BDGP Sequence Production Resources |
Search the DGRC for GH01354
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 13 |
Well: | 54 |
Vector: | pOT2 |
Associated Gene/Transcript | Sbp2-RA |
Protein status: | GH01354.pep: gold |
Preliminary Size: | 1229 |
Sequenced Size: | 1120 |
Gene | Date | Evidence |
---|---|---|
CG7066 | 2001-01-01 | Release 2 assignment |
CG7066 | 2001-12-12 | Blastp of sequenced clone |
CG7066 | 2003-01-01 | Sim4 clustering to Release 3 |
Sbp2 | 2008-04-29 | Release 5.5 accounting |
Sbp2 | 2008-08-15 | Release 5.9 accounting |
Sbp2 | 2008-12-18 | 5.12 accounting |
1120 bp (1120 high quality bases) assembled on 2001-12-12
GenBank Submission: AY070491
> GH01354.complete CTATTTTAGAGATGCACTAAGAATCCACAATAAATGACTGAAAAAATAAG GAGGAGCAGGAATCAGGATGTCCAGGATACAGCGATCAAGATTACTCCAC GCAGCTCCAAGTACAAAAACCAGCACAGGAAACGGGAGCAGCAAACCTCT CTTCTGGACTTTGTCATCAAGCCGAGACCAAAAACACAAAGGCAAACAAA GGCACATAAACTTCAAAAGACACATTTAGCCATAACAAGAGGTAGCTACA TAGTTTACAAACCCAAGGGCAAAACCCGCCTTGATCCCAAGAAGAAGATC ACCAGGTTGAAGAAGTCCGTACGTGTATATCGCACTTCAAAGAAGGCGGA GAGAGAAGTCGCAGAGAATGATCTTGAAGGAGTCCCAGTAGTTGGTCAAG ATATCAATCCGAATGCTATTCCGCTGGAGCAACAAGTTCAAAACCTATCA CTTAGTAAAACCCCTGCACCCAACAACCCTTCACAAGCAAAAACAGTACA TGCCATTCACTCACGGCGATTTAGAAGCTATTGTGACAACTGCACCCGTC CTCGCCTCAAGGAGTTGTCCACTCAGTTGTTAAGGGACCTGGATCGATTT CAGAAGCGCGCCTTTGCCAAAAACGAGATTAAAGCGCGTGCACATCCCCG CCTGGTTTTGGGTGTTCGAGAAGCTCTGGCGAGGCTAAGGATAAACAAGG TGAAATTGTTGTTCCTGGCCACTGACTGCGAAATCTGCCCCGGCGAAAGT GGTCTAGATGCGACTATAGAAGGCTTGAAATTCCAATGCCAGCAGCAACA AGTGCCCTATTGCTTTCCTCTGCTGAGAAGGGAGCTTTCTTATGCCCTCC AAAAGCGAGCGCAAATTTGTTGCGTTGCTATCCTTGACTTTGACGGAGCG AATGCAACCTACGCAGATCTTCTTAATGAAATAGAGGATGCCCGTGCGGA GTACAAACGCAGAACTGCTTCGTGAGAGTTTATTTCGTGACAAATAAATA TAAGTAAAAGTGCCAGGAGGACGTGCTCGAAACATCGAATAAAACATTCA AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 8296171..8296697 | 1..527 | 2590 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 8297033..8297336 | 749..1052 | 1520 | 100 | Plus |
chr3L | 24539361 | chr3L | 8296757..8296982 | 526..751 | 1130 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 8296171..8296697 | 1..527 | 99 | -> | Plus |
chr3L | 8296759..8296979 | 528..748 | 100 | -> | Plus |
chr3L | 8297033..8297336 | 749..1052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sbp2-RA | 1..942 | 34..975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sbp2-RA | 1..942 | 34..975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sbp2-RA | 1..942 | 34..975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sbp2-RA | 1..942 | 34..975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sbp2-RA | 1..942 | 34..975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sbp2-RA | 1..1052 | 1..1052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sbp2-RA | 1..1052 | 1..1052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sbp2-RA | 4..1055 | 1..1052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sbp2-RA | 1..1052 | 1..1052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sbp2-RA | 4..1055 | 1..1052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8304160..8304686 | 1..527 | 100 | -> | Plus |
3L | 8304748..8304968 | 528..748 | 100 | -> | Plus |
3L | 8305022..8305325 | 749..1052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8304160..8304686 | 1..527 | 100 | -> | Plus |
3L | 8304748..8304968 | 528..748 | 100 | -> | Plus |
3L | 8305022..8305325 | 749..1052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8304160..8304686 | 1..527 | 100 | -> | Plus |
3L | 8304748..8304968 | 528..748 | 100 | -> | Plus |
3L | 8305022..8305325 | 749..1052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 8297260..8297786 | 1..527 | 100 | -> | Plus |
arm_3L | 8297848..8298068 | 528..748 | 100 | -> | Plus |
arm_3L | 8298122..8298425 | 749..1052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8297260..8297786 | 1..527 | 100 | -> | Plus |
3L | 8297848..8298068 | 528..748 | 100 | -> | Plus |
3L | 8298122..8298425 | 749..1052 | 100 | Plus |
Translation from 33 to 974
> GH01354.hyp MTEKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPK TQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYR TSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPS QAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIK ARAHPRLVLGVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKF QCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYADLLNEI EDARAEYKRRTAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sbp2-PA | 313 | CG7066-PA | 1..313 | 1..313 | 1604 | 100 | Plus |
Translation from 33 to 974
> GH01354.pep MTEKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPK TQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYR TSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPS QAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIK ARAHPRLVLGVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKF QCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYADLLNEI EDARAEYKRRTAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10874-PA | 329 | GF10874-PA | 26..328 | 16..312 | 883 | 63.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14299-PA | 321 | GG14299-PA | 14..321 | 6..313 | 1391 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16097-PA | 316 | GH16097-PA | 33..316 | 24..313 | 757 | 54 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sbp2-PA | 313 | CG7066-PA | 1..313 | 1..313 | 1604 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12361-PA | 314 | GI12361-PA | 33..314 | 24..313 | 748 | 55.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22547-PA | 319 | GL22547-PA | 21..318 | 11..312 | 799 | 59.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20073-PA | 319 | GA20073-PA | 21..318 | 11..312 | 795 | 59.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25040-PA | 321 | GM25040-PA | 1..321 | 1..313 | 1514 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14076-PA | 321 | GD14076-PA | 14..321 | 6..313 | 1533 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12253-PA | 313 | GJ12253-PA | 32..313 | 23..313 | 799 | 57 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17193-PA | 332 | GK17193-PA | 24..331 | 15..312 | 710 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20727-PA | 307 | GE20727-PA | 7..307 | 6..313 | 1305 | 82.8 | Plus |