BDGP Sequence Production Resources |
Search the DGRC for GH01133
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 11 |
Well: | 33 |
Vector: | pOT2 |
Associated Gene/Transcript | RASSF8-RA |
Protein status: | GH01133.pep: gold |
Preliminary Size: | 3750 |
Sequenced Size: | 3426 |
Gene | Date | Evidence |
---|---|---|
CG5053 | 2001-01-01 | Release 2 assignment |
CG5053 | 2001-07-04 | Blastp of sequenced clone |
CG5053 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5053 | 2008-04-29 | Release 5.5 accounting |
CG5053 | 2008-08-15 | Release 5.9 accounting |
CG5053 | 2008-12-18 | 5.12 accounting |
3426 bp (3426 high quality bases) assembled on 2001-07-04
GenBank Submission: AY047500
> GH01133.complete ATCGACTGGATGCCCATGCCAACAACAATGTTTGCTTTTAAAATTTAGAT TAAATCCGTTAAAAATCCGTGAAATCAAAACAAAAGCAGTGGAGCTGCTT CACAACAAGATTATCGTGCTTACTAGAAAGTGAAGAACCACGGAGTTACC GCGCCGGAAGTACAAAAGTAATCACCAAATCGGAAATCCGAAAAGTGAAT CAGAATTTTTCTAGCTCACACACACACGCGCGCATACCCGCACGCCCAGC AAACACTCATGCAAGCGTATGGAACCAGTCGTGTTGTTGTTGTTGCTGTG AATAAGTGCAAGTGAAGAAGAAGCAGAAACTGTGATCGGAAAATTAAGCA AAAAAGAAAAACAGGCGAGGAAAAGTGGGGTTGGGGAAAAGCAGACGGAA AAGTGGAAAGGCGGAGTGCAGCTAACACGCTTCGCTGGCTGCGCGACAGC AGAACGCCAGTCAAGCGCCAAAAACCATTAGTAGAACCCCATTTCCAGCT GGAGCGGCACAAGAAAGCAATTTTCTGGTAGCAGAAACACCAAGAAACGA AAATAATTGGCCGATCTTTAGAGACTCGACTCGACGACAATTAGCCGGAA TGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGCGGATAGTTTGCGGCGTT ACAGTGAACACCACATGTCAGGATGTGGTTTTTGCTTTGGCCCATGCCAC TGGAAAAGTGGGCAGATTCACTTTAATCGAAAGGTGGCGCAATAACGAAC GCCACCTGGCCCCCAATGAGAATCCAATGAAGCTGCTGCTCAAATGGGGC GAGTATGCAAATGATGTGCAGTTTATATTACAACGTTCGGAAAACAAAAC ACAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGAACAATAATAATA ATAACAACTATGCTGTGATGACAACAACAAAAAAGCCGCTGGGGCCGAAC AACAATAACAATAATAAGCCAGCGCCCACTTTGCTAAAGCAAAAGTCGAA CGTCGAACTCAGCTACCGCACAAAGGAATTGAAAAAAAGTTTCGGGGGCC ACGATGCCAAGCAGTTTGACAACATTGGAATCGTCAAGGGAATTCCGCAG CAGCAGCAATTGCAGTCACAACAAACGGCCATGGGAGCACCGGCGAGTCC ACCACAGGAGCAGCTGACACCGCAGGATAACAATAATGTAGCACCACTGG TGCCAAAGCATGAGAAATCGCTGTCCAATCCGCTGGACATGACCAGCACG GGTAGCAATCCACCCGCACCTACAAATGGCTACAATGACTTCTACAACAA TAACAGCAGCAGTAATCAGCATATATACAGCCAGCTGAGCAAATCCAGCA ATGAACTCCGACGCTCCAGTCCCAACGAAATGTACTACAACAATAATAAC AATATTGTTAATAACAATAACAACTCACCGGAGCTGTACAAGCAAACGCC GACGATTTCCGCGAATGGAGCTCTAGTCCCACCACCATATCGTGACCCGC CACCCCCGAGAAACAGCCCCATGTGCCAGGGGCAGCGTTTGGCCAGCAGC AATGCGGACACCATGTCCAATGCCTCCTCCTCGACGAATCCGTTTCTCAG CGACTACGATCAGCATAGCAGCCACAACACTAATAGCATCAACAATAATA GCCAGGCCATGGAGGAGGGTGAGCCCATGTTCCAGACCACGCAGTATAAC GATTTGCTGCAGCTCATCAAGTTTCAGCGGGAGAAGATCACAGCCCAGCA AATGGAATTGCAAAAGTTCGATACGGAAATAGTTTATTTGGAGAGCAAAG AACGCGACCACGCCCACGAGTTGGATGCTATTTCGCGTGAGATTTCCAAG GCGGATCAAATCTTTCGGCAAGGAAGCGAACAGCTCCAGACTCTGCAGTA TGTGGAAGAGGAAAACGAATTGGTCAAGCAGCAAGAGAAGACTTTGAAAT CAGAAATAGCTCTACTGCGATCCAAGCTGGCCAATTGCGAAACAGAGCTG CTACAATGCAAGAACAAAATGCGCTTGCTGATGGATGACATTGAGCTGGA GCAGCAACATCAACAGCAGACCAATAGGCAAACTGTGGAGCGAGACTTCT TGATGGAAATGGAGCGCATTCAGAGTGAAATCGACCAGGCTCTGCACAAC ACTGACACTTCAAACAAAACTGCAGATAGTTTAAAGAAGGAACTACTCAT GATCGAGCATGCCATCGCGGACAAGAAGCGGCAGGTGGAGCAGCTGGTCA ACGAGATGAAGGAGGTGAATTTGCAGAGCCTGACTGTGACCACCACGGAG GAGATCAAGCATCTATTGGAAGGACCCAACAAGCAGGGCAGCAGCCGGCG GATCATCGGTTCGCCCAGGCAACTTGAAACGGCGGTTCCAACCAGTAAAA ATCCTCATGGTGTGTGGGTTTAAGTCACACATACCCAGAACTATTTTTCT AAACGTATTTCTCCTCCAACAAAATAATGTTTTTGGGAACAAATTGATCA ACATATCTTGAATGCATAATGGAGTTGAAACGAAATGGATTCCTTATGAA TATCACAATTTTAAACAATATTCTAAAAATATTTACAATAATTAACGTGC TTGATTGTTGTTTTAGTATGTTTACATTCCAATCACACTCTATGGATCTC TCAATGCAATGATATATGTTACAAATTTGAAATCACAATCGTTTTATTAC TCTACATTCCGCACTGTACTTTGTATTTAATAGTAGTTAATGAGTCCCAT ATTCACATGCCCTAATCTTAATTTTGTGTGCTATACTTTTGGTTAATTTT TGCTGCTAGTCTACGTGTTAACAAAAACCCTTTCCAATCTCTACAATTCG CCATTAGTTGTTAACTTGACAATGAATTTTAATTGTTGCAATAATTCGAG AGTATCGTAATTTAAAAACGCCTTTCTAACGAATAAGTAGTGCCCTTAGT GATTTGTCTCCTACAGAATTATTCATTGTAGAATTCACAATTCGAATTAC ACAAAACTTATTGTACTTAGCAATTAGCGCAGCTTTAAAAAAACAAATTA GCAATGCTTTGTTGAAAAGTTTAACTTTTAAAGTGCTTAGCCTTAGCCAC CGGATATCGAAACAAAAGACCGAAGCATTAACAATTGCAAAGGTATCAAG CATTAGTACATACATAATTGCTAGCGTACAATTAAAAGACAACCCACAAG TCGCTTTGATGTATTATGTTTTTAATTAGCAATATTTAATATTTACACAA ACTGATGATGATAGTGAACTACAAAACACCAACGGAAATGCAATTTATCG AATATTATATATTACTATTACATTTAAACTAAAAACGATTTAGAACAAAT TGTAATTGCATTACATCTAATTAGCTAATAAATACATTTTTATGATTTTC TCGAAACGAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5053-RA | 3554 | CG5053-RA | 143..3552 | 1..3410 | 17050 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 21487335..21488667 | 2076..3408 | 6665 | 100 | Plus |
chr3R | 27901430 | chr3R | 21486171..21486897 | 1040..1766 | 3620 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 21484833..21485514 | 1..672 | 3150 | 97.8 | Plus |
chr3R | 27901430 | chr3R | 21485658..21486035 | 669..1046 | 1890 | 100 | Plus |
chr3R | 27901430 | chr3R | 21486963..21487276 | 1765..2078 | 1570 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 25664308..25665642 | 2076..3410 | 6675 | 100 | Plus |
3R | 32079331 | 3R | 25663144..25663870 | 1040..1766 | 3620 | 99.9 | Plus |
3R | 32079331 | 3R | 25661816..25662487 | 1..672 | 3360 | 100 | Plus |
3R | 32079331 | 3R | 25662631..25663008 | 669..1046 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 25663936..25664249 | 1765..2078 | 1570 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 25405139..25406473 | 2076..3410 | 6675 | 100 | Plus |
3R | 31820162 | 3R | 25403975..25404701 | 1040..1766 | 3620 | 99.8 | Plus |
3R | 31820162 | 3R | 25402647..25403318 | 1..672 | 3360 | 100 | Plus |
3R | 31820162 | 3R | 25403462..25403839 | 669..1046 | 1890 | 100 | Plus |
3R | 31820162 | 3R | 25404767..25405080 | 1765..2078 | 1570 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2949 | 852..1434 | 229 | 55.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6986 | 1237..1485 | 167 | 56.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2569..2667 | 816..911 | 162 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2535 | 1237..1434 | 152 | 56.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6651..6893 | 1178..1424 | 142 | 56.9 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7052..7097 | 1379..1423 | 128 | 78.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 14..59 | 1379..1423 | 128 | 78.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6892 | 1292..1445 | 127 | 60.5 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 32..68 | 1387..1423 | 122 | 81.1 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7070..7106 | 1387..1423 | 122 | 81.1 | Plus |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 2998..3089 | 1947..2035 | 120 | 62.4 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 7803..7867 | 1293..1354 | 119 | 69.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 21484833..21485513 | 1..671 | 97 | -> | Plus |
chr3R | 21485661..21486034 | 672..1045 | 90 | -> | Plus |
chr3R | 21486177..21486897 | 1046..1766 | 100 | -> | Plus |
chr3R | 21486965..21487275 | 1767..2077 | 100 | -> | Plus |
chr3R | 21487337..21488667 | 2078..3408 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5053-RA | 1..1824 | 600..2423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RASSF8-RA | 1..1824 | 600..2423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RASSF8-RA | 1..1824 | 600..2423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5053-RA | 1..1824 | 600..2423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RASSF8-RA | 1..1824 | 600..2423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5053-RA | 17..3424 | 1..3408 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RASSF8-RA | 17..3424 | 1..3408 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RASSF8-RA | 22..3429 | 1..3408 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5053-RA | 17..3424 | 1..3408 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RASSF8-RA | 22..3429 | 1..3408 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25661816..25662486 | 1..671 | 100 | -> | Plus |
3R | 25662634..25663007 | 672..1045 | 100 | -> | Plus |
3R | 25663150..25663870 | 1046..1766 | 100 | -> | Plus |
3R | 25663938..25664248 | 1767..2077 | 100 | -> | Plus |
3R | 25664310..25665640 | 2078..3408 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25661816..25662486 | 1..671 | 100 | -> | Plus |
3R | 25662634..25663007 | 672..1045 | 100 | -> | Plus |
3R | 25663150..25663870 | 1046..1766 | 100 | -> | Plus |
3R | 25663938..25664248 | 1767..2077 | 100 | -> | Plus |
3R | 25664310..25665640 | 2078..3408 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25661816..25662486 | 1..671 | 100 | -> | Plus |
3R | 25662634..25663007 | 672..1045 | 100 | -> | Plus |
3R | 25663150..25663870 | 1046..1766 | 100 | -> | Plus |
3R | 25663938..25664248 | 1767..2077 | 100 | -> | Plus |
3R | 25664310..25665640 | 2078..3408 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 21488356..21488729 | 672..1045 | 100 | -> | Plus |
arm_3R | 21487538..21488208 | 1..671 | 100 | -> | Plus |
arm_3R | 21488872..21489592 | 1046..1766 | 100 | -> | Plus |
arm_3R | 21489660..21489970 | 1767..2077 | 100 | -> | Plus |
arm_3R | 21490032..21491362 | 2078..3408 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25402647..25403317 | 1..671 | 100 | -> | Plus |
3R | 25403465..25403838 | 672..1045 | 100 | -> | Plus |
3R | 25403981..25404701 | 1046..1766 | 100 | -> | Plus |
3R | 25404769..25405079 | 1767..2077 | 100 | -> | Plus |
3R | 25405141..25406471 | 2078..3408 | 100 | Plus |
Translation from 599 to 2422
> GH01133.pep MELKVWVEGIQRIVCGVTVNTTCQDVVFALAHATGKVGRFTLIERWRNNE RHLAPNENPMKLLLKWGEYANDVQFILQRSENKTQQQQQQQQQQQQNNNN NNNYAVMTTTKKPLGPNNNNNNKPAPTLLKQKSNVELSYRTKELKKSFGG HDAKQFDNIGIVKGIPQQQQLQSQQTAMGAPASPPQEQLTPQDNNNVAPL VPKHEKSLSNPLDMTSTGSNPPAPTNGYNDFYNNNSSSNQHIYSQLSKSS NELRRSSPNEMYYNNNNNIVNNNNNSPELYKQTPTISANGALVPPPYRDP PPPRNSPMCQGQRLASSNADTMSNASSSTNPFLSDYDQHSSHNTNSINNN SQAMEEGEPMFQTTQYNDLLQLIKFQREKITAQQMELQKFDTEIVYLESK ERDHAHELDAISREISKADQIFRQGSEQLQTLQYVEEENELVKQQEKTLK SEIALLRSKLANCETELLQCKNKMRLLMDDIELEQQHQQQTNRQTVERDF LMEMERIQSEIDQALHNTDTSNKTADSLKKELLMIEHAIADKKRQVEQLV NEMKEVNLQSLTVTTTEEIKHLLEGPNKQGSSRRIIGSPRQLETAVPTSK NPHGVWV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16765-PA | 606 | GF16765-PA | 1..606 | 1..607 | 2472 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11418-PA | 610 | GG11418-PA | 1..610 | 1..607 | 3116 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18985-PA | 627 | GH18985-PA | 1..627 | 1..607 | 2261 | 80.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RASSF8-PA | 607 | CG5053-PA | 1..607 | 1..607 | 3156 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22412-PA | 641 | GI22412-PA | 1..641 | 1..607 | 2212 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21526-PA | 607 | GL21526-PA | 1..607 | 1..607 | 2311 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18623-PA | 615 | GA18623-PA | 1..615 | 1..607 | 2319 | 84.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10258-PA | 607 | GM10258-PA | 1..607 | 1..607 | 3203 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21229-PA | 563 | GD21229-PA | 1..563 | 1..607 | 2588 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10971-PA | 641 | GJ10971-PA | 1..641 | 1..607 | 2202 | 77.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12853-PA | 689 | GK12853-PA | 1..689 | 1..607 | 2218 | 75.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23613-PA | 615 | GE23613-PA | 1..615 | 1..607 | 3118 | 96.1 | Plus |
Translation from 599 to 2422
> GH01133.hyp MELKVWVEGIQRIVCGVTVNTTCQDVVFALAHATGKVGRFTLIERWRNNE RHLAPNENPMKLLLKWGEYANDVQFILQRSENKTQQQQQQQQQQQQNNNN NNNYAVMTTTKKPLGPNNNNNNKPAPTLLKQKSNVELSYRTKELKKSFGG HDAKQFDNIGIVKGIPQQQQLQSQQTAMGAPASPPQEQLTPQDNNNVAPL VPKHEKSLSNPLDMTSTGSNPPAPTNGYNDFYNNNSSSNQHIYSQLSKSS NELRRSSPNEMYYNNNNNIVNNNNNSPELYKQTPTISANGALVPPPYRDP PPPRNSPMCQGQRLASSNADTMSNASSSTNPFLSDYDQHSSHNTNSINNN SQAMEEGEPMFQTTQYNDLLQLIKFQREKITAQQMELQKFDTEIVYLESK ERDHAHELDAISREISKADQIFRQGSEQLQTLQYVEEENELVKQQEKTLK SEIALLRSKLANCETELLQCKNKMRLLMDDIELEQQHQQQTNRQTVERDF LMEMERIQSEIDQALHNTDTSNKTADSLKKELLMIEHAIADKKRQVEQLV NEMKEVNLQSLTVTTTEEIKHLLEGPNKQGSSRRIIGSPRQLETAVPTSK NPHGVWV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RASSF8-PA | 607 | CG5053-PA | 1..607 | 1..607 | 3156 | 100 | Plus |