Clone GH01354 Report

Search the DGRC for GH01354

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:13
Well:54
Vector:pOT2
Associated Gene/TranscriptSbp2-RA
Protein status:GH01354.pep: gold
Preliminary Size:1229
Sequenced Size:1120

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7066 2001-01-01 Release 2 assignment
CG7066 2001-12-12 Blastp of sequenced clone
CG7066 2003-01-01 Sim4 clustering to Release 3
Sbp2 2008-04-29 Release 5.5 accounting
Sbp2 2008-08-15 Release 5.9 accounting
Sbp2 2008-12-18 5.12 accounting

Clone Sequence Records

GH01354.complete Sequence

1120 bp (1120 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070491

> GH01354.complete
CTATTTTAGAGATGCACTAAGAATCCACAATAAATGACTGAAAAAATAAG
GAGGAGCAGGAATCAGGATGTCCAGGATACAGCGATCAAGATTACTCCAC
GCAGCTCCAAGTACAAAAACCAGCACAGGAAACGGGAGCAGCAAACCTCT
CTTCTGGACTTTGTCATCAAGCCGAGACCAAAAACACAAAGGCAAACAAA
GGCACATAAACTTCAAAAGACACATTTAGCCATAACAAGAGGTAGCTACA
TAGTTTACAAACCCAAGGGCAAAACCCGCCTTGATCCCAAGAAGAAGATC
ACCAGGTTGAAGAAGTCCGTACGTGTATATCGCACTTCAAAGAAGGCGGA
GAGAGAAGTCGCAGAGAATGATCTTGAAGGAGTCCCAGTAGTTGGTCAAG
ATATCAATCCGAATGCTATTCCGCTGGAGCAACAAGTTCAAAACCTATCA
CTTAGTAAAACCCCTGCACCCAACAACCCTTCACAAGCAAAAACAGTACA
TGCCATTCACTCACGGCGATTTAGAAGCTATTGTGACAACTGCACCCGTC
CTCGCCTCAAGGAGTTGTCCACTCAGTTGTTAAGGGACCTGGATCGATTT
CAGAAGCGCGCCTTTGCCAAAAACGAGATTAAAGCGCGTGCACATCCCCG
CCTGGTTTTGGGTGTTCGAGAAGCTCTGGCGAGGCTAAGGATAAACAAGG
TGAAATTGTTGTTCCTGGCCACTGACTGCGAAATCTGCCCCGGCGAAAGT
GGTCTAGATGCGACTATAGAAGGCTTGAAATTCCAATGCCAGCAGCAACA
AGTGCCCTATTGCTTTCCTCTGCTGAGAAGGGAGCTTTCTTATGCCCTCC
AAAAGCGAGCGCAAATTTGTTGCGTTGCTATCCTTGACTTTGACGGAGCG
AATGCAACCTACGCAGATCTTCTTAATGAAATAGAGGATGCCCGTGCGGA
GTACAAACGCAGAACTGCTTCGTGAGAGTTTATTTCGTGACAAATAAATA
TAAGTAAAAGTGCCAGGAGGACGTGCTCGAAACATCGAATAAAACATTCA
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

GH01354.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-RA 1124 Sbp2-RA 62..1121 1..1060 5285 99.9 Plus
Sbp2.a 1051 Sbp2.a 1..748 1..748 3740 100 Plus
Sbp2.a 1051 Sbp2.a 749..1051 758..1060 1500 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8296171..8296697 1..527 2590 99.4 Plus
chr3L 24539361 chr3L 8297033..8297336 749..1052 1520 100 Plus
chr3L 24539361 chr3L 8296757..8296982 526..751 1130 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:25:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8304160..8304686 1..527 2635 100 Plus
3L 28110227 3L 8305022..8305333 749..1060 1545 99.7 Plus
3L 28110227 3L 8304746..8304971 526..751 1130 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8297260..8297786 1..527 2635 100 Plus
3L 28103327 3L 8298122..8298433 749..1060 1545 99.6 Plus
3L 28103327 3L 8297846..8298071 526..751 1130 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:13:49 has no hits.

GH01354.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:14:52 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8296171..8296697 1..527 99 -> Plus
chr3L 8296759..8296979 528..748 100 -> Plus
chr3L 8297033..8297336 749..1052 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:03:22 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 1..942 34..975 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:21 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 1..942 34..975 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:40 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 1..942 34..975 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:31 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 1..942 34..975 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:27 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 1..942 34..975 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:52:42 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 1..1052 1..1052 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:21 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 1..1052 1..1052 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:40 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 4..1055 1..1052 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:31 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 1..1052 1..1052 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:27 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 4..1055 1..1052 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:14:52 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8304160..8304686 1..527 100 -> Plus
3L 8304748..8304968 528..748 100 -> Plus
3L 8305022..8305325 749..1052 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:14:52 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8304160..8304686 1..527 100 -> Plus
3L 8304748..8304968 528..748 100 -> Plus
3L 8305022..8305325 749..1052 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:14:52 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8304160..8304686 1..527 100 -> Plus
3L 8304748..8304968 528..748 100 -> Plus
3L 8305022..8305325 749..1052 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:40 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8297260..8297786 1..527 100 -> Plus
arm_3L 8297848..8298068 528..748 100 -> Plus
arm_3L 8298122..8298425 749..1052 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:21:51 Download gff for GH01354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8297260..8297786 1..527 100 -> Plus
3L 8297848..8298068 528..748 100 -> Plus
3L 8298122..8298425 749..1052 100   Plus

GH01354.hyp Sequence

Translation from 33 to 974

> GH01354.hyp
MTEKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPK
TQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYR
TSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPS
QAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIK
ARAHPRLVLGVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKF
QCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYADLLNEI
EDARAEYKRRTAS*

GH01354.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-PA 313 CG7066-PA 1..313 1..313 1604 100 Plus

GH01354.pep Sequence

Translation from 33 to 974

> GH01354.pep
MTEKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPK
TQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYR
TSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPS
QAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIK
ARAHPRLVLGVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKF
QCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYADLLNEI
EDARAEYKRRTAS*

GH01354.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10874-PA 329 GF10874-PA 26..328 16..312 883 63.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14299-PA 321 GG14299-PA 14..321 6..313 1391 85.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16097-PA 316 GH16097-PA 33..316 24..313 757 54 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-PA 313 CG7066-PA 1..313 1..313 1604 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12361-PA 314 GI12361-PA 33..314 24..313 748 55.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22547-PA 319 GL22547-PA 21..318 11..312 799 59.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20073-PA 319 GA20073-PA 21..318 11..312 795 59.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25040-PA 321 GM25040-PA 1..321 1..313 1514 91 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14076-PA 321 GD14076-PA 14..321 6..313 1533 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12253-PA 313 GJ12253-PA 32..313 23..313 799 57 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17193-PA 332 GK17193-PA 24..331 15..312 710 50.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20727-PA 307 GE20727-PA 7..307 6..313 1305 82.8 Plus