Clone GH01314 Report

Search the DGRC for GH01314

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:13
Well:14
Vector:pOT2
Associated Gene/TranscriptFeCH-RC
Protein status:GH01314.pep: gold
Preliminary Size:1349
Sequenced Size:1427

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2098 2001-01-01 Release 2 assignment
CG2098 2001-09-19 Blastp of sequenced clone
CG2098 2003-01-01 Sim4 clustering to Release 3
ferrochelatase 2008-04-29 Release 5.5 accounting
ferrochelatase 2008-08-15 Release 5.9 accounting
ferrochelatase 2008-12-18 5.12 accounting

Clone Sequence Records

GH01314.complete Sequence

1427 bp (1427 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058251

> GH01314.complete
ATCAATTTGGGTCAATTTAAAAGGAACTATGTTTTTGCATAACACAAAGT
TTTGCAGACTGGCAAGTGGTCTGGCAGGAGGAGTGCGCAACCTGAGCGGC
CAAAAACCGAAGACCGCGATCCTAATGCTGAACATGGGCGGTCCGACCCA
CACGGACCAGGTGCATGACTACCTCCTGCGTATTATGACCGACCGGGACA
TGATCCAGCTGCCGGTGCAGAGCCGTCTTGGTCCGTGGATCGCCCAGCGC
AGGACGCCCGAGGTACAGAAGAAGTACAAGGAGATCGGCGGTGGTTCACC
GATTCTTAAGTGGACCGAGCTGCAGGGCCAGCTCATGTGCGAGCAGTTGG
ACAGAATCTCCCCGGAGACAGCACCTCACAAGCACTACGTCGGTTTCCGC
TACGTGAATCCCCTCACTGAGAACACGCTGGCCGAGATCGAAAAGGACAA
ACCAGAGCGCGTTGTACTCTTTTCACAATATCCACAGTACAGCTGCGCCA
CCTCCGGATCCAGCTTTAACTCCATATTTACTCATTATCGGAGCAATAAT
CTGCCCTCGGATATCAAATGGAGCATTATCGACAGGTGGGGCACTCATCC
ACTTCTAATCAAAACGTTTGCCCAGCGAATTCGCGACGAGCTGGCCAAAT
TTGTGGAAACGAAACGAAATGATGTGGTCATCCTCTTCACTGCCCACTCC
CTTCCCCTTAAGGCTGTGAACCGGGGTGACGCGTATCCCTCGGAGATTGG
TGCTAGCGTACACATGGTGATGCAGGAACTTGGTCAGACGAATCCCTACA
GCCTGGCATGGCAATCCAAGGTGGGCCCGCTACCCTGGCTGGCGCCCGCA
ACTGATGATGCCATTAAGGTGTAACTTTAATGCCGGATTTCCATTCCCAT
CCACTAAAACCAATCCCATCTTTACAGGGCTATGTTAAGCAAGGCCTGAA
GAACTTCATCCTTGTGCCCATTGCCTTCGTGAACGAGCACATCGAGACGC
TGCATGAGCTCGACATCGAGTACTGCGACGAACTGGCCAAGGAGGTAGGC
GTAGAGGAAATCCGTCGAGCTGCAACCCCCAACGACCACCCGCTGTTCAT
CGACGCCCTGACAAACGTTGTGGCAGACCACCTGAAGTCCCAGCAGGCAG
TCAACCCCAAGTTCCTCATGCGTTGTCCCATGTGCTCCAATCCAAAGTGC
AGGGAGAGCAAAAGCTGGTACCGCCAGCTCTGCTCGAACTAAGCAACCAA
GTCAACTTGCGGGGGTGGGTAGCACTGCGTGACAAGCGTTTCAAGTGCTG
CAGCTGGAGGAGAACATTTATGCATTCATTTGGGTTTCTGGGGGATTGGT
TTTCACATACTGGTGTTTATTTCTTTCCGCTTTAATTAAAGTCTCTGTTG
AACAGTATAAAAAAAAAAAAAAAAAAA

GH01314.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
ferrochelatase-RC 1443 ferrochelatase-RC 30..1443 1..1414 7070 100 Plus
ferrochelatase-RA 1508 ferrochelatase-RA 86..954 1..869 4345 100 Plus
ferrochelatase.a 1332 ferrochelatase.a 26..846 1..821 4105 100 Plus
ferrochelatase-RA 1508 ferrochelatase-RA 952..1440 926..1414 2445 100 Plus
ferrochelatase.a 1332 ferrochelatase.a 844..1332 926..1414 2445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27632818..27633679 1408..547 4310 100 Minus
chr3R 27901430 chr3R 27634098..27634477 445..66 1900 100 Minus
chr3R 27901430 chr3R 27633735..27633836 546..445 510 100 Minus
chr3R 27901430 chr3R 27634529..27634596 68..1 340 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:25:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31810454..31811321 1414..547 4340 100 Minus
3R 32079331 3R 31811740..31812119 445..66 1900 100 Minus
3R 32079331 3R 31811377..31811478 546..445 510 100 Minus
3R 32079331 3R 31812171..31812238 68..1 340 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31551285..31552152 1414..547 4340 100 Minus
3R 31820162 3R 31552571..31552950 445..66 1900 100 Minus
3R 31820162 3R 31552208..31552309 546..445 510 100 Minus
3R 31820162 3R 31553002..31553069 68..1 340 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:14:33 has no hits.

GH01314.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:15:34 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27634099..27634477 66..444 100 <- Minus
chr3R 27634532..27634596 1..65 100   Minus
chr3R 27633735..27633836 445..546 100 <- Minus
chr3R 27632818..27633679 547..1408 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:03:12 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RC 1..846 29..874 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:58 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RC 1..846 29..874 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:22:27 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
FeCH-RC 1..846 29..874 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:51 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RC 1..846 29..874 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:32:30 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
FeCH-RC 1..846 29..874 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:02:17 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RC 26..1433 1..1408 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:58 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RC 26..1433 1..1408 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:27 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
FeCH-RC 59..1466 1..1408 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:51 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RC 26..1433 1..1408 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:32:30 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
FeCH-RC 59..1466 1..1408 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:34 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31810460..31811321 547..1408 100 <- Minus
3R 31811377..31811478 445..546 100 <- Minus
3R 31811741..31812119 66..444 100 <- Minus
3R 31812174..31812238 1..65 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:34 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31810460..31811321 547..1408 100 <- Minus
3R 31811377..31811478 445..546 100 <- Minus
3R 31811741..31812119 66..444 100 <- Minus
3R 31812174..31812238 1..65 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:34 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31810460..31811321 547..1408 100 <- Minus
3R 31811377..31811478 445..546 100 <- Minus
3R 31811741..31812119 66..444 100 <- Minus
3R 31812174..31812238 1..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:27 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27636182..27637043 547..1408 100 <- Minus
arm_3R 27637099..27637200 445..546 100 <- Minus
arm_3R 27637463..27637841 66..444 100 <- Minus
arm_3R 27637896..27637960 1..65 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:19:34 Download gff for GH01314.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31551291..31552152 547..1408 100 <- Minus
3R 31552208..31552309 445..546 100 <- Minus
3R 31552572..31552950 66..444 100 <- Minus
3R 31553005..31553069 1..65 100   Minus

GH01314.hyp Sequence

Translation from 1 to 873

> GH01314.hyp
SIWVNLKGTMFLHNTKFCRLASGLAGGVRNLSGQKPKTAILMLNMGGPTH
TDQVHDYLLRIMTDRDMIQLPVQSRLGPWIAQRRTPEVQKKYKEIGGGSP
ILKWTELQGQLMCEQLDRISPETAPHKHYVGFRYVNPLTENTLAEIEKDK
PERVVLFSQYPQYSCATSGSSFNSIFTHYRSNNLPSDIKWSIIDRWGTHP
LLIKTFAQRIRDELAKFVETKRNDVVILFTAHSLPLKAVNRGDAYPSEIG
ASVHMVMQELGQTNPYSLAWQSKVGPLPWLAPATDDAIKV*

GH01314.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-PC 281 CG2098-PC 1..281 10..290 1490 100 Plus
FeCH-PA 384 CG2098-PA 1..280 10..289 1486 100 Plus
FeCH-PB 226 CG2098-PB 12..122 179..289 568 97.3 Plus

GH01314.pep Sequence

Translation from 28 to 873

> GH01314.pep
MFLHNTKFCRLASGLAGGVRNLSGQKPKTAILMLNMGGPTHTDQVHDYLL
RIMTDRDMIQLPVQSRLGPWIAQRRTPEVQKKYKEIGGGSPILKWTELQG
QLMCEQLDRISPETAPHKHYVGFRYVNPLTENTLAEIEKDKPERVVLFSQ
YPQYSCATSGSSFNSIFTHYRSNNLPSDIKWSIIDRWGTHPLLIKTFAQR
IRDELAKFVETKRNDVVILFTAHSLPLKAVNRGDAYPSEIGASVHMVMQE
LGQTNPYSLAWQSKVGPLPWLAPATDDAIKV*

GH01314.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17503-PA 384 GF17503-PA 1..280 1..280 1429 93.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11845-PA 384 GG11845-PA 1..280 1..280 1480 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17474-PA 390 GH17474-PA 1..286 1..280 1344 87.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-PC 281 CG2098-PC 1..281 1..281 1490 100 Plus
FeCH-PA 384 CG2098-PA 1..280 1..280 1486 100 Plus
FeCH-PB 226 CG2098-PB 12..122 170..280 568 97.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22800-PA 387 GI22800-PA 1..283 1..280 1339 87.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23499-PA 388 GL23499-PA 1..283 1..280 1367 89.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15238-PB 308 GA15238-PB 1..284 1..281 1372 89.8 Plus
Dpse\GA15238-PA 388 GA15238-PA 1..283 1..280 1371 89.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16409-PA 384 GM16409-PA 1..280 1..280 1492 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16217-PA 384 GD16217-PA 1..280 1..280 1496 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22803-PA 387 GJ22803-PA 1..283 1..280 1357 89.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10937-PA 383 GK10937-PA 1..279 1..280 1350 88.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23292-PA 384 GE23292-PA 1..280 1..280 1496 98.6 Plus