![]() | BDGP Sequence Production Resources |
Search the DGRC for GH01161
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 11 |
Well: | 61 |
Vector: | pOT2 |
Associated Gene/Transcript | Traf6-RA |
Protein status: | GH01161.pep: gold |
Preliminary Size: | 2776 |
Sequenced Size: | 2785 |
Gene | Date | Evidence |
---|---|---|
CG10961 | 2001-01-01 | Release 2 assignment |
CG10961 | 2001-07-04 | Blastp of sequenced clone |
CG10961 | 2003-01-01 | Sim4 clustering to Release 3 |
Traf2 | 2008-04-29 | Release 5.5 accounting |
Traf6 | 2008-08-15 | Release 5.9 accounting |
Traf6 | 2008-12-18 | 5.12 accounting |
2785 bp (2785 high quality bases) assembled on 2001-07-04
GenBank Submission: AY047501
> GH01161.complete TTGGATACACAGCTGTTCCGCGGAGTCATGAACGAAAATTATTATTAAAA TTGAATTAGTTGATTCAAAGAGGATAGCCAGCAGGCGGCCAGAGGAGCAG CCAAGATGCAGCGAGTCCAGGCCGACCAAAAGCCAGCCAGAATGCACCAG CATGCACATACGCATTCGCACGCGCACAGTTTGCAGCATGCGGAGGAGAA GGAGCACAATAGCAATGAGATGACGACCAACTTGTCGTCGACTGGCCGAA TTGCGGCCAGTAGCAGTGCCACGCCCAGCGCAGCAGCGGGAGGCGGGGCC AGCGGAGCACCCACTCCGCCCAAGAGTCTGGCGCTCAATCAGAACCATCA CTATGCACCCGGTTCGGATACATCCGGGGAACAGGAGGAGGAGCTGCTGG ACTCGCGATACGAGTGCGCCATTTGCATCGATTGGCTAAATGAGCCGGTG TTGACGTCGTGCGGCCATCGATTTTGTCGCAGCTGCCTCACCGCCTGGAT GCAAAAGAACAATCAATGCTGCCCCATGGACAACAAGCGTCTGTCCGCCG AGCACGACATCTTTCCGGACAACTACACGCGCCGCGAGATCGAGCAACTC AAGCGAGATTGCCCCAACTCCTCGCTGGGCTGTTCGGTGGTTGCCTCGCC CATCGAACTGCATCGCCATCTGCCCAGTTGTCCCTATCGGCGGCAGCAGG AGCCGCAGGAGGAGAAGTGCCCGTTTGCCAAGATCAAGTGCGATTTTGTG GGCCGACCAGAGACCAATCAGTTGGAGGAGCACCTCAAGGCCGACATGCC GCATCACATGCAGCTGATGCTGCAGGCATTCCAGCAGACAGCCATTGCCA CCTGGCAGCCACACAAGCCCAGCACAAGTGGCGCCGCCGTGGAGAATGGT CATGGCCAGCAGCAGCTGCCGCCACCGCCGCAATATGCCAATGGTGTGGA TGAGCAGATTGTGCAAACGATGTACCAGAGAATTGTGGTTTTGGAACAGC GGACACGCGAGCAGGAGACGCGACTGGAGAATATGCAAAAGCAGCTGCGT CTGGCACGCCAGCAGGCGCCCGTTGATCCGCGCTACAGCAATGGCACGAT TGTGTGGCGCATCGAGCAGCTGGGCGCCTTGGTGGCTCGCCTGCGGGCCA ATGCCAACAATCAAGTGTACTCGCACGAGTGCTACACCTCGCCGCATGGC TACAAGTTCTGTGCGCGGCTGAACATTCAGCCGCGGAAACCGCATGTGCT CAGCTTGCATGTGCATCTGATGCAGTCGGAGAACGATTACCACTTGGACT GGCCCTTCAAGGGTCGCATCAAGTTGTGCATGGTGCATCCGGCAGATGCG ACGTTGTCGCAGCACGACACCATCATGACCAAGCCGGAGATTCTGGCGTT CCACAAGCCACGCGAAGCGATCAGCACACGGGGATTCGGTTTCCTCGAGT ACGCCAACATATCGAACATCATACAGCTGGGCTTCTGCGCCGACGATCGG CTGCTCATCAAGATCGAGATCAATATTGTGTGAATTGGCAATGGAAAAGG AAATGGAAACGCGGCGGCACCGATGTCTTCCGATTGCGTTAAGTTTGCAC CAAGGTGGATCGTGAATCATAGGGACCCAAAGGTAAACCGTGCAAGTAGA GAAAAATAGCCAGGTATTAGAAATACATAAGTACGCATGGTAGCAATCAT AATTGTCATCTTTTTGAAGCGAATTCATTCCTCTAGCAGTGTGAATTCGT TCCCTAGATAGACAATAATCCCATCTCCAAGGAGTGCTAGCCTAATGCTT GACCTGTTATCACCGTGGCAATATAGTTTAGAACTACTGATAACAAGGCG ACCCCGCGATTTGTGTGAAATTAGTCGATCGATCCACTTTAGTGAACTCG TGCGCCAACGTACAACAATATGCAATACCCGATAGCTGACACACACGTAT ATATATTTTATATAGACCTATATATATATAGTATACGAGAGACCGCTAAT AGTCACCGTCTAGCAAGCATCACATTAAGCAATCTTGATGATATTCAAAT ACTAATCGATATTAGCCTAGTATCCTAGAACTATCTCTTATTCTCTATTT GTATTTCTAGTGCTATACTATTACTTACTATTGGTTCTAGTGAACAAAAG TCAATGCAGATCACGTAAATACATAGGTCTATAATTGGAAAACTTAGTTG GTCTTGGGTTTACCCGTGATACCTTATCAATGCATTTTCAGTGCTTAATT AATCTTTAGTTTTCAAAACATTCTCGTCAATTTGATTGATTTTAACTATA TTTGTAACTGAGTACGTCCATTTGGCAGAAATGTCAGCCCTATTTTAAAC TAGTTTACTTAATATTGCATCTAGAATTATGCTAGGTTTTAATTCTTCAG TTTATCGCTTCGAAAAACTAGTAATGAGTGAACCGACCAGCGCATAGAAT ATAAAATATGTACCTTTTTTGAAAACAACGAAGGGGCGGGAATATATTTT TTTAACCTTTAACGCAAAAGCCTCCGTTTATGATCATCAATTTCGTTTGG AAAAAAAAAAAAAAAAACAACAAAGGCTGTATGTATTATTTTATCCCAAT ACTTAACTTAGTCCATAGCGATACGAACTACATGTTTAGAGCTAAGAATC CCGGGTAGAATGCACACGCTGGCAAGGATTAGAGCCCAGACTCATCTGGA CTTGGATCGCTGACAGCTTGGAACCCTCTCCGTTTAGGAAACCCCAATAA AGGACACTTTTGTACCGCAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Traf6-RA | 2777 | Traf6-RA | 1..2771 | 1..2771 | 13855 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 8046435..8049202 | 2768..1 | 13690 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 8154596..8157366 | 2771..1 | 13855 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 8162694..8165464 | 2771..1 | 13855 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 8046435..8049202 | 1..2768 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf6-RA | 1..1428 | 106..1533 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf6-RA | 1..1428 | 106..1533 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf6-RA | 1..1428 | 106..1533 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf6-RA | 1..1428 | 106..1533 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf6-RA | 1..1428 | 106..1533 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf6-RA | 1..2768 | 1..2768 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf6-RA | 1..2768 | 1..2768 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf6-RA | 21..2788 | 1..2768 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf6-RA | 1..2768 | 1..2768 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf6-RA | 21..2788 | 1..2768 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8154599..8157366 | 1..2768 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8154599..8157366 | 1..2768 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8154599..8157366 | 1..2768 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 8048632..8051399 | 1..2768 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8162697..8165464 | 1..2768 | 100 | Minus |
Translation from 105 to 1532
> GH01161.pep MQRVQADQKPARMHQHAHTHSHAHSLQHAEEKEHNSNEMTTNLSSTGRIA ASSSATPSAAAGGGASGAPTPPKSLALNQNHHYAPGSDTSGEQEEELLDS RYECAICIDWLNEPVLTSCGHRFCRSCLTAWMQKNNQCCPMDNKRLSAEH DIFPDNYTRREIEQLKRDCPNSSLGCSVVASPIELHRHLPSCPYRRQQEP QEEKCPFAKIKCDFVGRPETNQLEEHLKADMPHHMQLMLQAFQQTAIATW QPHKPSTSGAAVENGHGQQQLPPPPQYANGVDEQIVQTMYQRIVVLEQRT REQETRLENMQKQLRLARQQAPVDPRYSNGTIVWRIEQLGALVARLRANA NNQVYSHECYTSPHGYKFCARLNIQPRKPHVLSLHVHLMQSENDYHLDWP FKGRIKLCMVHPADATLSQHDTIMTKPEILAFHKPREAISTRGFGFLEYA NISNIIQLGFCADDRLLIKIEINIV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20974-PA | 476 | GF20974-PA | 20..476 | 21..475 | 1835 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17981-PA | 475 | GG17981-PA | 1..475 | 1..475 | 2526 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24860-PA | 480 | GH24860-PA | 76..480 | 70..475 | 1799 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Traf6-PA | 475 | CG10961-PA | 1..475 | 1..475 | 2563 | 100 | Plus |
CG9014-PB | 328 | CG9014-PB | 10..108 | 91..194 | 162 | 35.2 | Plus |
CG9014-PA | 328 | CG9014-PA | 10..108 | 91..194 | 162 | 35.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14410-PA | 480 | GI14410-PA | 79..480 | 70..475 | 1811 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20189-PA | 445 | GL20189-PA | 1..445 | 1..475 | 1829 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10670-PA | 464 | GA10670-PA | 1..464 | 1..475 | 1952 | 77.5 | Plus |
Dpse\GA27790-PA | 69 | GA27790-PA | 8..58 | 208..258 | 255 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11204-PA | 468 | GM11204-PA | 1..468 | 1..475 | 2442 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16124-PA | 87 | GD16124-PA | 1..87 | 389..475 | 480 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18758-PA | 480 | GJ18758-PA | 56..480 | 48..475 | 1816 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19915-PA | 468 | GK19915-PA | 49..468 | 70..475 | 1680 | 73.6 | Plus |
Translation from 105 to 1532
> GH01161.hyp MQRVQADQKPARMHQHAHTHSHAHSLQHAEEKEHNSNEMTTNLSSTGRIA ASSSATPSAAAGGGASGAPTPPKSLALNQNHHYAPGSDTSGEQEEELLDS RYECAICIDWLNEPVLTSCGHRFCRSCLTAWMQKNNQCCPMDNKRLSAEH DIFPDNYTRREIEQLKRDCPNSSLGCSVVASPIELHRHLPSCPYRRQQEP QEEKCPFAKIKCDFVGRPETNQLEEHLKADMPHHMQLMLQAFQQTAIATW QPHKPSTSGAAVENGHGQQQLPPPPQYANGVDEQIVQTMYQRIVVLEQRT REQETRLENMQKQLRLARQQAPVDPRYSNGTIVWRIEQLGALVARLRANA NNQVYSHECYTSPHGYKFCARLNIQPRKPHVLSLHVHLMQSENDYHLDWP FKGRIKLCMVHPADATLSQHDTIMTKPEILAFHKPREAISTRGFGFLEYA NISNIIQLGFCADDRLLIKIEINIV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Traf6-PA | 475 | CG10961-PA | 1..475 | 1..475 | 2563 | 100 | Plus |
CG9014-PB | 328 | CG9014-PB | 10..108 | 91..194 | 162 | 35.2 | Plus |
CG9014-PA | 328 | CG9014-PA | 10..108 | 91..194 | 162 | 35.2 | Plus |