Clone GH01133 Report

Search the DGRC for GH01133

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:11
Well:33
Vector:pOT2
Associated Gene/TranscriptRASSF8-RA
Protein status:GH01133.pep: gold
Preliminary Size:3750
Sequenced Size:3426

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5053 2001-01-01 Release 2 assignment
CG5053 2001-07-04 Blastp of sequenced clone
CG5053 2003-01-01 Sim4 clustering to Release 3
CG5053 2008-04-29 Release 5.5 accounting
CG5053 2008-08-15 Release 5.9 accounting
CG5053 2008-12-18 5.12 accounting

Clone Sequence Records

GH01133.complete Sequence

3426 bp (3426 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047500

> GH01133.complete
ATCGACTGGATGCCCATGCCAACAACAATGTTTGCTTTTAAAATTTAGAT
TAAATCCGTTAAAAATCCGTGAAATCAAAACAAAAGCAGTGGAGCTGCTT
CACAACAAGATTATCGTGCTTACTAGAAAGTGAAGAACCACGGAGTTACC
GCGCCGGAAGTACAAAAGTAATCACCAAATCGGAAATCCGAAAAGTGAAT
CAGAATTTTTCTAGCTCACACACACACGCGCGCATACCCGCACGCCCAGC
AAACACTCATGCAAGCGTATGGAACCAGTCGTGTTGTTGTTGTTGCTGTG
AATAAGTGCAAGTGAAGAAGAAGCAGAAACTGTGATCGGAAAATTAAGCA
AAAAAGAAAAACAGGCGAGGAAAAGTGGGGTTGGGGAAAAGCAGACGGAA
AAGTGGAAAGGCGGAGTGCAGCTAACACGCTTCGCTGGCTGCGCGACAGC
AGAACGCCAGTCAAGCGCCAAAAACCATTAGTAGAACCCCATTTCCAGCT
GGAGCGGCACAAGAAAGCAATTTTCTGGTAGCAGAAACACCAAGAAACGA
AAATAATTGGCCGATCTTTAGAGACTCGACTCGACGACAATTAGCCGGAA
TGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGCGGATAGTTTGCGGCGTT
ACAGTGAACACCACATGTCAGGATGTGGTTTTTGCTTTGGCCCATGCCAC
TGGAAAAGTGGGCAGATTCACTTTAATCGAAAGGTGGCGCAATAACGAAC
GCCACCTGGCCCCCAATGAGAATCCAATGAAGCTGCTGCTCAAATGGGGC
GAGTATGCAAATGATGTGCAGTTTATATTACAACGTTCGGAAAACAAAAC
ACAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGAACAATAATAATA
ATAACAACTATGCTGTGATGACAACAACAAAAAAGCCGCTGGGGCCGAAC
AACAATAACAATAATAAGCCAGCGCCCACTTTGCTAAAGCAAAAGTCGAA
CGTCGAACTCAGCTACCGCACAAAGGAATTGAAAAAAAGTTTCGGGGGCC
ACGATGCCAAGCAGTTTGACAACATTGGAATCGTCAAGGGAATTCCGCAG
CAGCAGCAATTGCAGTCACAACAAACGGCCATGGGAGCACCGGCGAGTCC
ACCACAGGAGCAGCTGACACCGCAGGATAACAATAATGTAGCACCACTGG
TGCCAAAGCATGAGAAATCGCTGTCCAATCCGCTGGACATGACCAGCACG
GGTAGCAATCCACCCGCACCTACAAATGGCTACAATGACTTCTACAACAA
TAACAGCAGCAGTAATCAGCATATATACAGCCAGCTGAGCAAATCCAGCA
ATGAACTCCGACGCTCCAGTCCCAACGAAATGTACTACAACAATAATAAC
AATATTGTTAATAACAATAACAACTCACCGGAGCTGTACAAGCAAACGCC
GACGATTTCCGCGAATGGAGCTCTAGTCCCACCACCATATCGTGACCCGC
CACCCCCGAGAAACAGCCCCATGTGCCAGGGGCAGCGTTTGGCCAGCAGC
AATGCGGACACCATGTCCAATGCCTCCTCCTCGACGAATCCGTTTCTCAG
CGACTACGATCAGCATAGCAGCCACAACACTAATAGCATCAACAATAATA
GCCAGGCCATGGAGGAGGGTGAGCCCATGTTCCAGACCACGCAGTATAAC
GATTTGCTGCAGCTCATCAAGTTTCAGCGGGAGAAGATCACAGCCCAGCA
AATGGAATTGCAAAAGTTCGATACGGAAATAGTTTATTTGGAGAGCAAAG
AACGCGACCACGCCCACGAGTTGGATGCTATTTCGCGTGAGATTTCCAAG
GCGGATCAAATCTTTCGGCAAGGAAGCGAACAGCTCCAGACTCTGCAGTA
TGTGGAAGAGGAAAACGAATTGGTCAAGCAGCAAGAGAAGACTTTGAAAT
CAGAAATAGCTCTACTGCGATCCAAGCTGGCCAATTGCGAAACAGAGCTG
CTACAATGCAAGAACAAAATGCGCTTGCTGATGGATGACATTGAGCTGGA
GCAGCAACATCAACAGCAGACCAATAGGCAAACTGTGGAGCGAGACTTCT
TGATGGAAATGGAGCGCATTCAGAGTGAAATCGACCAGGCTCTGCACAAC
ACTGACACTTCAAACAAAACTGCAGATAGTTTAAAGAAGGAACTACTCAT
GATCGAGCATGCCATCGCGGACAAGAAGCGGCAGGTGGAGCAGCTGGTCA
ACGAGATGAAGGAGGTGAATTTGCAGAGCCTGACTGTGACCACCACGGAG
GAGATCAAGCATCTATTGGAAGGACCCAACAAGCAGGGCAGCAGCCGGCG
GATCATCGGTTCGCCCAGGCAACTTGAAACGGCGGTTCCAACCAGTAAAA
ATCCTCATGGTGTGTGGGTTTAAGTCACACATACCCAGAACTATTTTTCT
AAACGTATTTCTCCTCCAACAAAATAATGTTTTTGGGAACAAATTGATCA
ACATATCTTGAATGCATAATGGAGTTGAAACGAAATGGATTCCTTATGAA
TATCACAATTTTAAACAATATTCTAAAAATATTTACAATAATTAACGTGC
TTGATTGTTGTTTTAGTATGTTTACATTCCAATCACACTCTATGGATCTC
TCAATGCAATGATATATGTTACAAATTTGAAATCACAATCGTTTTATTAC
TCTACATTCCGCACTGTACTTTGTATTTAATAGTAGTTAATGAGTCCCAT
ATTCACATGCCCTAATCTTAATTTTGTGTGCTATACTTTTGGTTAATTTT
TGCTGCTAGTCTACGTGTTAACAAAAACCCTTTCCAATCTCTACAATTCG
CCATTAGTTGTTAACTTGACAATGAATTTTAATTGTTGCAATAATTCGAG
AGTATCGTAATTTAAAAACGCCTTTCTAACGAATAAGTAGTGCCCTTAGT
GATTTGTCTCCTACAGAATTATTCATTGTAGAATTCACAATTCGAATTAC
ACAAAACTTATTGTACTTAGCAATTAGCGCAGCTTTAAAAAAACAAATTA
GCAATGCTTTGTTGAAAAGTTTAACTTTTAAAGTGCTTAGCCTTAGCCAC
CGGATATCGAAACAAAAGACCGAAGCATTAACAATTGCAAAGGTATCAAG
CATTAGTACATACATAATTGCTAGCGTACAATTAAAAGACAACCCACAAG
TCGCTTTGATGTATTATGTTTTTAATTAGCAATATTTAATATTTACACAA
ACTGATGATGATAGTGAACTACAAAACACCAACGGAAATGCAATTTATCG
AATATTATATATTACTATTACATTTAAACTAAAAACGATTTAGAACAAAT
TGTAATTGCATTACATCTAATTAGCTAATAAATACATTTTTATGATTTTC
TCGAAACGAAAAAAAAAAAAAAAAAA

GH01133.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5053-RA 3554 CG5053-RA 143..3552 1..3410 17050 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21487335..21488667 2076..3408 6665 100 Plus
chr3R 27901430 chr3R 21486171..21486897 1040..1766 3620 99.9 Plus
chr3R 27901430 chr3R 21484833..21485514 1..672 3150 97.8 Plus
chr3R 27901430 chr3R 21485658..21486035 669..1046 1890 100 Plus
chr3R 27901430 chr3R 21486963..21487276 1765..2078 1570 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:25:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25664308..25665642 2076..3410 6675 100 Plus
3R 32079331 3R 25663144..25663870 1040..1766 3620 99.9 Plus
3R 32079331 3R 25661816..25662487 1..672 3360 100 Plus
3R 32079331 3R 25662631..25663008 669..1046 1890 100 Plus
3R 32079331 3R 25663936..25664249 1765..2078 1570 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25405139..25406473 2076..3410 6675 100 Plus
3R 31820162 3R 25403975..25404701 1040..1766 3620 99.8 Plus
3R 31820162 3R 25402647..25403318 1..672 3360 100 Plus
3R 31820162 3R 25403462..25403839 669..1046 1890 100 Plus
3R 31820162 3R 25404767..25405080 1765..2078 1570 100 Plus
Blast to na_te.dros performed 2019-03-15 17:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2949 852..1434 229 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6986 1237..1485 167 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2569..2667 816..911 162 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2535 1237..1434 152 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6651..6893 1178..1424 142 56.9 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7052..7097 1379..1423 128 78.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 14..59 1379..1423 128 78.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6892 1292..1445 127 60.5 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 32..68 1387..1423 122 81.1 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7070..7106 1387..1423 122 81.1 Plus
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 2998..3089 1947..2035 120 62.4 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 7803..7867 1293..1354 119 69.2 Plus

GH01133.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:58:44 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21484833..21485513 1..671 97 -> Plus
chr3R 21485661..21486034 672..1045 90 -> Plus
chr3R 21486177..21486897 1046..1766 100 -> Plus
chr3R 21486965..21487275 1767..2077 100 -> Plus
chr3R 21487337..21488667 2078..3408 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:02:22 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
CG5053-RA 1..1824 600..2423 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:26 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 1..1824 600..2423 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:51:09 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 1..1824 600..2423 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:56 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
CG5053-RA 1..1824 600..2423 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:51:12 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 1..1824 600..2423 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:31:16 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
CG5053-RA 17..3424 1..3408 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:26 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 17..3424 1..3408 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:51:09 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 22..3429 1..3408 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:56 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
CG5053-RA 17..3424 1..3408 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:51:12 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 22..3429 1..3408 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:44 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25661816..25662486 1..671 100 -> Plus
3R 25662634..25663007 672..1045 100 -> Plus
3R 25663150..25663870 1046..1766 100 -> Plus
3R 25663938..25664248 1767..2077 100 -> Plus
3R 25664310..25665640 2078..3408 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:44 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25661816..25662486 1..671 100 -> Plus
3R 25662634..25663007 672..1045 100 -> Plus
3R 25663150..25663870 1046..1766 100 -> Plus
3R 25663938..25664248 1767..2077 100 -> Plus
3R 25664310..25665640 2078..3408 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:44 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25661816..25662486 1..671 100 -> Plus
3R 25662634..25663007 672..1045 100 -> Plus
3R 25663150..25663870 1046..1766 100 -> Plus
3R 25663938..25664248 1767..2077 100 -> Plus
3R 25664310..25665640 2078..3408 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:51:09 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21488356..21488729 672..1045 100 -> Plus
arm_3R 21487538..21488208 1..671 100 -> Plus
arm_3R 21488872..21489592 1046..1766 100 -> Plus
arm_3R 21489660..21489970 1767..2077 100 -> Plus
arm_3R 21490032..21491362 2078..3408 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:42:03 Download gff for GH01133.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25402647..25403317 1..671 100 -> Plus
3R 25403465..25403838 672..1045 100 -> Plus
3R 25403981..25404701 1046..1766 100 -> Plus
3R 25404769..25405079 1767..2077 100 -> Plus
3R 25405141..25406471 2078..3408 100   Plus

GH01133.pep Sequence

Translation from 599 to 2422

> GH01133.pep
MELKVWVEGIQRIVCGVTVNTTCQDVVFALAHATGKVGRFTLIERWRNNE
RHLAPNENPMKLLLKWGEYANDVQFILQRSENKTQQQQQQQQQQQQNNNN
NNNYAVMTTTKKPLGPNNNNNNKPAPTLLKQKSNVELSYRTKELKKSFGG
HDAKQFDNIGIVKGIPQQQQLQSQQTAMGAPASPPQEQLTPQDNNNVAPL
VPKHEKSLSNPLDMTSTGSNPPAPTNGYNDFYNNNSSSNQHIYSQLSKSS
NELRRSSPNEMYYNNNNNIVNNNNNSPELYKQTPTISANGALVPPPYRDP
PPPRNSPMCQGQRLASSNADTMSNASSSTNPFLSDYDQHSSHNTNSINNN
SQAMEEGEPMFQTTQYNDLLQLIKFQREKITAQQMELQKFDTEIVYLESK
ERDHAHELDAISREISKADQIFRQGSEQLQTLQYVEEENELVKQQEKTLK
SEIALLRSKLANCETELLQCKNKMRLLMDDIELEQQHQQQTNRQTVERDF
LMEMERIQSEIDQALHNTDTSNKTADSLKKELLMIEHAIADKKRQVEQLV
NEMKEVNLQSLTVTTTEEIKHLLEGPNKQGSSRRIIGSPRQLETAVPTSK
NPHGVWV*

GH01133.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16765-PA 606 GF16765-PA 1..606 1..607 2472 86.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11418-PA 610 GG11418-PA 1..610 1..607 3116 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18985-PA 627 GH18985-PA 1..627 1..607 2261 80.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-PA 607 CG5053-PA 1..607 1..607 3156 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22412-PA 641 GI22412-PA 1..641 1..607 2212 77.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21526-PA 607 GL21526-PA 1..607 1..607 2311 85 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18623-PA 615 GA18623-PA 1..615 1..607 2319 84.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10258-PA 607 GM10258-PA 1..607 1..607 3203 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21229-PA 563 GD21229-PA 1..563 1..607 2588 90 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10971-PA 641 GJ10971-PA 1..641 1..607 2202 77.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12853-PA 689 GK12853-PA 1..689 1..607 2218 75.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23613-PA 615 GE23613-PA 1..615 1..607 3118 96.1 Plus

GH01133.hyp Sequence

Translation from 599 to 2422

> GH01133.hyp
MELKVWVEGIQRIVCGVTVNTTCQDVVFALAHATGKVGRFTLIERWRNNE
RHLAPNENPMKLLLKWGEYANDVQFILQRSENKTQQQQQQQQQQQQNNNN
NNNYAVMTTTKKPLGPNNNNNNKPAPTLLKQKSNVELSYRTKELKKSFGG
HDAKQFDNIGIVKGIPQQQQLQSQQTAMGAPASPPQEQLTPQDNNNVAPL
VPKHEKSLSNPLDMTSTGSNPPAPTNGYNDFYNNNSSSNQHIYSQLSKSS
NELRRSSPNEMYYNNNNNIVNNNNNSPELYKQTPTISANGALVPPPYRDP
PPPRNSPMCQGQRLASSNADTMSNASSSTNPFLSDYDQHSSHNTNSINNN
SQAMEEGEPMFQTTQYNDLLQLIKFQREKITAQQMELQKFDTEIVYLESK
ERDHAHELDAISREISKADQIFRQGSEQLQTLQYVEEENELVKQQEKTLK
SEIALLRSKLANCETELLQCKNKMRLLMDDIELEQQHQQQTNRQTVERDF
LMEMERIQSEIDQALHNTDTSNKTADSLKKELLMIEHAIADKKRQVEQLV
NEMKEVNLQSLTVTTTEEIKHLLEGPNKQGSSRRIIGSPRQLETAVPTSK
NPHGVWV*

GH01133.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-PA 607 CG5053-PA 1..607 1..607 3156 100 Plus