Clone GH01248 Report

Search the DGRC for GH01248

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:12
Well:48
Vector:pOT2
Associated Gene/TranscriptCG33107-RA
Protein status:GH01248.pep: gold
Preliminary Size:1308
Sequenced Size:1182

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5275 2001-01-01 Release 2 assignment
CG33107 2002-06-07 Blastp of sequenced clone
CG33107 2003-01-01 Sim4 clustering to Release 3
CG33107 2008-04-29 Release 5.5 accounting
CG33107 2008-08-15 Release 5.9 accounting
CG33107 2008-12-18 5.12 accounting

Clone Sequence Records

GH01248.complete Sequence

1182 bp (1182 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119456

> GH01248.complete
AAAAATCGCCGCACGTGGAGCAACAATAATGGTATGACCGTTTACGTTCA
TGCGATACAGCGCTTAACTAGGCGTTAGGCTATTTGACCCACCCCTTGGT
GCCTGGTCACTCTTTCAGTTTATTATTTCTATTTATTTGCTTTGCGCATT
TTTTACCGCCAATACAAAATGAATCTATCTGATTCATCGTTGAATAATTC
CCTCGTGGAAGTGGATGAAATGCGCCTAGGCTATGACCACGAATCCATCA
TGTCCTTTCTCCGGAAGTCGTCCATCAAGCATTTGTTTCCTTACGCTGCA
GAAACCACAGACGGCAAACAGTTGCTGAATCGCATGATGGCTACCTTAGC
CGGGAAGCTGGAACTCAATTTGCAGCAGCTGCTCGATCTGTTTACCCTCT
CCATTATGATGATGACGTACCAAAGGGACAACGTTCTGCTGATGAAGGAG
CGCTACATGATGGTGGATGTGGTGTGTCACCTGGCAGAGTCCCTGGACTC
GGAGGAGATGTTCTACATGGCCAGTGGGTTGTACGAAAACCTTATCACTG
GCGTGGGTATGGAGCGCCTGGAAAGAGTGCTGGACCTGCAGGCCGCGATT
CCCGCCATGGTAGAATCCTGCCATCTTGGCAACGATGTAGCTATGGCCCT
GCTACTCACCATAATGGGACGGTACACGGGAGAACCAGTTGAACTGGACC
AGAAGGAATATGCTCTCAAGGCTTTTGAAATGGCCAAAACGGTCAACTGG
CGCCAGTTGGCAAACAGTGGACGCCAGGCAGATTTGTTTATGCTCATCCG
CACTTTCAGCATGATCATCAATTGCAGACGTATACGCGAGGAGTGTCCTG
ATTGGAAGGACAATCTGGGTGCCGAGATACACAAGTACTTCCTGCAGGTG
CGCATGGATCACTCCGCCGCCTATGGCGACTTTGAAATGATGATTGAACG
ATTCATAGCTTATTGCGTGGTTCGGGGCGCCTCAACAACACCCCAACTTT
GCAGCTTCAAGATTTCCGAGCAAACAAATTCAGAGTTCCAATAATTGCTG
GAGTGTAGTTATGTTAAGTAGTTTACTTATTATTACAGTCTAAGAGTAAC
ATAGGTATCATACAGCTGAGATCAAAAAAGCAAACCAAATATATCATTTC
TTAAGTAGTGGAAAAAAAAAAAAAAAAAAAAA

GH01248.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG33107-RA 1243 CG33107-RA 1..1162 1..1162 5810 100 Plus
CG6937-RA 1334 CG6937-RA 1..53 53..1 265 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18408038..18408358 321..1 1500 97.8 Minus
chr3R 27901430 chr3R 18407245..18407475 942..712 1155 100 Minus
chr3R 27901430 chr3R 18407533..18407739 712..506 1005 99 Minus
chr3R 27901430 chr3R 18407796..18407983 507..320 910 98.9 Minus
chr3R 27901430 chr3R 18406900..18407071 1161..990 860 100 Minus
chr3R 27901430 chr3R 18407141..18407188 989..942 240 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:25:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22584492..22584812 321..1 1605 100 Minus
3R 32079331 3R 22583699..22583929 942..712 1155 100 Minus
3R 32079331 3R 22583987..22584193 712..506 1035 100 Minus
3R 32079331 3R 22584250..22584437 507..320 940 100 Minus
3R 32079331 3R 22583351..22583523 1162..990 865 100 Minus
3R 32079331 3R 22583595..22583642 989..942 240 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22325323..22325643 321..1 1605 100 Minus
3R 31820162 3R 22324530..22324760 942..712 1155 100 Minus
3R 31820162 3R 22324818..22325024 712..506 1035 100 Minus
3R 31820162 3R 22325081..22325268 507..320 940 100 Minus
3R 31820162 3R 22324182..22324354 1162..990 865 100 Minus
3R 31820162 3R 22324426..22324473 989..942 240 100 Minus
Blast to na_te.dros performed on 2019-03-17 00:05:21 has no hits.

GH01248.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:06:21 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18407534..18407737 508..711 99 <- Minus
chr3R 18406900..18407071 990..1161 100 <- Minus
chr3R 18407141..18407187 943..989 100 <- Minus
chr3R 18407245..18407475 712..942 100 <- Minus
chr3R 18407796..18407981 322..507 98 <- Minus
chr3R 18408038..18408358 1..321 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:02:57 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 1..876 169..1044 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:27:52 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 1..876 169..1044 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:57:08 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 1..876 169..1044 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:18:21 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 1..876 169..1044 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:09:51 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 1..876 169..1044 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:56:40 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 1..1161 1..1161 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:27:52 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 1..1161 1..1161 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:08 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 1..1067 95..1161 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:18:21 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 1..1161 1..1161 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:51 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 1..1067 95..1161 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:06:21 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22583352..22583523 990..1161 100 <- Minus
3R 22583595..22583641 943..989 100 <- Minus
3R 22583699..22583929 712..942 100 <- Minus
3R 22583988..22584191 508..711 100 <- Minus
3R 22584250..22584435 322..507 100 <- Minus
3R 22584492..22584812 1..321 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:06:21 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22583352..22583523 990..1161 100 <- Minus
3R 22583595..22583641 943..989 100 <- Minus
3R 22583699..22583929 712..942 100 <- Minus
3R 22583988..22584191 508..711 100 <- Minus
3R 22584250..22584435 322..507 100 <- Minus
3R 22584492..22584812 1..321 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:06:21 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22583352..22583523 990..1161 100 <- Minus
3R 22583595..22583641 943..989 100 <- Minus
3R 22583699..22583929 712..942 100 <- Minus
3R 22583988..22584191 508..711 100 <- Minus
3R 22584250..22584435 322..507 100 <- Minus
3R 22584492..22584812 1..321 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:08 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18409972..18410157 322..507 100 <- Minus
arm_3R 18409421..18409651 712..942 100 <- Minus
arm_3R 18409710..18409913 508..711 100 <- Minus
arm_3R 18409074..18409245 990..1161 100 <- Minus
arm_3R 18409317..18409363 943..989 100 <- Minus
arm_3R 18410214..18410534 1..321 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:51:45 Download gff for GH01248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22325081..22325266 322..507 100 <- Minus
3R 22324530..22324760 712..942 100 <- Minus
3R 22324819..22325022 508..711 100 <- Minus
3R 22325323..22325643 1..321 100   Minus
3R 22324183..22324354 990..1161 100 <- Minus
3R 22324426..22324472 943..989 100 <- Minus

GH01248.hyp Sequence

Translation from 168 to 1043

> GH01248.hyp
MNLSDSSLNNSLVEVDEMRLGYDHESIMSFLRKSSIKHLFPYAAETTDGK
QLLNRMMATLAGKLELNLQQLLDLFTLSIMMMTYQRDNVLLMKERYMMVD
VVCHLAESLDSEEMFYMASGLYENLITGVGMERLERVLDLQAAIPAMVES
CHLGNDVAMALLLTIMGRYTGEPVELDQKEYALKAFEMAKTVNWRQLANS
GRQADLFMLIRTFSMIINCRRIREECPDWKDNLGAEIHKYFLQVRMDHSA
AYGDFEMMIERFIAYCVVRGASTTPQLCSFKISEQTNSEFQ*

GH01248.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG33107-PA 291 CG33107-PA 1..291 1..291 1488 100 Plus

GH01248.pep Sequence

Translation from 168 to 1043

> GH01248.pep
MNLSDSSLNNSLVEVDEMRLGYDHESIMSFLRKSSIKHLFPYAAETTDGK
QLLNRMMATLAGKLELNLQQLLDLFTLSIMMMTYQRDNVLLMKERYMMVD
VVCHLAESLDSEEMFYMASGLYENLITGVGMERLERVLDLQAAIPAMVES
CHLGNDVAMALLLTIMGRYTGEPVELDQKEYALKAFEMAKTVNWRQLANS
GRQADLFMLIRTFSMIINCRRIREECPDWKDNLGAEIHKYFLQVRMDHSA
AYGDFEMMIERFIAYCVVRGASTTPQLCSFKISEQTNSEFQ*

GH01248.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16144-PA 298 GF16144-PA 1..293 1..291 991 63.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12503-PA 298 GG12503-PA 1..291 1..291 1229 82.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17151-PA 269 GH17151-PA 17..265 19..273 359 33.1 Plus
Dgri\GH24850-PA 360 GH24850-PA 101..340 19..259 303 29.6 Plus
Dgri\GH10064-PA 192 GH10064-PA 17..192 19..197 231 31.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG33107-PA 291 CG33107-PA 1..291 1..291 1488 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16187-PA 414 GI16187-PA 159..412 21..272 349 32.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13678-PA 273 GL13678-PA 6..270 3..271 535 43.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17287-PA 277 GA17287-PA 6..274 3..271 519 41.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23635-PA 291 GM23635-PA 1..291 1..291 1359 91.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18445-PA 291 GD18445-PA 1..291 1..291 1366 91.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16675-PA 484 GJ16675-PA 226..482 22..272 422 36.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11784-PA 286 GK11784-PA 6..282 1..275 548 39.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24023-PA 289 GE24023-PA 1..289 1..289 1237 82.7 Plus