Clone GH01066 Report

Search the DGRC for GH01066

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:10
Well:66
Vector:pOT2
Associated Gene/TranscriptNmdmc-RB
Protein status:GH01066.pep: gold
Preliminary Size:1158
Sequenced Size:1249

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11992 2001-01-01 Release 2 assignment
CG18466 2001-01-01 Release 2 assignment
CG18466 2001-07-04 Blastp of sequenced clone
CG18466 2003-01-01 Sim4 clustering to Release 3
Nmdmc 2008-04-29 Release 5.5 accounting
Nmdmc 2008-08-15 Release 5.9 accounting
Nmdmc 2008-12-18 5.12 accounting

Clone Sequence Records

GH01066.complete Sequence

1249 bp (1249 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047498

> GH01066.complete
TGAAACCAAGTTCTTTTATAGAATACTTTAAACAAAAAGTGTTGCAATAT
TTAACGAGCTTAAAAGTATATTAGTGCAATAAACTCTAATAGGACATCAG
ATATTATTCAACAGATCAAACGTTTTCAGTTATTAAAAGAACTCGATTCA
AAATGCGATTCACAAGCAACATGGCTCAAATTATCGATGGCAAGGCCATA
GCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTCAAGGGAATGGAGGC
TGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCATTGTGGGCGAGGATC
CGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCGCCTGCCGGGAGGTG
GGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCTACCACGCAGGAGGA
GCTGCTGCAACTGATTGCCGATCTGAACAAGGATCCCCAGGTCACGGGGA
TACTGGTGCAGCTGCCGGTACCCGAGCACATCAATGAGCGCACCATCTGC
AATGCCGTCGATGTGGACAAGGATGTGGATGGCTTCAATGAGGTCAACAT
CGGACGCACGGCTCTGGACATGGAGGCCAATATTCCGGCCACGCCGCTGG
GAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAACTCTCGGTCGTAAC
GCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTACCGATGGCAATCTT
GCTGCACGCGGATGGCAAGTATGCCACCAAGGCAATGGATGCCACGGTGA
CCATCTGCCACAGGTATACACCGCCCAAGGAACTGGCTCGCCATTGCCGC
CAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCGGGTTTGATCACCAA
GGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGTGGGCATCAACCGCA
TCAAGGATGAGAGCACTGGCCAGTTTAAGCTGGTCGGAGACGTGGACTTT
GAAGAAGTTCGCCAGGTCGCCGGCCACATCACTCCTGTGCCCGGCGGAGT
TGGTCCCATGACGGTGGCCATGCTGATGCACAACACGCTGAAGGCAGCCA
GGAAGCAGTTCGATGATCGCAAGTCCTCCTGAAGATTCACCAGTAACTAT
CGTGCTTCGCTGGCCGAGAAATAGTATTTTTATTTAATCCCCTAAACCTA
TATTAGATAGTAAAGTTACTGACCACAAGCTAACATGACATAAACCCACA
TATTTTGCTATATAAACAGAAATAATGAAATAAAAAAAAAAAAAAAAAA

GH01066.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-RB 1283 Nmdmc-RB 21..1252 1..1232 6160 100 Plus
Nmdmc-RA 1310 Nmdmc-RA 211..1279 164..1232 5345 100 Plus
pug-RC 3030 pug-RC 820..929 927..1036 220 80 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4868745..4869534 954..165 3920 99.7 Minus
chr3R 27901430 chr3R 4868389..4868684 1231..948 1220 94.9 Minus
chr3R 27901430 chr3R 4876257..4876423 166..1 785 99.4 Minus
chr3R 27901430 chr3R 6526569..6526678 927..1036 190 78.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:24:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9042852..9043641 954..165 3950 100 Minus
3R 32079331 3R 9042507..9042793 1232..946 1420 99.7 Minus
3R 32079331 3R 9050364..9050529 166..1 830 100 Minus
3R 32079331 3R 10701025..10701134 927..1036 220 80 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8783683..8784472 954..165 3950 100 Minus
3R 31820162 3R 8783338..8783624 1232..946 1420 99.6 Minus
3R 31820162 3R 8791195..8791360 166..1 830 100 Minus
3R 31820162 3R 10441856..10441965 927..1036 220 80 Plus
Blast to na_te.dros performed on 2019-03-15 15:43:38 has no hits.

GH01066.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:44:50 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4868389..4868677 955..1231 95 <- Minus
chr3R 4868745..4869532 167..954 99 <- Minus
chr3R 4876257..4876423 1..166 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:01:44 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 1..930 153..1082 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:38 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 1..930 153..1082 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:37:28 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 1..930 153..1082 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:04:11 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 1..930 153..1082 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:13:33 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 1..930 153..1082 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:31:32 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 21..1251 1..1231 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:38 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 21..1251 1..1231 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:37:28 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 27..1257 1..1231 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:04:11 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 21..1251 1..1231 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:13:33 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 27..1257 1..1231 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:50 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9042508..9042784 955..1231 100 <- Minus
3R 9042852..9043639 167..954 100 <- Minus
3R 9050364..9050529 1..166 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:50 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9042508..9042784 955..1231 100 <- Minus
3R 9042852..9043639 167..954 100 <- Minus
3R 9050364..9050529 1..166 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:50 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9042508..9042784 955..1231 100 <- Minus
3R 9042852..9043639 167..954 100 <- Minus
3R 9050364..9050529 1..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:37:28 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4868230..4868506 955..1231 100 <- Minus
arm_3R 4868574..4869361 167..954 100 <- Minus
arm_3R 4876086..4876251 1..166 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:42:17 Download gff for GH01066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8783339..8783615 955..1231 100 <- Minus
3R 8783683..8784470 167..954 100 <- Minus
3R 8791195..8791360 1..166 100   Minus

GH01066.pep Sequence

Translation from 152 to 1081

> GH01066.pep
MRFTSNMAQIIDGKAIAQEVRTQLAHELKGMEAAGYPKPHLTAVIVGEDP
ASEKYVANKMVACREVGISSETKRLPASTTQEELLQLIADLNKDPQVTGI
LVQLPVPEHINERTICNAVDVDKDVDGFNEVNIGRTALDMEANIPATPLG
VKRLLEHMKIETLGRNAVVVGRSKNVSLPMAILLHADGKYATKAMDATVT
ICHRYTPPKELARHCRQADIIVVAVGKPGLITKDMVKPGACVIDVGINRI
KDESTGQFKLVGDVDFEEVRQVAGHITPVPGGVGPMTVAMLMHNTLKAAR
KQFDDRKSS*

GH01066.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18431-PA 306 GF18431-PA 1..296 7..302 1369 87.5 Plus
Dana\GF17545-PA 931 GF17545-PA 4..292 8..304 564 46 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17397-PA 303 GG17397-PA 1..303 7..309 1535 95.7 Plus
Dere\GG17628-PA 968 GG17628-PA 38..337 8..304 555 44.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18238-PA 303 GH18238-PA 1..295 7..302 1165 73.6 Plus
Dgri\GH14901-PA 934 GH14901-PA 3..292 8..301 521 43.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-PB 309 CG18466-PB 1..309 1..309 1576 100 Plus
Nmdmc-PC 303 CG18466-PC 1..303 7..309 1545 100 Plus
Nmdmc-PA 303 CG18466-PA 1..303 7..309 1545 100 Plus
pug-PC 934 CG4067-PC 4..292 8..301 551 45.3 Plus
pug-PA 934 CG4067-PA 4..292 8..301 551 45.3 Plus
pug-PE 965 CG4067-PE 35..323 8..301 551 45.3 Plus
pug-PD 968 CG4067-PD 38..326 8..301 551 45.3 Plus
pug-PB 968 CG4067-PB 38..326 8..301 551 45.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10194-PA 301 GI10194-PA 1..299 7..306 1133 71.7 Plus
Dmoj\GI23694-PA 935 GI23694-PA 5..288 8..296 545 44.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12491-PA 307 GL12491-PA 1..305 7..309 1247 78.4 Plus
Dper\GL11980-PA 970 GL11980-PA 34..331 2..304 559 45 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14943-PA 307 GA14943-PA 1..305 7..309 1247 78.4 Plus
Dpse\GA13173-PA 970 GA13173-PA 34..331 2..304 559 45 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26287-PA 303 GM26287-PA 1..303 7..309 1580 99 Plus
Dsec\GM23891-PA 968 GM23891-PA 38..329 8..304 552 44.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20823-PA 303 GD20823-PA 1..303 7..309 1584 99.3 Plus
Dsim\GD18702-PA 968 GD18702-PA 38..329 8..304 553 44.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23482-PA 301 GJ23482-PA 1..299 7..306 1168 73.3 Plus
Dvir\GJ23253-PA 935 GJ23253-PA 5..293 8..301 543 43.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14062-PA 304 GK14062-PA 1..300 7..306 1255 78.3 Plus
Dwil\GK11804-PA 934 GK11804-PA 4..295 8..304 551 43.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24801-PA 303 GE24801-PA 1..303 7..309 1528 95.7 Plus
Dyak\GE26043-PA 968 GE26043-PA 38..329 8..304 548 44.6 Plus

GH01066.hyp Sequence

Translation from 152 to 1081

> GH01066.hyp
MRFTSNMAQIIDGKAIAQEVRTQLAHELKGMEAAGYPKPHLTAVIVGEDP
ASEKYVANKMVACREVGISSETKRLPASTTQEELLQLIADLNKDPQVTGI
LVQLPVPEHINERTICNAVDVDKDVDGFNEVNIGRTALDMEANIPATPLG
VKRLLEHMKIETLGRNAVVVGRSKNVSLPMAILLHADGKYATKAMDATVT
ICHRYTPPKELARHCRQADIIVVAVGKPGLITKDMVKPGACVIDVGINRI
KDESTGQFKLVGDVDFEEVRQVAGHITPVPGGVGPMTVAMLMHNTLKAAR
KQFDDRKSS*

GH01066.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-PB 309 CG18466-PB 1..309 1..309 1576 100 Plus
Nmdmc-PC 303 CG18466-PC 1..303 7..309 1545 100 Plus
Nmdmc-PA 303 CG18466-PA 1..303 7..309 1545 100 Plus
pug-PC 934 CG4067-PC 4..292 8..301 551 45.3 Plus
pug-PA 934 CG4067-PA 4..292 8..301 551 45.3 Plus