FMS01004.5prime Sequence
1188 bp (-60 high quality bases) assembled on 2011-07-08
> FMS01004.5prime
CAAAGACGATGACGAAAAAACAAATTTACCCATACGATGTTCCAGATTAC
GCTGCTGCTGGATCCATAACTTCGTATAGCATACATTATACGAAGTTATC
AGTCGACATGTCGCAGTTCAATTTTGTGAGCGATTTGCAGAATGCTCTCA
TCATGGACGGCGAGACGCGCGGACCTGCGCCCAGGTGGAAGAAGAAGCTG
GAGGCGTCTCTAAATGGAAGTGTGAATACCACTCGGTCGGTGCTATCCGT
CTCGTACAACACCAGTTTCTCGGGTGTCCAGGCGCCCACGAAAACTCCGG
GCAAGAGCAGCGAGGGCAAGACCAAGAAGTCCAACACCACGCCCTCTAAG
ACGCCAGGAGGCGGAGATCGCTTTATTCCGAATCGGGCGGCTACCAACTT
TGAGTTAGCACACTTTCTGGTGAACAAAGACTCCGGCGATAAGTCCGATG
AGGAGAACGACAAGGCCACCTCGAGCAACAGCAACGAGAGCAATGTCCAG
GCTTCGGCTCACAAGGGCGACCGGCAGAAACTCATCTCTGAAGTGGCCCA
GGTCGGTGACTCCAAGGGCGGGCGCATTTTGTGCTACCAAAACAAGGCTC
CCGCTGCTCCAGAAACACACAACAATCCCCTGAAGGTCGTGTACTCCATT
AAGACACCCATATCCACAAAGAGTGGCTCACGCTATATACCCACCACATC
CGAGAGGATTCTGGATGCACCTGATTTTATTAACGATTACTATTTAAATC
TTATGGATTGGAGTGCCGACAATATAGTGGCTGTGGCCTTGGGCAGTTGC
GTCTATTTGTGGAACGCACAGACCGGAAATATCGAGCAGCTTACGGAGTT
TGAGGAGGGCGACTACGCAGGCTCGCTATCGTGGATCCAGGAGGGGCAGA
TACTTGCCATCGGCAACAGCAACCGGTGCCGTGGAGCTGTGGGACTGCTC
CAAGTGAAGCGTCTGCTAGTTGATGGATGGACACCAGTGCCCGAGTGGGA
TCCTTGCCTGGAACTTATTCCCTGGTTTCCTCTGGCAGCCGGGATGCACC
ATTGTCAACACGATGTGCGGTGACGTGAGCACAAAGCTTTCCACATTGTC
CGGAACCACGCAGAAGTTTTGCCGGCCTAAAAGGGTCCCACGAGATTTTC
AGTAATTTGGTCTAACGGAAGGCAAACACAACATCTCT
FMS01004.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzy-RA | 1996 | CG4274-RA | 146..1206 | 108..1175 | 4760 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16311505..16311827 | 419..741 | 1615 | 100 | Plus |
| 2L | 23513712 | 2L | 16311101..16311414 | 108..421 | 1570 | 100 | Plus |
| 2L | 23513712 | 2L | 16311881..16312260 | 742..1122 | 1325 | 95.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:06:51 has no hits.
FMS01004.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:09 Download gff for
FMS01004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzy-RA | 169..1201 | 100..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:54 Download gff for
FMS01004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzy-RA | 142..1174 | 100..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:46 Download gff for
FMS01004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzy-RA | 142..1174 | 100..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:46 Download gff for
FMS01004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16311881..16312275 | 742..1138 | 94 | | Plus |
| 2L | 16311097..16311412 | 100..419 | 98 | -> | Plus |
| 2L | 16311506..16311827 | 420..741 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:54 Download gff for
FMS01004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16311097..16311412 | 100..419 | 98 | -> | Plus |
| arm_2L | 16311506..16311827 | 420..741 | 100 | -> | Plus |
| arm_2L | 16311881..16312275 | 742..1138 | 94 | | Plus |
