BDGP Sequence Production Resources |
Search the DGRC for GH01087
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 10 |
Well: | 87 |
Vector: | pOT2 |
Associated Gene/Transcript | Nup93-2-RA |
Protein status: | GH01087.pep: gold |
Preliminary Size: | 2452 |
Sequenced Size: | 2475 |
Gene | Date | Evidence |
---|---|---|
CG7262 | 2001-01-01 | Release 2 assignment |
CG7262 | 2001-09-19 | Blastp of sequenced clone |
CG7262 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7262 | 2008-04-29 | Release 5.5 accounting |
CG7262 | 2008-08-15 | Release 5.9 accounting |
CG7262 | 2008-12-18 | 5.12 accounting |
2475 bp (2475 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058244
> GH01087.complete ATCTTGCCGCTGCTTTTGGACTCAACTTTATTTATTTGCAAAAATGGACC TGAACACTCTGCTGCAGCGCGCCCAGAACCTGAACAATGACGCGAAGGCA GAGTGCGAGCTGCCCGCCGTGGAGCGGACGCTTCAGCAGGTCCTGCGGGC CACCACGGAGCTCCACTCCCGCGTCACCCAAACCGGCTGCAAAGAGATCC AGGCTCACATACTGCTGGGCTCCAAGGGCGTGGACCTGCCCAAGCTGAAC CAGAAGCTGGAGGCGCTGAGTGCCCGGAAAACCTTCGAGCCGCTAGACGT AAAGGCGGACACGGATGTGCGCACATTCCTGAAGAACGAACGCGAGAATG CAATTCTCTCGGTGATCGAGGACACGAAAAAGAATATCAGCGACTCTGCG AACAAGCAGAGGTGGGCCAGTATGAACAAAGTATGGAACGAGGAGAAGAC CCGCCTGCTGGACGCCTTAATTGCGCCGTCACAGAACTTTATCGACCTAC AACGGCTGCCGGAACCCACCATCGTAAATCCGCTTTGTCAGCCACGTTCC TGCCTCGATCCGCTGGAACTAGTGTATGCGCAAGAGTTGCGGCATTACAA TGAACTGCTGCTTAAGAGCAGCCATCGACCCAATCTCGTCCAAAAGTTCG CTCATCTGTCCCAGAGCTTCGGAGATTGCCGGCTTACGGACATGTGGACC CTGCTGGCTTGCGTCACCCAAATCAGCGAGCCGCTGCGCAGTGACCCCAT CAAGAGCCGACAGCAAAGACCGGAGTTTGTTACCTATGCTAAATCGTACC TAGAACGGCGCTATCGTGTGTTCATGTGCTCCCAAGTCGGTGGATCCTAT GCCAACAACAGCTATCAGTTGGTTGTGGCCTATGTAAACCACCGGTTCAG AGCACAGCAGACCATCGGACTTGTGGACACCGTCCGCGAAATACCCTTAT GGCCGCTGGTTTACTACGGATTGCGCTGCGGAGCGGTTAAGGTGGCGGTT GAGTTCCTGCGCGAAGCGGGCAGTAGCCACGATGAGTTTGCCCAGCTCGT TGCAGATCGCAATGCCGGCGAAACCAATTCCAAAATAGAAAACCAACTGC GACTGCAGTACGCCAACAAAATACGCAACTCCACCGATGCCTATAAGAAG GCCGTTTACTGCATCCTTTTGGGCTGCGATGTCAATGAAGTACACGGAGA AGTGGCCAAGACCATAGACGACTTCCTTTGGATGCGGCTGGCCATGATAC AGCCCGGTGACGCTGACAACTATGGTAAACTGCAGTCAATGATTTTGGAA CAGTATGGTGAAAAGTACTTCAATGCTAGGCAGCAGCCGTATCTCTACTT CGAGACCCTTGCATTAACCGGCCAGTTTGAAGCCGCCATCGAGTTCCTGG CGCGCCAAGATGAAAATCGGGCACATGCAGTTCACATGGCCATAGCGCTG TTTGAGCTAGGACTTCTAGGCAGTGCGCGCAGTGTGTCGCAGCCCCTGCT TTCGATCGATATTAAAGATCCGCAGCCACTGAGGCGCTTGAACCTAACTC GGCTTATCCGACAGTATGTGCAGCGATTTGAGCGGACAGACACCTCGGAG GCGCTGCATTACTACTACACACTGCGCTGTCTGAAGGATTCCAAGGGCCG GAACATGTTTATGGCCTGTGTGTGCGATCTTGTGGTGGACAGCGGAGTCT TTGATACCACCATTTTCGATCTGATATTCGGCAAGCGGCAGTCGAGTGAC CAAAACGATGTTAACAGTGGACTCTTCCGCCAGTTCGAATGCCCGGAGTT CGACACGCGCACCATGGCCGCTCAGGTGGGCGACGAACTGGCTGCGCTGG GTAACTTTGAGATGTCGGCGCGGCTGTACGAAATGGCGGGCAAGTACAAC CTGGCCGTGAAGCACATCTGCATTCTGATGGCCCAGGTGGTGCACCTGCC CACGCTAGGTGGATCGTTAAGGGAACGCCTTGGCCAAGACGCTCAGAGAT TCAACCAGCTGCTGGCTAGCGACAGCATCGATGTGGAACCCAAGATGAAG AGCAGCTTTGTGCTGCTGCAGGATCTGCTTATCTTCTTCAACTTCTATCA TGACGGAAAATTTAATGCAGCGTTGGATCTGCTCAGGCAAACCCAGTTGG TGCCCAATACGTTGGACGATGTCGATGTTGTACTGGGCAATGTGAAGCAA CTTAGCGGCGAGGTAATCAAGGTCCTGCCCGACGTTATAGTGGCCGCCAT GGAGATCGCCCAGAAGCAGTACAAGCAGCTGAAGGCAGGATCAGGCAGCT CGCTGGAACAGACCCAGATGCAGCAACTCCGGCAGCGAGCCAAAGCCCTG TCCAACATGGCAGCAACTATGCCGTATCGCCTGCCCAACGACACGAACAA GCGACTGATTGAACTCGAACTGGATATGCACTAAAATAAATATACTTTAA GGGATAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7262-RA | 2559 | CG7262-RA | 73..2530 | 1..2458 | 12290 | 100 | Plus |
CG14860-RB | 1626 | CG14860-RB | 880..1572 | 2458..1766 | 3465 | 100 | Minus |
CG11092-RA | 2978 | CG11092-RA | 270..425 | 137..292 | 375 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 10721100..10722481 | 1767..386 | 6910 | 100 | Minus |
chr3R | 27901430 | chr3R | 10720350..10721039 | 2455..1766 | 3420 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 10722774..10722977 | 204..1 | 1020 | 100 | Minus |
chr3R | 27901430 | chr3R | 10722535..10722715 | 385..205 | 905 | 100 | Minus |
chrX | 22417052 | chrX | 13713865..13714037 | 206..378 | 310 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 14896453..14897834 | 1767..386 | 6910 | 100 | Minus |
3R | 32079331 | 3R | 14895700..14896392 | 2458..1766 | 3465 | 100 | Minus |
3R | 32079331 | 3R | 14898127..14898330 | 204..1 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 14897888..14898068 | 385..205 | 905 | 100 | Minus |
X | 23542271 | X | 13823152..13823324 | 206..378 | 310 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 14637284..14638665 | 1767..386 | 6910 | 100 | Minus |
3R | 31820162 | 3R | 14636531..14637223 | 2458..1766 | 3465 | 100 | Minus |
3R | 31820162 | 3R | 14638958..14639161 | 204..1 | 1020 | 100 | Minus |
3R | 31820162 | 3R | 14638719..14638899 | 385..205 | 905 | 100 | Minus |
X | 23527363 | X | 13831250..13831336 | 206..292 | 285 | 88.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 10720350..10721037 | 1768..2455 | 99 | <- | Minus |
chr3R | 10721100..10722481 | 386..1767 | 100 | <- | Minus |
chr3R | 10722535..10722715 | 205..385 | 100 | <- | Minus |
chr3R | 10722774..10722977 | 1..204 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7262-RA | 1..2391 | 44..2434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7262-RA | 1..2391 | 44..2434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup93-2-RA | 1..2391 | 44..2434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7262-RA | 1..2391 | 44..2434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup93-2-RA | 1..2391 | 44..2434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7262-RA | 39..2490 | 1..2452 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7262-RA | 39..2493 | 1..2455 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup93-2-RA | 39..2493 | 1..2455 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7262-RA | 39..2490 | 1..2452 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup93-2-RA | 43..2497 | 1..2455 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14897888..14898068 | 205..385 | 100 | <- | Minus |
3R | 14898127..14898330 | 1..204 | 100 | Minus | |
3R | 14895703..14896390 | 1768..2455 | 100 | <- | Minus |
3R | 14896453..14897834 | 386..1767 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14897888..14898068 | 205..385 | 100 | <- | Minus |
3R | 14898127..14898330 | 1..204 | 100 | Minus | |
3R | 14895703..14896390 | 1768..2455 | 100 | <- | Minus |
3R | 14896453..14897834 | 386..1767 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14897888..14898068 | 205..385 | 100 | <- | Minus |
3R | 14898127..14898330 | 1..204 | 100 | Minus | |
3R | 14895703..14896390 | 1768..2455 | 100 | <- | Minus |
3R | 14896453..14897834 | 386..1767 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 10723610..10723790 | 205..385 | 100 | <- | Minus |
arm_3R | 10723849..10724052 | 1..204 | 100 | Minus | |
arm_3R | 10721425..10722112 | 1768..2455 | 100 | <- | Minus |
arm_3R | 10722175..10723556 | 386..1767 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14638958..14639161 | 1..204 | 100 | Minus | |
3R | 14636534..14637221 | 1768..2455 | 100 | <- | Minus |
3R | 14637284..14638665 | 386..1767 | 100 | <- | Minus |
3R | 14638719..14638899 | 205..385 | 100 | <- | Minus |
Translation from 1 to 2433
> GH01087.hyp SCRCFWTQLYLFAKMDLNTLLQRAQNLNNDAKAECELPAVERTLQQVLRA TTELHSRVTQTGCKEIQAHILLGSKGVDLPKLNQKLEALSARKTFEPLDV KADTDVRTFLKNERENAILSVIEDTKKNISDSANKQRWASMNKVWNEEKT RLLDALIAPSQNFIDLQRLPEPTIVNPLCQPRSCLDPLELVYAQELRHYN ELLLKSSHRPNLVQKFAHLSQSFGDCRLTDMWTLLACVTQISEPLRSDPI KSRQQRPEFVTYAKSYLERRYRVFMCSQVGGSYANNSYQLVVAYVNHRFR AQQTIGLVDTVREIPLWPLVYYGLRCGAVKVAVEFLREAGSSHDEFAQLV ADRNAGETNSKIENQLRLQYANKIRNSTDAYKKAVYCILLGCDVNEVHGE VAKTIDDFLWMRLAMIQPGDADNYGKLQSMILEQYGEKYFNARQQPYLYF ETLALTGQFEAAIEFLARQDENRAHAVHMAIALFELGLLGSARSVSQPLL SIDIKDPQPLRRLNLTRLIRQYVQRFERTDTSEALHYYYTLRCLKDSKGR NMFMACVCDLVVDSGVFDTTIFDLIFGKRQSSDQNDVNSGLFRQFECPEF DTRTMAAQVGDELAALGNFEMSARLYEMAGKYNLAVKHICILMAQVVHLP TLGGSLRERLGQDAQRFNQLLASDSIDVEPKMKSSFVLLQDLLIFFNFYH DGKFNAALDLLRQTQLVPNTLDDVDVVLGNVKQLSGEVIKVLPDVIVAAM EIAQKQYKQLKAGSGSSLEQTQMQQLRQRAKALSNMAATMPYRLPNDTNK RLIELELDMH*
Translation from 43 to 2433
> GH01087.pep MDLNTLLQRAQNLNNDAKAECELPAVERTLQQVLRATTELHSRVTQTGCK EIQAHILLGSKGVDLPKLNQKLEALSARKTFEPLDVKADTDVRTFLKNER ENAILSVIEDTKKNISDSANKQRWASMNKVWNEEKTRLLDALIAPSQNFI DLQRLPEPTIVNPLCQPRSCLDPLELVYAQELRHYNELLLKSSHRPNLVQ KFAHLSQSFGDCRLTDMWTLLACVTQISEPLRSDPIKSRQQRPEFVTYAK SYLERRYRVFMCSQVGGSYANNSYQLVVAYVNHRFRAQQTIGLVDTVREI PLWPLVYYGLRCGAVKVAVEFLREAGSSHDEFAQLVADRNAGETNSKIEN QLRLQYANKIRNSTDAYKKAVYCILLGCDVNEVHGEVAKTIDDFLWMRLA MIQPGDADNYGKLQSMILEQYGEKYFNARQQPYLYFETLALTGQFEAAIE FLARQDENRAHAVHMAIALFELGLLGSARSVSQPLLSIDIKDPQPLRRLN LTRLIRQYVQRFERTDTSEALHYYYTLRCLKDSKGRNMFMACVCDLVVDS GVFDTTIFDLIFGKRQSSDQNDVNSGLFRQFECPEFDTRTMAAQVGDELA ALGNFEMSARLYEMAGKYNLAVKHICILMAQVVHLPTLGGSLRERLGQDA QRFNQLLASDSIDVEPKMKSSFVLLQDLLIFFNFYHDGKFNAALDLLRQT QLVPNTLDDVDVVLGNVKQLSGEVIKVLPDVIVAAMEIAQKQYKQLKAGS GSSLEQTQMQQLRQRAKALSNMAATMPYRLPNDTNKRLIELELDMH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23143-PA | 796 | GF23143-PA | 1..796 | 1..796 | 3140 | 74.3 | Plus |
Dana\GF19214-PA | 824 | GF19214-PA | 1..824 | 1..796 | 1858 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21001-PA | 796 | GG21001-PA | 1..796 | 1..796 | 3899 | 90.7 | Plus |
Dere\GG17817-PA | 824 | GG17817-PA | 1..824 | 1..796 | 1860 | 46.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18990-PA | 797 | GH18990-PA | 1..797 | 1..796 | 2701 | 65.4 | Plus |
Dgri\GH17674-PA | 845 | GH17674-PA | 1..845 | 1..796 | 1725 | 43.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nup93-2-PA | 796 | CG7262-PA | 1..796 | 1..796 | 4078 | 100 | Plus |
Nup93-1-PA | 823 | CG11092-PA | 1..823 | 1..796 | 1725 | 44.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24492-PA | 799 | GI24492-PA | 1..799 | 1..796 | 2671 | 64.7 | Plus |
Dmoj\GI21492-PA | 842 | GI21492-PA | 3..842 | 1..796 | 1761 | 44.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12381-PA | 798 | GL12381-PA | 1..798 | 1..796 | 2915 | 67.5 | Plus |
Dper\GL12243-PA | 635 | GL12243-PA | 1..573 | 1..573 | 2249 | 71.6 | Plus |
Dper\GL14821-PA | 828 | GL14821-PA | 1..828 | 1..796 | 1744 | 43.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20219-PA | 798 | GA20219-PA | 1..798 | 1..796 | 2925 | 67.8 | Plus |
Dpse\GA27489-PA | 798 | GA27489-PA | 1..798 | 1..796 | 2918 | 67.7 | Plus |
Dpse\GA10753-PA | 828 | GA10753-PA | 1..828 | 1..796 | 1760 | 44.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25817-PA | 794 | GM25817-PA | 1..794 | 1..796 | 4039 | 94.6 | Plus |
Dsec\GM17645-PA | 822 | GM17645-PA | 1..822 | 1..796 | 1745 | 43.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20393-PA | 796 | GD20393-PA | 1..796 | 1..796 | 4042 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24557-PA | 798 | GJ24557-PA | 1..798 | 1..796 | 2879 | 68.7 | Plus |
Dvir\GJ19033-PA | 838 | GJ19033-PA | 1..838 | 1..796 | 1830 | 45.7 | Plus |