Clone GH01453 Report

Search the DGRC for GH01453

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:14
Well:53
Vector:pOT2
Associated Gene/Transcriptobst-E-RA
Protein status:GH01453.pep: gold
Preliminary Size:1214
Sequenced Size:989

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11142 2001-01-01 Release 2 assignment
CG11142 2001-11-29 Blastp of sequenced clone
CG11142 2003-01-01 Sim4 clustering to Release 3
obst-E 2008-04-29 Release 5.5 accounting
obst-E 2008-08-15 Release 5.9 accounting
obst-E 2008-12-18 5.12 accounting

Clone Sequence Records

GH01453.complete Sequence

989 bp (989 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069031

> GH01453.complete
TTGGCTGAGCATCGCAGTAGCTCTTCCTTAGTTTAACTTTTAGTGATCAC
ATTGCCATTCGAAAACAACAAGAGGATTTAAACAAAATGGCTAAAATCTT
AATCAGTGCTCTATTGTGCGTTGCCATGTTTGGCTCAATGGCTGCCGCCG
CCGCCGGTGCATGCAAGGAGGCGAATGGAACTGCTCCCGTGTCCGGATCC
TGCGATGCCTACATTGAGTGCAAGAACGGAGTGGCCGAGGAGAAGCTCTG
CCCCGACGGTCTGCTGTACAACGAAAAGTCCACGGGTTACCCCTGCGGCT
ATCCGATCGACGTGGAGTGCACCCAGGGCCAGGCCCGCCTGCAGGCCGCT
CAGCCAACGGATGAGTGCCCCCACCAGTTCGGATACTATCGCATGGGTGA
TGCCAGCCATTGTGGACAGTTCATGAACTGCGCCGCGGGCCGTGGCTTCG
TGTTCGACTGCCCCGAGGGTCTGGCCTGGAATCCGGCCACCTACAAGTGC
GATTGGCCCGATCAGGTGGAGGACTGTGACGCCGAGGCCTTCCTGGGCTT
CCGCTGCCCAGCGCCGGCACCCAGATCTGAGCTGCTCGGCGAGCAGGAGG
CTGACTACACCTTCCACCCGTCGCAGGACAATTGCCAGGTGTACTTCATC
TGTATCGAGGGACGTCCGCGTCGCATTGGCTGCGGCGAGGACCAGGCTTT
CAACCAGGAGCTGAACCAGTGCGACGACATCGAGAACGTGCCCAACTGCA
GCAGTGCCATCCGTGAAAAGGGTGCCCAAATCAAGGCTGCTCGTCTTCAC
GCCAGGAAGAACTAAGTCAATCCAGTTGTGATTTTTCCCATGCACATGCC
ATATGGCGATAGGTTGCTCGAGTTTTCTAGTCTGTAGTTAAAGAATTTGG
CAAACTGATTGTTGACATTTTGCGCGTCGAAATAAAAAAAAAAAAGGAAA
AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH01453.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E.a 1957 obst-E.a 99..1056 1..958 4790 100 Plus
obst-E-RA 1146 obst-E-RA 194..1146 1..953 4765 100 Plus
obst-E-RB 1157 obst-E-RB 153..295 1..143 715 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5762534..5763346 953..141 3975 99.3 Minus
chr2L 23010047 chr2L 5765034..5765174 141..1 705 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:25:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5763455..5764272 958..141 4090 100 Minus
2L 23513712 2L 5765961..5766101 141..1 705 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5763455..5764272 958..141 4090 100 Minus
2L 23513712 2L 5765961..5766101 141..1 705 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:37:37 has no hits.

GH01453.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:38:42 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5762554..5763345 142..933 99 <- Minus
chr2L 5765034..5765174 1..141 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:03:43 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 1..729 87..815 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:27:07 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 1..729 87..815 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:27:20 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 1..729 87..815 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:54:34 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 1..729 87..815 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:21:40 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 1..729 87..815 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:03:49 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 41..973 1..933 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:27:07 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 41..973 1..933 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:20 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 42..974 1..933 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:54:34 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 41..973 1..933 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:21:40 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 42..974 1..933 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:42 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5763480..5764271 142..933 100 <- Minus
2L 5765961..5766101 1..141 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:42 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5763480..5764271 142..933 100 <- Minus
2L 5765961..5766101 1..141 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:42 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5763480..5764271 142..933 100 <- Minus
2L 5765961..5766101 1..141 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:20 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5763480..5764271 142..933 100 <- Minus
arm_2L 5765961..5766101 1..141 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:30:41 Download gff for GH01453.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5763480..5764271 142..933 100 <- Minus
2L 5765961..5766101 1..141 100   Minus

GH01453.pep Sequence

Translation from 86 to 814

> GH01453.pep
MAKILISALLCVAMFGSMAAAAAGACKEANGTAPVSGSCDAYIECKNGVA
EEKLCPDGLLYNEKSTGYPCGYPIDVECTQGQARLQAAQPTDECPHQFGY
YRMGDASHCGQFMNCAAGRGFVFDCPEGLAWNPATYKCDWPDQVEDCDAE
AFLGFRCPAPAPRSELLGEQEADYTFHPSQDNCQVYFICIEGRPRRIGCG
EDQAFNQELNQCDDIENVPNCSSAIREKGAQIKAARLHARKN*

GH01453.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14303-PA 242 GF14303-PA 1..242 1..242 1202 94.2 Plus
Dana\GF14304-PA 237 GF14304-PA 14..227 26..241 440 45.1 Plus
Dana\GF15739-PA 322 GF15739-PA 76..275 26..228 309 34.3 Plus
Dana\GF20239-PA 239 GF20239-PA 8..233 6..227 290 31.9 Plus
Dana\GF18629-PA 257 GF18629-PA 1..218 1..221 262 31.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24283-PA 250 GG24283-PA 1..239 1..236 515 47.3 Plus
Dere\GG10079-PA 333 GG10079-PA 86..285 26..228 315 34.3 Plus
Dere\GG19275-PA 237 GG19275-PA 8..231 6..227 290 31.4 Plus
Dere\GG10600-PA 258 GG10600-PA 1..218 1..221 258 31.4 Plus
Dere\GG19276-PA 230 GG19276-PA 1..219 1..216 249 31.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10689-PA 249 GH10689-PA 1..231 1..232 1098 87.1 Plus
Dgri\GH10690-PA 237 GH10690-PA 10..227 22..236 446 45.3 Plus
Dgri\GH12617-PA 235 GH12617-PA 2..230 3..227 316 31.9 Plus
Dgri\GH11070-PA 313 GH11070-PA 64..267 22..228 307 32.7 Plus
Dgri\GH12618-PA 230 GH12618-PA 1..219 1..216 258 31.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E-PA 242 CG11142-PA 1..242 1..242 1342 100 Plus
obst-E-PB 249 CG11142-PB 1..232 1..228 564 48.9 Plus
obst-B-PA 337 CG4778-PA 86..285 26..228 339 34.3 Plus
obst-A-PB 237 CG17052-PB 8..225 6..221 317 32.3 Plus
obst-A-PA 237 CG17052-PA 8..225 6..221 317 32.3 Plus
Gasp-PB 235 CG10287-PB 1..218 1..221 288 31.4 Plus
Gasp-PA 258 CG10287-PA 1..218 1..221 288 31.4 Plus
Peritrophin-A-PB 230 CG17058-PB 1..219 1..216 271 30.9 Plus
Peritrophin-A-PA 230 CG17058-PA 1..219 1..216 271 30.9 Plus
CG10725-PB 269 CG10725-PB 5..195 6..222 166 25.8 Plus
CG10140-PA 297 CG10140-PA 65..232 34..231 165 26.8 Plus
CG10154-PB 316 CG10154-PB 68..242 34..222 158 27.7 Plus
CG10154-PA 316 CG10154-PA 68..242 34..222 158 27.7 Plus
CG7248-PA 796 CG7248-PA 66..252 29..212 158 28.4 Plus
CG10725-PB 269 CG10725-PB 75..261 18..212 152 25.1 Plus
CG43896-PB 1324 CG43896-PB 167..340 38..217 152 26.1 Plus
CG43896-PD 2113 CG43896-PD 167..340 38..217 152 26.1 Plus
CG43896-PC 2113 CG43896-PC 167..340 38..217 152 26.1 Plus
CG10154-PB 316 CG10154-PB 143..308 38..212 147 24.7 Plus
CG10154-PA 316 CG10154-PA 143..308 38..212 147 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11215-PA 247 GI11215-PA 1..233 1..233 1156 91.8 Plus
Dmoj\GI11221-PA 233 GI11221-PA 1..229 5..236 459 44.2 Plus
Dmoj\GI17587-PA 316 GI17587-PA 68..267 26..228 316 34.3 Plus
Dmoj\GI11032-PA 247 GI11032-PA 8..231 6..227 289 31 Plus
Dmoj\GI11033-PA 230 GI11033-PA 1..219 1..216 261 31.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19116-PA 243 GL19116-PA 1..240 1..240 1152 90 Plus
Dper\GL19117-PA 227 GL19117-PA 10..223 26..236 445 46.1 Plus
Dper\GL18956-PA 316 GL18956-PA 74..273 26..228 320 33.8 Plus
Dper\GL13082-PA 238 GL13082-PA 8..232 6..227 293 30.6 Plus
Dper\GL23484-PA 259 GL23484-PA 1..218 1..221 262 31.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10790-PA 243 GA10790-PA 1..240 1..240 1139 89.2 Plus
Dpse\GA25356-PA 228 GA25356-PA 11..224 26..236 444 46.1 Plus
Dpse\GA18424-PA 316 GA18424-PA 74..273 26..228 320 33.8 Plus
Dpse\GA14300-PA 238 GA14300-PA 8..232 6..227 293 30.6 Plus
Dpse\GA10221-PA 259 GA10221-PA 1..218 1..221 262 31.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17998-PA 242 GM17998-PA 1..242 1..242 1280 99.2 Plus
Dsec\GM17883-PA 334 GM17883-PA 86..285 26..228 315 34.3 Plus
Dsec\GM10569-PA 258 GM10569-PA 1..218 1..221 260 31.4 Plus
Dsec\GM23015-PA 230 GM23015-PA 1..219 1..216 251 31.2 Plus
Dsec\GM23014-PA 226 GM23014-PA 8..220 6..227 222 29 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22632-PA 249 GD22632-PA 1..239 1..236 517 48.2 Plus
Dsim\GD23651-PA 334 GD23651-PA 86..285 26..228 315 34.3 Plus
Dsim\GD19561-PA 258 GD19561-PA 1..218 1..221 255 31 Plus
Dsim\GD17481-PA 230 GD17481-PA 1..219 1..216 250 31.2 Plus
Dsim\GD17480-PA 429 GD17480-PA 169..324 19..169 195 31.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18328-PA 247 GJ18328-PA 1..233 1..233 1152 90.6 Plus
Dvir\GJ18329-PA 242 GJ18329-PA 11..232 18..236 458 45.4 Plus
Dvir\GJ17929-PA 313 GJ17929-PA 65..267 23..228 317 33.3 Plus
Dvir\GJ15813-PA 237 GJ15813-PA 8..231 6..227 290 31.4 Plus
Dvir\GJ15814-PA 230 GJ15814-PA 1..219 1..216 256 30.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15420-PA 244 GK15420-PA 1..241 1..241 1155 90.9 Plus
Dwil\GK15421-PA 234 GK15421-PA 7..224 22..236 450 44.4 Plus
Dwil\GK12722-PA 309 GK12722-PA 64..263 26..228 317 34.3 Plus
Dwil\GK25193-PA 233 GK25193-PA 3..230 5..227 262 28.3 Plus
Dwil\GK14210-PA 256 GK14210-PA 1..218 1..221 252 31 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18979-PA 249 GE18979-PA 1..239 1..236 512 47.3 Plus
Dyak\GE18893-PA 334 GE18893-PA 86..285 26..228 310 34.3 Plus
Dyak\GE17864-PA 237 GE17864-PA 8..231 6..227 290 31.4 Plus
Dyak\GE24117-PA 258 GE24117-PA 1..218 1..221 257 31.4 Plus
Dyak\GE17865-PA 230 GE17865-PA 1..219 1..216 250 31.2 Plus

GH01453.hyp Sequence

Translation from 86 to 814

> GH01453.hyp
MAKILISALLCVAMFGSMAAAAAGACKEANGTAPVSGSCDAYIECKNGVA
EEKLCPDGLLYNEKSTGYPCGYPIDVECTQGQARLQAAQPTDECPHQFGY
YRMGDASHCGQFMNCAAGRGFVFDCPEGLAWNPATYKCDWPDQVEDCDAE
AFLGFRCPAPAPRSELLGEQEADYTFHPSQDNCQVYFICIEGRPRRIGCG
EDQAFNQELNQCDDIENVPNCSSAIREKGAQIKAARLHARKN*

GH01453.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E-PA 242 CG11142-PA 1..242 1..242 1342 100 Plus
obst-E-PB 249 CG11142-PB 1..232 1..228 564 48.9 Plus
obst-B-PA 337 CG4778-PA 86..285 26..228 339 34.3 Plus
obst-A-PB 237 CG17052-PB 8..225 6..221 317 32.3 Plus
obst-A-PA 237 CG17052-PA 8..225 6..221 317 32.3 Plus