Clone GH01077 Report

Search the DGRC for GH01077

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:10
Well:77
Vector:pOT2
Associated Gene/TranscriptCG3731-RA
Protein status:GH01077.pep: gold
Preliminary Size:1618
Sequenced Size:1532

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3731 2001-01-01 Release 2 assignment
CG3731 2001-09-19 Blastp of sequenced clone
CG3731 2003-01-01 Sim4 clustering to Release 3
CG3731 2008-04-29 Release 5.5 accounting
CG3731 2008-08-15 Release 5.9 accounting
CG3731 2008-12-18 5.12 accounting

Clone Sequence Records

GH01077.complete Sequence

1532 bp (1532 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058243

> GH01077.complete
ATAAAACGATGGCGTTGCGAGTTCTTGGCGTGACGCAGAATATGCGCTCC
TTCATGCGGGGCGTTGACATGATCAAACGATACAAGTCGGCTGCCACCCT
ACAGAAGACTCTGCTGAACATACCCGCCACCCAGGTGACCAAGCTGGACA
ACGGTCTCCGCGTGGCTAGCGAGGATTCCGGTGCCTCTACCGCCACCGTG
GGACTGTGGATCGATGCTGGGTCGCGCTCCGAGAACGAGAAGAACAACGG
AGTGGCCCACTTCCTGGAGCACATGGCCTTCAAGGGTACCGCCAAGCGCT
CGCAAACGGATTTGGAGCTGGAGGTTGAGAACCTGGGCGCCCACTTGAAC
GCCTACACTTCCAGGGAGCAGACCGTCTTCTACGCCAAGTGTTTGTCCAA
GGATGTGCCCAAAGCCGTCGAGATCCTGGCCGACATCATCCAGAACTCCA
AGCTGGGTGAGGCTGAGATCGCCCGCGAGCGTTCGGTGATTCTGCGCGAG
ATGCAGGAGGTGGAGAGCAACCTGCAGGAGGTGGTCTTCGATCACCTTCA
CGCCACCGCCTATCAGGGCACTCCTCTGGGCCAGACCATCCTGGGACCCA
CCAAGAACATTCAGTCCATTGGCAAGGCCGATCTGACCGACTACATCCAG
ACCCACTACAAGGCTTCGCGCATCGTTCTGGCCGCTGCTGGCGGCGTCAA
GCACGATGATCTGGTCAAGCTTGCCTGCAGCAGCTTGGGTGGCCTGGAGG
CCAGTGTGCTGCCCGCGGAGGTGACTCCCTGCCGCTTCACCGGCTCCGAG
GTGCGTGTGCGCGACGATTCCCTGCCCCTGGCCCATGTCGCCATCGCCGT
CGAAGGCTGCGGCTGGACCGACCAGGACAACATCCCCCTGATGGTGGCCA
ACACCTTGGTGGGTGCTTGGGATCGTTCCCAAGGCGGTGGCGCCAACAAC
GCCTCCAACCTGGCCCGTGCCAGCGCTGAGGACAACCTTTGCCACAGCTT
CCAATCGTTCAACACATGCTACAAGGACACCGGACTCTGGGGCATTTACT
TCGTGTGCGACCCTCTGCAGTGCGAGGATATGCTCTTCAACGTGCAGACC
GAGTGGATGCGTCTGTGCACCATGGTTACCGAGGCTGAGGTCGAGCGCGC
CAAGAACCTTCTGAAGACCAACATGCTGCTGCAGCTCGACGGCACCACAC
CCATCTGCGAGGACATTGGCCGCCAGATCCTGTGCTACAACCGCCGCATC
CCGCTGCACGAGCTGGAGCAGCGCATCGATGCCGTGAGTGTGGGCAATGT
GCGCGACGTCGCAATGAAGTACATCTACGATCGGTGCCCAGCCGTCGCTG
CCGTGGGTCCCGTTGAGAACCTGCCCGACTACAACAGAATCCGCTCCTCC
ATGTACTGGTTGAGGGTTTAAGAGGTTCCGCCCCGCTGTTGTTGGACATT
GTAGTTTAATTCAAAAGAAAATTTCACCCCCAGAGGATCAGTAAACCGAT
AATACTAAAAGTTAAAAAAAAAAAAAAAAAAA

GH01077.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3731-RA 1801 CG3731-RA 273..1786 1..1514 7570 100 Plus
CG3731-RB 1694 CG3731-RB 166..1679 1..1514 7570 100 Plus
CG3731.b 1620 CG3731.b 92..1605 1..1514 7570 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10716596..10717034 1075..1513 2195 100 Plus
chr3R 27901430 chr3R 10716000..10716370 614..984 1855 100 Plus
chr3R 27901430 chr3R 10715607..10715939 283..615 1635 99.4 Plus
chr3R 27901430 chr3R 10715341..10715548 78..285 1040 100 Plus
chr3R 27901430 chr3R 10716432..10716524 985..1077 465 100 Plus
chr3R 27901430 chr3R 10714995..10715071 1..77 385 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:25:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14891949..14892388 1075..1514 2200 100 Plus
3R 32079331 3R 14891353..14891723 614..984 1855 100 Plus
3R 32079331 3R 14890960..14891292 283..615 1665 100 Plus
3R 32079331 3R 14890696..14890903 78..285 1040 100 Plus
3R 32079331 3R 14891785..14891877 985..1077 465 100 Plus
3R 32079331 3R 14890350..14890426 1..77 385 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14632780..14633219 1075..1514 2200 100 Plus
3R 31820162 3R 14632184..14632554 614..984 1855 100 Plus
3R 31820162 3R 14631791..14632123 283..615 1665 100 Plus
3R 31820162 3R 14631527..14631734 78..285 1040 100 Plus
3R 31820162 3R 14632616..14632708 985..1077 465 100 Plus
3R 31820162 3R 14631181..14631257 1..77 385 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:49:06 has no hits.

GH01077.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:50:12 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10714995..10715071 1..77 100 -> Plus
chr3R 10715341..10715547 78..284 100 -> Plus
chr3R 10715609..10715937 285..613 99 -> Plus
chr3R 10716000..10716370 614..984 100 -> Plus
chr3R 10716432..10716523 985..1076 100 -> Plus
chr3R 10716598..10717034 1077..1513 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:01:54 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3731-RB 1..1413 9..1421 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:56:53 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3731-RB 1..1413 9..1421 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:34 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3731-RA 1..1413 9..1421 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:26:07 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3731-RB 1..1413 9..1421 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:15:41 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3731-RA 1..1413 9..1421 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:43:01 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3731-RB 201..1713 1..1513 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:56:53 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3731-RB 201..1713 1..1513 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:34 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3731-RA 273..1785 1..1513 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:26:07 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3731-RB 201..1713 1..1513 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:15:41 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3731-RA 120..1632 1..1513 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:12 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14891353..14891723 614..984 100 -> Plus
3R 14891785..14891876 985..1076 100 -> Plus
3R 14891951..14892387 1077..1513 100   Plus
3R 14890350..14890426 1..77 100 -> Plus
3R 14890696..14890902 78..284 100 -> Plus
3R 14890962..14891290 285..613 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:12 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14891353..14891723 614..984 100 -> Plus
3R 14891785..14891876 985..1076 100 -> Plus
3R 14891951..14892387 1077..1513 100   Plus
3R 14890350..14890426 1..77 100 -> Plus
3R 14890696..14890902 78..284 100 -> Plus
3R 14890962..14891290 285..613 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:12 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14891353..14891723 614..984 100 -> Plus
3R 14891785..14891876 985..1076 100 -> Plus
3R 14891951..14892387 1077..1513 100   Plus
3R 14890350..14890426 1..77 100 -> Plus
3R 14890696..14890902 78..284 100 -> Plus
3R 14890962..14891290 285..613 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:34 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10716072..10716148 1..77 100 -> Plus
arm_3R 10716418..10716624 78..284 100 -> Plus
arm_3R 10716684..10717012 285..613 100 -> Plus
arm_3R 10717075..10717445 614..984 100 -> Plus
arm_3R 10717507..10717598 985..1076 100 -> Plus
arm_3R 10717673..10718109 1077..1513 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:03:15 Download gff for GH01077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14631527..14631733 78..284 100 -> Plus
3R 14631793..14632121 285..613 100 -> Plus
3R 14632184..14632554 614..984 100 -> Plus
3R 14632616..14632707 985..1076 100 -> Plus
3R 14632782..14633218 1077..1513 100   Plus
3R 14631181..14631257 1..77 100 -> Plus

GH01077.hyp Sequence

Translation from 2 to 1420

> GH01077.hyp
KTMALRVLGVTQNMRSFMRGVDMIKRYKSAATLQKTLLNIPATQVTKLDN
GLRVASEDSGASTATVGLWIDAGSRSENEKNNGVAHFLEHMAFKGTAKRS
QTDLELEVENLGAHLNAYTSREQTVFYAKCLSKDVPKAVEILADIIQNSK
LGEAEIARERSVILREMQEVESNLQEVVFDHLHATAYQGTPLGQTILGPT
KNIQSIGKADLTDYIQTHYKASRIVLAAAGGVKHDDLVKLACSSLGGLEA
SVLPAEVTPCRFTGSEVRVRDDSLPLAHVAIAVEGCGWTDQDNIPLMVAN
TLVGAWDRSQGGGANNASNLARASAEDNLCHSFQSFNTCYKDTGLWGIYF
VCDPLQCEDMLFNVQTEWMRLCTMVTEAEVERAKNLLKTNMLLQLDGTTP
ICEDIGRQILCYNRRIPLHELEQRIDAVSVGNVRDVAMKYIYDRCPAVAA
VGPVENLPDYNRIRSSMYWLRV*

GH01077.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3731-PB 470 CG3731-PB 1..470 3..472 2429 100 Plus
CG3731-PA 470 CG3731-PA 1..470 3..472 2429 100 Plus
CG8728-PA 556 CG8728-PA 94..540 43..467 454 28.5 Plus
CG4169-PB 440 CG4169-PB 20..434 31..458 208 21.6 Plus
CG4169-PA 440 CG4169-PA 20..434 31..458 208 21.6 Plus

GH01077.pep Sequence

Translation from 8 to 1420

> GH01077.pep
MALRVLGVTQNMRSFMRGVDMIKRYKSAATLQKTLLNIPATQVTKLDNGL
RVASEDSGASTATVGLWIDAGSRSENEKNNGVAHFLEHMAFKGTAKRSQT
DLELEVENLGAHLNAYTSREQTVFYAKCLSKDVPKAVEILADIIQNSKLG
EAEIARERSVILREMQEVESNLQEVVFDHLHATAYQGTPLGQTILGPTKN
IQSIGKADLTDYIQTHYKASRIVLAAAGGVKHDDLVKLACSSLGGLEASV
LPAEVTPCRFTGSEVRVRDDSLPLAHVAIAVEGCGWTDQDNIPLMVANTL
VGAWDRSQGGGANNASNLARASAEDNLCHSFQSFNTCYKDTGLWGIYFVC
DPLQCEDMLFNVQTEWMRLCTMVTEAEVERAKNLLKTNMLLQLDGTTPIC
EDIGRQILCYNRRIPLHELEQRIDAVSVGNVRDVAMKYIYDRCPAVAAVG
PVENLPDYNRIRSSMYWLRV*

GH01077.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16898-PA 470 GF16898-PA 1..470 1..470 2492 97.7 Plus
Dana\GF11230-PA 555 GF11230-PA 93..539 41..465 450 29.9 Plus
Dana\GF23920-PA 439 GF23920-PA 28..433 37..456 188 22 Plus
Dana\GF19439-PA 1107 GF19439-PA 107..297 62..246 174 27.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16882-PA 470 GG16882-PA 1..470 1..470 2518 99.1 Plus
Dere\GG10696-PA 556 GG10696-PA 94..540 41..465 444 28.9 Plus
Dere\GG13564-PA 440 GG13564-PA 20..434 29..456 193 22.1 Plus
Dere\GG18826-PA 1093 GG18826-PA 95..277 62..238 180 28.8 Plus
Dere\GG16150-PA 1058 GG16150-PA 76..263 51..225 168 28.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18338-PA 470 GH18338-PA 1..470 1..470 2425 94.9 Plus
Dgri\GH20583-PA 555 GH20583-PA 82..540 29..465 468 31 Plus
Dgri\GH15899-PA 443 GH15899-PA 20..437 29..456 213 22.7 Plus
Dgri\GH24288-PA 1109 GH24288-PA 94..294 55..249 165 25.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
UQCR-C1-PB 470 CG3731-PB 1..470 1..470 2429 100 Plus
UQCR-C1-PA 470 CG3731-PA 1..470 1..470 2429 100 Plus
CG8728-PA 556 CG8728-PA 94..540 41..465 454 28.5 Plus
UQCR-C2-PB 440 CG4169-PB 20..434 29..456 208 21.6 Plus
UQCR-C2-PA 440 CG4169-PA 20..434 29..456 208 21.6 Plus
Nrd1-PA 1147 CG2025-PA 127..326 53..246 188 26.5 Plus
CG10588-PB 1058 CG10588-PB 82..276 50..238 170 26 Plus
CG10588-PA 1058 CG10588-PA 82..276 50..238 170 26 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23318-PA 470 GI23318-PA 1..470 1..470 2446 95.5 Plus
Dmoj\GI19728-PA 554 GI19728-PA 82..540 29..465 463 30.5 Plus
Dmoj\GI13200-PA 1047 GI13200-PA 52..264 51..252 177 27.6 Plus
Dmoj\GI16413-PA 1101 GI16413-PA 88..289 54..249 175 26.5 Plus
Dmoj\GI16551-PA 441 GI16551-PA 34..435 43..456 163 24 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23853-PA 470 GL23853-PA 1..470 1..470 2413 94.3 Plus
Dper\GL26015-PA 820 GL26015-PA 85..534 40..465 465 30.2 Plus
Dper\GL10384-PA 555 GL10384-PA 92..539 40..465 445 30.4 Plus
Dper\GL17869-PA 441 GL17869-PA 20..435 29..456 230 23.9 Plus
Dper\GL23351-PA 441 GL23351-PA 28..435 37..456 225 24.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17647-PA 470 GA17647-PA 1..470 1..470 2426 94.9 Plus
Dpse\GA25237-PA 820 GA25237-PA 41..534 14..465 462 29.2 Plus
Dpse\GA25238-PA 820 GA25238-PA 41..534 14..465 459 29 Plus
Dpse\GA21285-PA 555 GA21285-PA 92..539 40..465 445 30.4 Plus
Dpse\GA18004-PA 441 GA18004-PA 20..435 29..456 233 23.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24191-PA 470 GM24191-PA 1..470 1..470 2534 100 Plus
Dsec\GM20744-PA 556 GM20744-PA 94..540 41..465 436 29.2 Plus
Dsec\GM13038-PA 1063 GM13038-PA 94..284 62..246 181 28.1 Plus
Dsec\GM22333-PA 649 GM22333-PA 35..237 28..225 163 24.4 Plus
Dsec\GM25644-PA 436 GM25644-PA 20..430 29..456 162 20.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18983-PA 470 GD18983-PA 1..470 1..470 2534 100 Plus
Dsim\GD10210-PA 556 GD10210-PA 94..540 41..465 436 29.2 Plus
Dsim\GD15963-PA 1410 GD15963-PA 94..284 62..246 195 28.6 Plus
Dsim\GD17647-PA 357 GD17647-PA 35..237 28..225 168 24.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10322-PA 470 GJ10322-PA 1..470 1..470 2435 95.1 Plus
Dvir\GJ14966-PA 397 GJ14966-PA 16..382 105..465 324 27.7 Plus
Dvir\GJ12803-PA 441 GJ12803-PA 20..435 29..456 186 22.6 Plus
Dvir\GJ17034-PA 1098 GJ17034-PA 96..289 62..249 163 26 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13463-PA 470 GK13463-PA 1..470 1..470 2459 96.4 Plus
Dwil\GK21348-PA 559 GK21348-PA 85..543 29..465 434 28.8 Plus
Dwil\GK20075-PA 441 GK20075-PA 20..435 29..456 202 22.7 Plus
Dwil\GK18555-PA 1066 GK18555-PA 89..294 54..253 167 25.1 Plus
Dwil\GK13929-PA 1081 GK13929-PA 106..274 62..224 161 30.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24263-PA 470 GE24263-PA 1..470 1..470 2518 98.9 Plus
Dyak\GE23498-PA 556 GE23498-PA 94..540 41..465 446 29.8 Plus
Dyak\GE19862-PA 440 GE19862-PA 20..434 29..456 208 23 Plus
Dyak\GE17590-PA 1093 GE17590-PA 87..286 53..246 186 27.4 Plus
Dyak\GE19720-PA 327 GE19720-PA 68..237 62..225 159 28.1 Plus