Clone GH01087 Report

Search the DGRC for GH01087

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:10
Well:87
Vector:pOT2
Associated Gene/TranscriptNup93-2-RA
Protein status:GH01087.pep: gold
Preliminary Size:2452
Sequenced Size:2475

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7262 2001-01-01 Release 2 assignment
CG7262 2001-09-19 Blastp of sequenced clone
CG7262 2003-01-01 Sim4 clustering to Release 3
CG7262 2008-04-29 Release 5.5 accounting
CG7262 2008-08-15 Release 5.9 accounting
CG7262 2008-12-18 5.12 accounting

Clone Sequence Records

GH01087.complete Sequence

2475 bp (2475 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058244

> GH01087.complete
ATCTTGCCGCTGCTTTTGGACTCAACTTTATTTATTTGCAAAAATGGACC
TGAACACTCTGCTGCAGCGCGCCCAGAACCTGAACAATGACGCGAAGGCA
GAGTGCGAGCTGCCCGCCGTGGAGCGGACGCTTCAGCAGGTCCTGCGGGC
CACCACGGAGCTCCACTCCCGCGTCACCCAAACCGGCTGCAAAGAGATCC
AGGCTCACATACTGCTGGGCTCCAAGGGCGTGGACCTGCCCAAGCTGAAC
CAGAAGCTGGAGGCGCTGAGTGCCCGGAAAACCTTCGAGCCGCTAGACGT
AAAGGCGGACACGGATGTGCGCACATTCCTGAAGAACGAACGCGAGAATG
CAATTCTCTCGGTGATCGAGGACACGAAAAAGAATATCAGCGACTCTGCG
AACAAGCAGAGGTGGGCCAGTATGAACAAAGTATGGAACGAGGAGAAGAC
CCGCCTGCTGGACGCCTTAATTGCGCCGTCACAGAACTTTATCGACCTAC
AACGGCTGCCGGAACCCACCATCGTAAATCCGCTTTGTCAGCCACGTTCC
TGCCTCGATCCGCTGGAACTAGTGTATGCGCAAGAGTTGCGGCATTACAA
TGAACTGCTGCTTAAGAGCAGCCATCGACCCAATCTCGTCCAAAAGTTCG
CTCATCTGTCCCAGAGCTTCGGAGATTGCCGGCTTACGGACATGTGGACC
CTGCTGGCTTGCGTCACCCAAATCAGCGAGCCGCTGCGCAGTGACCCCAT
CAAGAGCCGACAGCAAAGACCGGAGTTTGTTACCTATGCTAAATCGTACC
TAGAACGGCGCTATCGTGTGTTCATGTGCTCCCAAGTCGGTGGATCCTAT
GCCAACAACAGCTATCAGTTGGTTGTGGCCTATGTAAACCACCGGTTCAG
AGCACAGCAGACCATCGGACTTGTGGACACCGTCCGCGAAATACCCTTAT
GGCCGCTGGTTTACTACGGATTGCGCTGCGGAGCGGTTAAGGTGGCGGTT
GAGTTCCTGCGCGAAGCGGGCAGTAGCCACGATGAGTTTGCCCAGCTCGT
TGCAGATCGCAATGCCGGCGAAACCAATTCCAAAATAGAAAACCAACTGC
GACTGCAGTACGCCAACAAAATACGCAACTCCACCGATGCCTATAAGAAG
GCCGTTTACTGCATCCTTTTGGGCTGCGATGTCAATGAAGTACACGGAGA
AGTGGCCAAGACCATAGACGACTTCCTTTGGATGCGGCTGGCCATGATAC
AGCCCGGTGACGCTGACAACTATGGTAAACTGCAGTCAATGATTTTGGAA
CAGTATGGTGAAAAGTACTTCAATGCTAGGCAGCAGCCGTATCTCTACTT
CGAGACCCTTGCATTAACCGGCCAGTTTGAAGCCGCCATCGAGTTCCTGG
CGCGCCAAGATGAAAATCGGGCACATGCAGTTCACATGGCCATAGCGCTG
TTTGAGCTAGGACTTCTAGGCAGTGCGCGCAGTGTGTCGCAGCCCCTGCT
TTCGATCGATATTAAAGATCCGCAGCCACTGAGGCGCTTGAACCTAACTC
GGCTTATCCGACAGTATGTGCAGCGATTTGAGCGGACAGACACCTCGGAG
GCGCTGCATTACTACTACACACTGCGCTGTCTGAAGGATTCCAAGGGCCG
GAACATGTTTATGGCCTGTGTGTGCGATCTTGTGGTGGACAGCGGAGTCT
TTGATACCACCATTTTCGATCTGATATTCGGCAAGCGGCAGTCGAGTGAC
CAAAACGATGTTAACAGTGGACTCTTCCGCCAGTTCGAATGCCCGGAGTT
CGACACGCGCACCATGGCCGCTCAGGTGGGCGACGAACTGGCTGCGCTGG
GTAACTTTGAGATGTCGGCGCGGCTGTACGAAATGGCGGGCAAGTACAAC
CTGGCCGTGAAGCACATCTGCATTCTGATGGCCCAGGTGGTGCACCTGCC
CACGCTAGGTGGATCGTTAAGGGAACGCCTTGGCCAAGACGCTCAGAGAT
TCAACCAGCTGCTGGCTAGCGACAGCATCGATGTGGAACCCAAGATGAAG
AGCAGCTTTGTGCTGCTGCAGGATCTGCTTATCTTCTTCAACTTCTATCA
TGACGGAAAATTTAATGCAGCGTTGGATCTGCTCAGGCAAACCCAGTTGG
TGCCCAATACGTTGGACGATGTCGATGTTGTACTGGGCAATGTGAAGCAA
CTTAGCGGCGAGGTAATCAAGGTCCTGCCCGACGTTATAGTGGCCGCCAT
GGAGATCGCCCAGAAGCAGTACAAGCAGCTGAAGGCAGGATCAGGCAGCT
CGCTGGAACAGACCCAGATGCAGCAACTCCGGCAGCGAGCCAAAGCCCTG
TCCAACATGGCAGCAACTATGCCGTATCGCCTGCCCAACGACACGAACAA
GCGACTGATTGAACTCGAACTGGATATGCACTAAAATAAATATACTTTAA
GGGATAAAAAAAAAAAAAAAAAAAA

GH01087.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7262-RA 2559 CG7262-RA 73..2530 1..2458 12290 100 Plus
CG14860-RB 1626 CG14860-RB 880..1572 2458..1766 3465 100 Minus
CG11092-RA 2978 CG11092-RA 270..425 137..292 375 82.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10721100..10722481 1767..386 6910 100 Minus
chr3R 27901430 chr3R 10720350..10721039 2455..1766 3420 99.7 Minus
chr3R 27901430 chr3R 10722774..10722977 204..1 1020 100 Minus
chr3R 27901430 chr3R 10722535..10722715 385..205 905 100 Minus
chrX 22417052 chrX 13713865..13714037 206..378 310 78.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:25:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14896453..14897834 1767..386 6910 100 Minus
3R 32079331 3R 14895700..14896392 2458..1766 3465 100 Minus
3R 32079331 3R 14898127..14898330 204..1 1020 100 Minus
3R 32079331 3R 14897888..14898068 385..205 905 100 Minus
X 23542271 X 13823152..13823324 206..378 310 78.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14637284..14638665 1767..386 6910 100 Minus
3R 31820162 3R 14636531..14637223 2458..1766 3465 100 Minus
3R 31820162 3R 14638958..14639161 204..1 1020 100 Minus
3R 31820162 3R 14638719..14638899 385..205 905 100 Minus
X 23527363 X 13831250..13831336 206..292 285 88.5 Plus
Blast to na_te.dros performed on 2019-03-16 10:15:23 has no hits.

GH01087.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:16:05 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10720350..10721037 1768..2455 99 <- Minus
chr3R 10721100..10722481 386..1767 100 <- Minus
chr3R 10722535..10722715 205..385 100 <- Minus
chr3R 10722774..10722977 1..204 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:02:04 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7262-RA 1..2391 44..2434 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:52 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7262-RA 1..2391 44..2434 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:58:58 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
Nup93-2-RA 1..2391 44..2434 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:53 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7262-RA 1..2391 44..2434 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:19 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
Nup93-2-RA 1..2391 44..2434 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:02:19 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7262-RA 39..2490 1..2452 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:52 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7262-RA 39..2493 1..2455 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:58 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
Nup93-2-RA 39..2493 1..2455 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:53 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7262-RA 39..2490 1..2452 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:19 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
Nup93-2-RA 43..2497 1..2455 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:05 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14897888..14898068 205..385 100 <- Minus
3R 14898127..14898330 1..204 100   Minus
3R 14895703..14896390 1768..2455 100 <- Minus
3R 14896453..14897834 386..1767 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:05 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14897888..14898068 205..385 100 <- Minus
3R 14898127..14898330 1..204 100   Minus
3R 14895703..14896390 1768..2455 100 <- Minus
3R 14896453..14897834 386..1767 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:05 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14897888..14898068 205..385 100 <- Minus
3R 14898127..14898330 1..204 100   Minus
3R 14895703..14896390 1768..2455 100 <- Minus
3R 14896453..14897834 386..1767 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:58 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10723610..10723790 205..385 100 <- Minus
arm_3R 10723849..10724052 1..204 100   Minus
arm_3R 10721425..10722112 1768..2455 100 <- Minus
arm_3R 10722175..10723556 386..1767 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:19:26 Download gff for GH01087.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14638958..14639161 1..204 100   Minus
3R 14636534..14637221 1768..2455 100 <- Minus
3R 14637284..14638665 386..1767 100 <- Minus
3R 14638719..14638899 205..385 100 <- Minus

GH01087.hyp Sequence

Translation from 1 to 2433

> GH01087.hyp
SCRCFWTQLYLFAKMDLNTLLQRAQNLNNDAKAECELPAVERTLQQVLRA
TTELHSRVTQTGCKEIQAHILLGSKGVDLPKLNQKLEALSARKTFEPLDV
KADTDVRTFLKNERENAILSVIEDTKKNISDSANKQRWASMNKVWNEEKT
RLLDALIAPSQNFIDLQRLPEPTIVNPLCQPRSCLDPLELVYAQELRHYN
ELLLKSSHRPNLVQKFAHLSQSFGDCRLTDMWTLLACVTQISEPLRSDPI
KSRQQRPEFVTYAKSYLERRYRVFMCSQVGGSYANNSYQLVVAYVNHRFR
AQQTIGLVDTVREIPLWPLVYYGLRCGAVKVAVEFLREAGSSHDEFAQLV
ADRNAGETNSKIENQLRLQYANKIRNSTDAYKKAVYCILLGCDVNEVHGE
VAKTIDDFLWMRLAMIQPGDADNYGKLQSMILEQYGEKYFNARQQPYLYF
ETLALTGQFEAAIEFLARQDENRAHAVHMAIALFELGLLGSARSVSQPLL
SIDIKDPQPLRRLNLTRLIRQYVQRFERTDTSEALHYYYTLRCLKDSKGR
NMFMACVCDLVVDSGVFDTTIFDLIFGKRQSSDQNDVNSGLFRQFECPEF
DTRTMAAQVGDELAALGNFEMSARLYEMAGKYNLAVKHICILMAQVVHLP
TLGGSLRERLGQDAQRFNQLLASDSIDVEPKMKSSFVLLQDLLIFFNFYH
DGKFNAALDLLRQTQLVPNTLDDVDVVLGNVKQLSGEVIKVLPDVIVAAM
EIAQKQYKQLKAGSGSSLEQTQMQQLRQRAKALSNMAATMPYRLPNDTNK
RLIELELDMH*

GH01087.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
Nup93-2-PA 796 CG7262-PA 1..796 15..810 4078 100 Plus
Nup93-1-PA 823 CG11092-PA 1..823 15..810 1725 44.5 Plus

GH01087.pep Sequence

Translation from 43 to 2433

> GH01087.pep
MDLNTLLQRAQNLNNDAKAECELPAVERTLQQVLRATTELHSRVTQTGCK
EIQAHILLGSKGVDLPKLNQKLEALSARKTFEPLDVKADTDVRTFLKNER
ENAILSVIEDTKKNISDSANKQRWASMNKVWNEEKTRLLDALIAPSQNFI
DLQRLPEPTIVNPLCQPRSCLDPLELVYAQELRHYNELLLKSSHRPNLVQ
KFAHLSQSFGDCRLTDMWTLLACVTQISEPLRSDPIKSRQQRPEFVTYAK
SYLERRYRVFMCSQVGGSYANNSYQLVVAYVNHRFRAQQTIGLVDTVREI
PLWPLVYYGLRCGAVKVAVEFLREAGSSHDEFAQLVADRNAGETNSKIEN
QLRLQYANKIRNSTDAYKKAVYCILLGCDVNEVHGEVAKTIDDFLWMRLA
MIQPGDADNYGKLQSMILEQYGEKYFNARQQPYLYFETLALTGQFEAAIE
FLARQDENRAHAVHMAIALFELGLLGSARSVSQPLLSIDIKDPQPLRRLN
LTRLIRQYVQRFERTDTSEALHYYYTLRCLKDSKGRNMFMACVCDLVVDS
GVFDTTIFDLIFGKRQSSDQNDVNSGLFRQFECPEFDTRTMAAQVGDELA
ALGNFEMSARLYEMAGKYNLAVKHICILMAQVVHLPTLGGSLRERLGQDA
QRFNQLLASDSIDVEPKMKSSFVLLQDLLIFFNFYHDGKFNAALDLLRQT
QLVPNTLDDVDVVLGNVKQLSGEVIKVLPDVIVAAMEIAQKQYKQLKAGS
GSSLEQTQMQQLRQRAKALSNMAATMPYRLPNDTNKRLIELELDMH*

GH01087.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23143-PA 796 GF23143-PA 1..796 1..796 3140 74.3 Plus
Dana\GF19214-PA 824 GF19214-PA 1..824 1..796 1858 46.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21001-PA 796 GG21001-PA 1..796 1..796 3899 90.7 Plus
Dere\GG17817-PA 824 GG17817-PA 1..824 1..796 1860 46.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18990-PA 797 GH18990-PA 1..797 1..796 2701 65.4 Plus
Dgri\GH17674-PA 845 GH17674-PA 1..845 1..796 1725 43.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
Nup93-2-PA 796 CG7262-PA 1..796 1..796 4078 100 Plus
Nup93-1-PA 823 CG11092-PA 1..823 1..796 1725 44.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24492-PA 799 GI24492-PA 1..799 1..796 2671 64.7 Plus
Dmoj\GI21492-PA 842 GI21492-PA 3..842 1..796 1761 44.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12381-PA 798 GL12381-PA 1..798 1..796 2915 67.5 Plus
Dper\GL12243-PA 635 GL12243-PA 1..573 1..573 2249 71.6 Plus
Dper\GL14821-PA 828 GL14821-PA 1..828 1..796 1744 43.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20219-PA 798 GA20219-PA 1..798 1..796 2925 67.8 Plus
Dpse\GA27489-PA 798 GA27489-PA 1..798 1..796 2918 67.7 Plus
Dpse\GA10753-PA 828 GA10753-PA 1..828 1..796 1760 44.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25817-PA 794 GM25817-PA 1..794 1..796 4039 94.6 Plus
Dsec\GM17645-PA 822 GM17645-PA 1..822 1..796 1745 43.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20393-PA 796 GD20393-PA 1..796 1..796 4042 94.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24557-PA 798 GJ24557-PA 1..798 1..796 2879 68.7 Plus
Dvir\GJ19033-PA 838 GJ19033-PA 1..838 1..796 1830 45.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22778-PA 804 GK22778-PA 1..804 1..796 2851 66.5 Plus
Dwil\GK24989-PA 832 GK24989-PA 1..832 1..796 1889 47 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26422-PA 796 GE26422-PA 1..796 1..796 3928 91.3 Plus
Dyak\GE17112-PA 824 GE17112-PA 1..824 1..796 1858 46.3 Plus