BDGP Sequence Production Resources |
Search the DGRC for GH01066
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 10 |
Well: | 66 |
Vector: | pOT2 |
Associated Gene/Transcript | Nmdmc-RB |
Protein status: | GH01066.pep: gold |
Preliminary Size: | 1158 |
Sequenced Size: | 1249 |
Gene | Date | Evidence |
---|---|---|
CG11992 | 2001-01-01 | Release 2 assignment |
CG18466 | 2001-01-01 | Release 2 assignment |
CG18466 | 2001-07-04 | Blastp of sequenced clone |
CG18466 | 2003-01-01 | Sim4 clustering to Release 3 |
Nmdmc | 2008-04-29 | Release 5.5 accounting |
Nmdmc | 2008-08-15 | Release 5.9 accounting |
Nmdmc | 2008-12-18 | 5.12 accounting |
1249 bp (1249 high quality bases) assembled on 2001-07-04
GenBank Submission: AY047498
> GH01066.complete TGAAACCAAGTTCTTTTATAGAATACTTTAAACAAAAAGTGTTGCAATAT TTAACGAGCTTAAAAGTATATTAGTGCAATAAACTCTAATAGGACATCAG ATATTATTCAACAGATCAAACGTTTTCAGTTATTAAAAGAACTCGATTCA AAATGCGATTCACAAGCAACATGGCTCAAATTATCGATGGCAAGGCCATA GCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTCAAGGGAATGGAGGC TGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCATTGTGGGCGAGGATC CGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCGCCTGCCGGGAGGTG GGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCTACCACGCAGGAGGA GCTGCTGCAACTGATTGCCGATCTGAACAAGGATCCCCAGGTCACGGGGA TACTGGTGCAGCTGCCGGTACCCGAGCACATCAATGAGCGCACCATCTGC AATGCCGTCGATGTGGACAAGGATGTGGATGGCTTCAATGAGGTCAACAT CGGACGCACGGCTCTGGACATGGAGGCCAATATTCCGGCCACGCCGCTGG GAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAACTCTCGGTCGTAAC GCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTACCGATGGCAATCTT GCTGCACGCGGATGGCAAGTATGCCACCAAGGCAATGGATGCCACGGTGA CCATCTGCCACAGGTATACACCGCCCAAGGAACTGGCTCGCCATTGCCGC CAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCGGGTTTGATCACCAA GGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGTGGGCATCAACCGCA TCAAGGATGAGAGCACTGGCCAGTTTAAGCTGGTCGGAGACGTGGACTTT GAAGAAGTTCGCCAGGTCGCCGGCCACATCACTCCTGTGCCCGGCGGAGT TGGTCCCATGACGGTGGCCATGCTGATGCACAACACGCTGAAGGCAGCCA GGAAGCAGTTCGATGATCGCAAGTCCTCCTGAAGATTCACCAGTAACTAT CGTGCTTCGCTGGCCGAGAAATAGTATTTTTATTTAATCCCCTAAACCTA TATTAGATAGTAAAGTTACTGACCACAAGCTAACATGACATAAACCCACA TATTTTGCTATATAAACAGAAATAATGAAATAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4868745..4869534 | 954..165 | 3920 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 4868389..4868684 | 1231..948 | 1220 | 94.9 | Minus |
chr3R | 27901430 | chr3R | 4876257..4876423 | 166..1 | 785 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 6526569..6526678 | 927..1036 | 190 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9042852..9043641 | 954..165 | 3950 | 100 | Minus |
3R | 32079331 | 3R | 9042507..9042793 | 1232..946 | 1420 | 99.7 | Minus |
3R | 32079331 | 3R | 9050364..9050529 | 166..1 | 830 | 100 | Minus |
3R | 32079331 | 3R | 10701025..10701134 | 927..1036 | 220 | 80 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8783683..8784472 | 954..165 | 3950 | 100 | Minus |
3R | 31820162 | 3R | 8783338..8783624 | 1232..946 | 1420 | 99.6 | Minus |
3R | 31820162 | 3R | 8791195..8791360 | 166..1 | 830 | 100 | Minus |
3R | 31820162 | 3R | 10441856..10441965 | 927..1036 | 220 | 80 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4868389..4868677 | 955..1231 | 95 | <- | Minus |
chr3R | 4868745..4869532 | 167..954 | 99 | <- | Minus |
chr3R | 4876257..4876423 | 1..166 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmdmc-RB | 1..930 | 153..1082 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmdmc-RB | 1..930 | 153..1082 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmdmc-RB | 1..930 | 153..1082 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmdmc-RB | 1..930 | 153..1082 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmdmc-RB | 1..930 | 153..1082 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmdmc-RB | 21..1251 | 1..1231 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmdmc-RB | 21..1251 | 1..1231 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmdmc-RB | 27..1257 | 1..1231 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmdmc-RB | 21..1251 | 1..1231 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmdmc-RB | 27..1257 | 1..1231 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9042508..9042784 | 955..1231 | 100 | <- | Minus |
3R | 9042852..9043639 | 167..954 | 100 | <- | Minus |
3R | 9050364..9050529 | 1..166 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9042508..9042784 | 955..1231 | 100 | <- | Minus |
3R | 9042852..9043639 | 167..954 | 100 | <- | Minus |
3R | 9050364..9050529 | 1..166 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9042508..9042784 | 955..1231 | 100 | <- | Minus |
3R | 9042852..9043639 | 167..954 | 100 | <- | Minus |
3R | 9050364..9050529 | 1..166 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4868230..4868506 | 955..1231 | 100 | <- | Minus |
arm_3R | 4868574..4869361 | 167..954 | 100 | <- | Minus |
arm_3R | 4876086..4876251 | 1..166 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8783339..8783615 | 955..1231 | 100 | <- | Minus |
3R | 8783683..8784470 | 167..954 | 100 | <- | Minus |
3R | 8791195..8791360 | 1..166 | 100 | Minus |
Translation from 152 to 1081
> GH01066.pep MRFTSNMAQIIDGKAIAQEVRTQLAHELKGMEAAGYPKPHLTAVIVGEDP ASEKYVANKMVACREVGISSETKRLPASTTQEELLQLIADLNKDPQVTGI LVQLPVPEHINERTICNAVDVDKDVDGFNEVNIGRTALDMEANIPATPLG VKRLLEHMKIETLGRNAVVVGRSKNVSLPMAILLHADGKYATKAMDATVT ICHRYTPPKELARHCRQADIIVVAVGKPGLITKDMVKPGACVIDVGINRI KDESTGQFKLVGDVDFEEVRQVAGHITPVPGGVGPMTVAMLMHNTLKAAR KQFDDRKSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18431-PA | 306 | GF18431-PA | 1..296 | 7..302 | 1369 | 87.5 | Plus |
Dana\GF17545-PA | 931 | GF17545-PA | 4..292 | 8..304 | 564 | 46 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17397-PA | 303 | GG17397-PA | 1..303 | 7..309 | 1535 | 95.7 | Plus |
Dere\GG17628-PA | 968 | GG17628-PA | 38..337 | 8..304 | 555 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18238-PA | 303 | GH18238-PA | 1..295 | 7..302 | 1165 | 73.6 | Plus |
Dgri\GH14901-PA | 934 | GH14901-PA | 3..292 | 8..301 | 521 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nmdmc-PB | 309 | CG18466-PB | 1..309 | 1..309 | 1576 | 100 | Plus |
Nmdmc-PC | 303 | CG18466-PC | 1..303 | 7..309 | 1545 | 100 | Plus |
Nmdmc-PA | 303 | CG18466-PA | 1..303 | 7..309 | 1545 | 100 | Plus |
pug-PC | 934 | CG4067-PC | 4..292 | 8..301 | 551 | 45.3 | Plus |
pug-PA | 934 | CG4067-PA | 4..292 | 8..301 | 551 | 45.3 | Plus |
pug-PE | 965 | CG4067-PE | 35..323 | 8..301 | 551 | 45.3 | Plus |
pug-PD | 968 | CG4067-PD | 38..326 | 8..301 | 551 | 45.3 | Plus |
pug-PB | 968 | CG4067-PB | 38..326 | 8..301 | 551 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10194-PA | 301 | GI10194-PA | 1..299 | 7..306 | 1133 | 71.7 | Plus |
Dmoj\GI23694-PA | 935 | GI23694-PA | 5..288 | 8..296 | 545 | 44.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12491-PA | 307 | GL12491-PA | 1..305 | 7..309 | 1247 | 78.4 | Plus |
Dper\GL11980-PA | 970 | GL11980-PA | 34..331 | 2..304 | 559 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14943-PA | 307 | GA14943-PA | 1..305 | 7..309 | 1247 | 78.4 | Plus |
Dpse\GA13173-PA | 970 | GA13173-PA | 34..331 | 2..304 | 559 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26287-PA | 303 | GM26287-PA | 1..303 | 7..309 | 1580 | 99 | Plus |
Dsec\GM23891-PA | 968 | GM23891-PA | 38..329 | 8..304 | 552 | 44.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20823-PA | 303 | GD20823-PA | 1..303 | 7..309 | 1584 | 99.3 | Plus |
Dsim\GD18702-PA | 968 | GD18702-PA | 38..329 | 8..304 | 553 | 44.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23482-PA | 301 | GJ23482-PA | 1..299 | 7..306 | 1168 | 73.3 | Plus |
Dvir\GJ23253-PA | 935 | GJ23253-PA | 5..293 | 8..301 | 543 | 43.8 | Plus |
Translation from 152 to 1081
> GH01066.hyp MRFTSNMAQIIDGKAIAQEVRTQLAHELKGMEAAGYPKPHLTAVIVGEDP ASEKYVANKMVACREVGISSETKRLPASTTQEELLQLIADLNKDPQVTGI LVQLPVPEHINERTICNAVDVDKDVDGFNEVNIGRTALDMEANIPATPLG VKRLLEHMKIETLGRNAVVVGRSKNVSLPMAILLHADGKYATKAMDATVT ICHRYTPPKELARHCRQADIIVVAVGKPGLITKDMVKPGACVIDVGINRI KDESTGQFKLVGDVDFEEVRQVAGHITPVPGGVGPMTVAMLMHNTLKAAR KQFDDRKSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nmdmc-PB | 309 | CG18466-PB | 1..309 | 1..309 | 1576 | 100 | Plus |
Nmdmc-PC | 303 | CG18466-PC | 1..303 | 7..309 | 1545 | 100 | Plus |
Nmdmc-PA | 303 | CG18466-PA | 1..303 | 7..309 | 1545 | 100 | Plus |
pug-PC | 934 | CG4067-PC | 4..292 | 8..301 | 551 | 45.3 | Plus |
pug-PA | 934 | CG4067-PA | 4..292 | 8..301 | 551 | 45.3 | Plus |