313442..23313558 | 188..304 | 100 | <- | Minus |
| 3R | 23313665..23313846 | 7..187 | 98 | | Minus |
