Clone GH01148 Report

Search the DGRC for GH01148

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:11
Well:48
Vector:pOT2
Associated Gene/Transcriptcdc14-RB
Protein status:GH01148.pep: gold
Sequenced Size:3014

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7134 2003-01-01 Sim4 clustering to Release 3
CG7134 2004-10-22 Blastp of sequenced clone
cdc14 2008-04-29 Release 5.5 accounting
cdc14 2008-08-15 Release 5.9 accounting
cdc14 2008-12-18 5.12 accounting

Clone Sequence Records

GH01148.complete Sequence

3014 bp (3014 high quality bases) assembled on 2004-10-22

GenBank Submission: BT016136

> GH01148.complete
TAATATTCGGTGACAAAATTTTTCCAAAAAAAAAAATACTTTTAAAATAT
AAAATCCCATTCGGGAGTAAAGTTTGTCAAAATTGTACAGTGTTATGCGG
AGCGTGGTGTGGGTGTTATTAGCTGGTGCTGCTGTTGCTGACTCTCCTCT
GCCTTCCCAAATTCGACGTCTTCCCTTCTTCAGGAATATTCATTCGTGAA
TATCCATAGCAGCAGAAGTAACAACAACACAGCAGTGTGAACCCACAATT
TAGTCGCCAAACAGTCGTCGAAGTCTCCCGTGCTCCTGATAGTCGGCCAA
GATGTTGGACGATGACAACTCAGATCTGCTGGTCTGTGCATCGGAGATGC
AGGAAGACCGATTATACTTTGTGGCCTTCAAGAAGAACATCAAGCCAAAG
AACACGGTCAACACCCACTACTTCAGCGTCGATGAGGAATTCATCTATGA
GAACTTCTACAATGACTTTGGTCCGCTCAACATATGCATGCTCTACAGAT
ACTGCATGAAACTGAACACCAAGCTGAATGCCAAGTGCCATGCCAACAAA
AAGATAGTTCACTACACCTCCATGAATCCGGCCAAGCGGTTGAACGCGGC
CTATCTGATTGGTTCGTATGCAATAATCTACCTTAACAAGACACCACAAG
AGGCATATCGGCCGCTGGTCGCTGGCGAGATTCCTGCCTACACGCGCTTT
TGTGACGCCAGCTACGGACCTAGCAACTTTAAGATTTCGTTGCTGGACTG
CCTGAATGCTGTGCACAAAGGCCTGCAGGCGGGATTCTTTAATTTCAACG
ACTTTGATGCTGAGGAGTATGAGTATTTCGAGCGCGTGGAGAACGGCGAC
TTTAACTGGATTGTGCCCCAAAAGTTTATAGCGTTTTGCGGGCCCCATCA
GAAGAGCAAGACGCTGCCGAATGGATATCCGTGCCATGCACCTGAGCGCT
ACTTTAGCTATTTTCGGGATAATAATGTGACAACAGTGATTCGGCTGAAT
GCCAAAGTCTATCACGCATCGTCCTTTGAGAACGCTGGTTTCGATCACAA
GGATTTGTTCTTCATCGATGGCAGCACGCCCAGCGATGCCATCATGAAGA
AGTTCCTCTCCATTTGTGAGACGACAAAGGGAGCCATTGCAGTTCACTGC
AAAGCGGGCTTGGGACGCACGGGCAGCCTGATAGGGGCATATATCATGAA
GCATTACGGATTCACTGCTCTGGAGGCCATAGCCTGGCTAAGGCTTTGCC
GGCCGGGATCGGTGATTGGACATCAGCAGCAGTGGATGGAAGACAAACAA
AGCTGGCTGTGGTCGGAGGGCGAACGAATGCGCCGGCGCACTTCGCTTCC
CATCCTCCAGCATACGTACGGTATCAACAGCCTGGAGCTGAAGAAAAAAC
TGGCCTCGGCTGCCGCCGATTCCACAGAGCACGTCGATCTGCTTTTAACC
CGAGTGAAGGGCATTTCTCAGCGGGTAGATACGATGCACCTGAATGACCA
GGATAACTTAGATGCAGCTTGTACGGATCAAACGGATGAGGAACTCTCGG
AGCAGCTGCGATTGGAGCGGGACGAGAGAGCGCTCTATCAATCCGTTGAG
GATCCCAATTGCAATAATAGCGATGACAACGATACGGACACGATCAGTGC
ACCAGCGGATCCGCCGCCTACCTCCAGCTATACAATATCCACACGGCGTA
GGAAATCTCCATCAGGCGCGAACAAACCGACAGTAATAGCCACATCCCTG
AGGCGCCTGGTTAATCCCAATGCCAATCGCAGTGGATTGAGTACGGCATC
TGGAGTTTATCCCACTCCTGAGTTGGCCAGCTGCACGGAGAAGAAGTTGC
GCAAGCCAAGTGCAAATGTCTTCGAGGCAGCCCGACACACGATTGCGTCC
ACCGTCAGGATGACACAAACGGCGCTCGAAAAGAAGCAGGCCCAGACGCA
GGGCGACAAGCTGAATCAGATCAAGGCGCTGCGAAGGCATCACTCGCGAT
CCGTTAATGTGAACAGCAATAGCGAACAGGAATCGAACGTGAGGCATACG
AGAGCTCGATCCCAACCGTTCCGGAACAATAACAATGGAGTGGGTGGAAA
TACAGCGATGGCTGCCTTGAAGCCCACTTCCTCCTGCTTGCCAACTGGCA
CAGGGACAGCCGCTCTTTTGGCCAACAATCTGAACAACAATAATGACTGC
GGTATTGGGACTAGCGGCAGTAGCAATAATAACCACAACAACAACAACAA
CAACAGTAATCTAAGCAACTCCCTGAATAACTATAACAACAACAACAATA
CAACTAACAATATTTTGGCCAGTTCGGGGAGCAGTCGCACCCGCAGCCTG
GCGCTCTATAGCAAAAGACACAAGCCGGCTTAGTGGGCGCGGCAGTGCCG
AATTGCAGGCGATCATCGAGCACGGCCTGGTGGCTGGTTCCGCCAAGCGA
AACAAGCGATCGCTGAGCTCCACACGCCTGGACAAGGACAAGAGCGACGA
GTACAACACAAAGCTGTTGAGGAAGACGGCGGCGGCAGCTGCTGCAGCGG
CCACAGCAGCATCAGCTGTAGCCAACAGCACATCGATCAACGCCACCCAC
GCCACAAACGCCTCCACCACCAGCAGCATGAACAACAATTGCAAGTACAA
CAGCTGCAGCAGCAGCAACAGCGGCAGCTTCAAGCTTTCCCGGCGCCTTT
TCGGTGAGTCCGGCTCCTCAGCATCGACGTCCGCCTCAAATTCGGGTATT
CCCACACCCACGGCGCCGCCCTCCTCCAGCCAGTGGCAACAGCACCTGGT
ACGCGGTGTGAGTCGTGCGTCCAGCGAAAAGGATCGGGATCGGGAGCGAC
AGCAACAACAACAACAACAGTCTCTGGACCATCAACAATCCAATCTCAAG
CTGCGCAAGAAGATTAGCTATTGAACACTAATCATATATTGTTTCCTTTA
GTTGTGTAAATATTATTTTGACTAGTAAATTGAACGTTTCCCGATGAAAA
AAAAAAAAAAAAAA

GH01148.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
cdc14-RB 3705 cdc14-RB 330..3326 1..2997 14985 100 Plus
cdc14.a 4121 cdc14.a 330..2697 1..2368 11840 100 Plus
cdc14-RC 3979 cdc14-RC 284..2650 1..2367 11835 100 Plus
cdc14.a 4121 cdc14.a 3228..3859 2366..2997 3160 100 Plus
cdc14-RC 3979 cdc14-RC 3349..3979 2366..2996 3155 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7804138..7804866 2022..1294 3645 100 Minus
chr2L 23010047 chr2L 7804931..7805601 1293..623 3355 100 Minus
chr2L 23010047 chr2L 7801493..7802123 2996..2366 3155 100 Minus
chr2L 23010047 chr2L 7803649..7803995 2367..2021 1735 100 Minus
chr2L 23010047 chr2L 7805731..7806002 626..355 1345 99.6 Minus
chr2L 23010047 chr2L 7809240..7809492 253..1 1265 100 Minus
chr2L 23010047 chr2L 7806068..7806172 356..252 525 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:25:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7805060..7805788 2022..1294 3645 100 Minus
2L 23513712 2L 7805853..7806523 1293..623 3355 100 Minus
2L 23513712 2L 7802414..7803045 2997..2366 3160 100 Minus
2L 23513712 2L 7804571..7804917 2367..2021 1735 100 Minus
2L 23513712 2L 7806653..7806924 626..355 1345 99.6 Minus
2L 23513712 2L 7810162..7810414 253..1 1265 100 Minus
2L 23513712 2L 7806990..7807094 356..252 525 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7805060..7805788 2022..1294 3645 100 Minus
2L 23513712 2L 7805853..7806523 1293..623 3355 100 Minus
2L 23513712 2L 7802414..7803045 2997..2366 3160 100 Minus
2L 23513712 2L 7804571..7804917 2367..2021 1735 100 Minus
2L 23513712 2L 7806653..7806924 626..355 1345 99.6 Minus
2L 23513712 2L 7810162..7810414 253..1 1265 100 Minus
2L 23513712 2L 7806990..7807094 356..252 525 100 Minus
Blast to na_te.dros performed 2019-03-16 10:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2482 2533..2682 250 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6806..7021 2489..2699 193 58.3 Plus

GH01148.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:19:45 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7801963..7802121 2368..2526 100 <- Minus
chr2L 7803649..7803993 2023..2367 90 <- Minus
chr2L 7804138..7804866 1294..2022 100 <- Minus
chr2L 7804931..7805601 623..1293 100 <- Minus
chr2L 7805735..7806000 357..622 100 <- Minus
chr2L 7806068..7806170 254..356 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:02:30 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
cdc14-RA 1..2070 302..2369 99 <- Plus
cdc14-RA 2605..3159 2370..2924 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:30:08 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
cdc14-RB 1..2082 302..2383 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:00:04 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
cdc14-RB 1..2082 302..2383 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:01 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
cdc14-RA 1..2070 302..2369 99 <- Plus
cdc14-RA 2605..3159 2370..2924 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:04 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
cdc14-RB 1..2082 302..2383 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:34:25 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
cdc14-RA 284..2654 1..2369 99 <- Plus
cdc14-RA 3189..3743 2370..2924 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:30:07 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
cdc14-RB 284..3279 1..2996 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:04 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
cdc14-RB 290..3285 1..2996 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:02 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
cdc14-RA 284..2654 1..2369 99 <- Plus
cdc14-RA 3189..3743 2370..2924 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:04 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
cdc14-RB 290..3285 1..2996 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:45 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7802415..7803043 2368..2996 100 <- Minus
2L 7804571..7804915 2023..2367 100 <- Minus
2L 7805060..7805788 1294..2022 100 <- Minus
2L 7805853..7806523 623..1293 100 <- Minus
2L 7806657..7806922 357..622 100 <- Minus
2L 7806990..7807092 254..356 100 <- Minus
2L 7810162..7810414 1..253 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:45 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7802415..7803043 2368..2996 100 <- Minus
2L 7804571..7804915 2023..2367 100 <- Minus
2L 7805060..7805788 1294..2022 100 <- Minus
2L 7805853..7806523 623..1293 100 <- Minus
2L 7806657..7806922 357..622 100 <- Minus
2L 7806990..7807092 254..356 100 <- Minus
2L 7810162..7810414 1..253 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:45 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7802415..7803043 2368..2996 100 <- Minus
2L 7804571..7804915 2023..2367 100 <- Minus
2L 7805060..7805788 1294..2022 100 <- Minus
2L 7805853..7806523 623..1293 100 <- Minus
2L 7806657..7806922 357..622 100 <- Minus
2L 7806990..7807092 254..356 100 <- Minus
2L 7810162..7810414 1..253 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:04 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7810162..7810414 1..253 100   Minus
arm_2L 7802415..7803043 2368..2996 100 <- Minus
arm_2L 7804571..7804915 2023..2367 100 <- Minus
arm_2L 7805060..7805788 1294..2022 100 <- Minus
arm_2L 7805853..7806523 623..1293 100 <- Minus
arm_2L 7806657..7806922 357..622 100 <- Minus
arm_2L 7806990..7807092 254..356 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:50:47 Download gff for GH01148.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7802415..7803043 2368..2996 100 <- Minus
2L 7804571..7804915 2023..2367 100 <- Minus
2L 7805060..7805788 1294..2022 100 <- Minus
2L 7805853..7806523 623..1293 100 <- Minus
2L 7806657..7806922 357..622 100 <- Minus
2L 7806990..7807092 254..356 100 <- Minus
2L 7810162..7810414 1..253 100   Minus

GH01148.pep Sequence

Translation from 301 to 2382

> GH01148.pep
MLDDDNSDLLVCASEMQEDRLYFVAFKKNIKPKNTVNTHYFSVDEEFIYE
NFYNDFGPLNICMLYRYCMKLNTKLNAKCHANKKIVHYTSMNPAKRLNAA
YLIGSYAIIYLNKTPQEAYRPLVAGEIPAYTRFCDASYGPSNFKISLLDC
LNAVHKGLQAGFFNFNDFDAEEYEYFERVENGDFNWIVPQKFIAFCGPHQ
KSKTLPNGYPCHAPERYFSYFRDNNVTTVIRLNAKVYHASSFENAGFDHK
DLFFIDGSTPSDAIMKKFLSICETTKGAIAVHCKAGLGRTGSLIGAYIMK
HYGFTALEAIAWLRLCRPGSVIGHQQQWMEDKQSWLWSEGERMRRRTSLP
ILQHTYGINSLELKKKLASAAADSTEHVDLLLTRVKGISQRVDTMHLNDQ
DNLDAACTDQTDEELSEQLRLERDERALYQSVEDPNCNNSDDNDTDTISA
PADPPPTSSYTISTRRRKSPSGANKPTVIATSLRRLVNPNANRSGLSTAS
GVYPTPELASCTEKKLRKPSANVFEAARHTIASTVRMTQTALEKKQAQTQ
GDKLNQIKALRRHHSRSVNVNSNSEQESNVRHTRARSQPFRNNNNGVGGN
TAMAALKPTSSCLPTGTGTAALLANNLNNNNDCGIGTSGSSNNNHNNNNN
NSNLSNSLNNYNNNNNTTNNILASSGSSRTRSLALYSKRHKPA*

GH01148.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22838-PA 1052 GF22838-PA 1..623 1..622 3067 89.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23504-PA 1039 GG23504-PA 1..683 1..689 3631 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11379-PA 1099 GH11379-PA 2..606 1..594 2681 82.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
cdc14-PB 693 CG7134-PB 1..693 1..693 3667 100 Plus
cdc14-PC 700 CG7134-PC 1..689 1..689 3643 100 Plus
cdc14-PE 690 CG7134-PE 1..690 1..689 3631 99.9 Plus
cdc14-PD 1052 CG7134-PD 1..690 1..689 3631 99.9 Plus
cdc14-PA 1052 CG7134-PA 1..690 1..689 3631 99.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18084-PA 1117 GI18084-PA 1..621 1..613 2636 79.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18848-PA 1091 GL18848-PA 2..701 1..689 2838 78.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20127-PA 1067 GA20127-PA 2..701 1..689 2840 78.4 Plus
Dpse\GA18577-PA 176 GA18577-PA 38..155 217..330 157 30.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13298-PA 985 GM13298-PA 1..679 1..689 3635 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22466-PA 1039 GD22466-PA 1..679 1..689 3611 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16755-PA 709 GJ16755-PA 1..621 1..614 2676 81 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15301-PA 1109 GK15301-PA 1..684 1..689 2647 76 Plus
Dwil\GK14857-PA 176 GK14857-PA 38..155 217..330 155 30.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18332-PA 1054 GE18332-PA 1..690 1..689 3635 96.8 Plus

GH01148.hyp Sequence

Translation from 301 to 2382

> GH01148.hyp
MLDDDNSDLLVCASEMQEDRLYFVAFKKNIKPKNTVNTHYFSVDEEFIYE
NFYNDFGPLNICMLYRYCMKLNTKLNAKCHANKKIVHYTSMNPAKRLNAA
YLIGSYAIIYLNKTPQEAYRPLVAGEIPAYTRFCDASYGPSNFKISLLDC
LNAVHKGLQAGFFNFNDFDAEEYEYFERVENGDFNWIVPQKFIAFCGPHQ
KSKTLPNGYPCHAPERYFSYFRDNNVTTVIRLNAKVYHASSFENAGFDHK
DLFFIDGSTPSDAIMKKFLSICETTKGAIAVHCKAGLGRTGSLIGAYIMK
HYGFTALEAIAWLRLCRPGSVIGHQQQWMEDKQSWLWSEGERMRRRTSLP
ILQHTYGINSLELKKKLASAAADSTEHVDLLLTRVKGISQRVDTMHLNDQ
DNLDAACTDQTDEELSEQLRLERDERALYQSVEDPNCNNSDDNDTDTISA
PADPPPTSSYTISTRRRKSPSGANKPTVIATSLRRLVNPNANRSGLSTAS
GVYPTPELASCTEKKLRKPSANVFEAARHTIASTVRMTQTALEKKQAQTQ
GDKLNQIKALRRHHSRSVNVNSNSEQESNVRHTRARSQPFRNNNNGVGGN
TAMAALKPTSSCLPTGTGTAALLANNLNNNNDCGIGTSGSSNNNHNNNNN
NSNLSNSLNNYNNNNNTTNNILASSGSSRTRSLALYSKRHKPA*

GH01148.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
cdc14-PB 693 CG7134-PB 1..693 1..693 3667 100 Plus
cdc14-PC 700 CG7134-PC 1..689 1..689 3643 100 Plus
cdc14-PE 690 CG7134-PE 1..690 1..689 3631 99.9 Plus
cdc14-PD 1052 CG7134-PD 1..690 1..689 3631 99.9 Plus
cdc14-PA 1052 CG7134-PA 1..690 1..689 3631 99.9 Plus