Clone GH01464 Report

Search the DGRC for GH01464

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:14
Well:64
Vector:pOT2
Associated Gene/TranscriptSCOT-RA
Protein status:GH01464.pep: gold
Preliminary Size:1884
Sequenced Size:1775

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1140 2001-01-01 Release 2 assignment
CG1140 2001-09-19 Blastp of sequenced clone
CG1140 2003-01-01 Sim4 clustering to Release 3
CG1140 2008-04-29 Release 5.5 accounting
CG1140 2008-08-15 Release 5.9 accounting
CG1140 2008-12-18 5.12 accounting

Clone Sequence Records

GH01464.complete Sequence

1775 bp (1775 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058254

> GH01464.complete
ATTCTGGCTTGTGTTGATCCGCCGAGCAGTTTGCTTTAGTTTAAATACGT
TTTTATTACTTTAAATACACTTAAGTTAAAATGCTCTGCCGACTGGTGGG
AAACAGGAGTTTGGGTGCACGATATACCGCCTCCATCAAGGCTATTGCGT
GCTACTCCACGTCGGGAAAACAGCGGAACGGCAAGATCTACGAGTCGGCC
ATAGATGCTGTGGCCGATGTGCAGGATGGTGCCCAGATCCTGTTCGGCGG
ATTCGGAATCTGCGGCATTCCGGAGAAGATGATCAACGCGCTCAAGCAGA
AAGGAGTCAAGAACATCACTGGCGTTTCCAACAATGGAGGTGTGGACGAC
ACTGGTCTGGGTGTCCTGATCAAGCAGAAGCAGGTGTCCAAGGTAATTGG
CTCCTATGTCGGCGAAAACACGGAGTTGGTGCGTCAATATCTGGAAGGAG
AACTGGCCGTGGAACTGACTCCCCAAGGCACCCTAGCGGAAAAGATCCGC
GCTGGAGGAGCCGGCATTCCGGCCTTCTACACGCCCACTGGCTACGCCAC
TCTTGTCCAGGAAGGCGGAGCACCCATTAAGTACTCCAAGGATGGCAAAG
TGGAAATATCCAGCGAAAAGAAGCCCGTGAAGGAGTTCAACGGAAAGAAC
TACGTGATGGAGGAGTCCATCTTCGCAGACTTTGCCTTTGTCAAGGCCCA
GAAGGCCGATCCCTTGGGCAATCTGGTGTTCAACAAAGCTGCCAGAAACT
TCAATGCACCCATGTGCAGGGCTGCCAAAATCACCGTGGCCGAAGTGGAG
GAAATCGTGCCCATCGGAGCCCTTTCTCCCGATGAGATCCATGTGCCCGG
CATCTACATTAACCGCATCTTCAAGGGCACCAACTACAACAAGCGTGTGG
AACGCTTGCGCATCACGGAACCCAAGGATCCCAGCAAACCCGCTCCTCCA
CCAAATCCCGCCCAGGTTTTACGTGAGCGCATTGCCCGTCGAGTGGCTCT
TGAGTTCCACGACGGCATGTATGCCAATCTGGGCATTGGCATTCCCGTGC
TCTCCTCCAACTACATCCCCAAGGGCATGAACGTGATGCTGCAGTCGGAG
AACGGAATCCTGGGCCTGGGACCCTTCCCCACCAAGGATAAAGTGGATCC
GGACTTGATCAACGCCGGAAAGGAGAGTGTTACCGTGGTGCCCGGAGCCT
CATACTTTGGCTCCGATGACAGCTTTGCCATGATCCGTGGTGGTCATGTG
GATATCACCATTTTGGGCGCCATGGAGGTGTCGGCCACAGGCGATCTGGC
CAACTGGATGATTCCTGGCAAACTGGTTAAGGGAATGGGTGGAGCCATGG
ATTTGGTGGCTGCGCCTGGCACCAAGGTGATCATCACCATGGAGCACAAT
GCCCGCGATGGTTCCCCCAAGATCCTGGACACCTGCTCCCTTCCGCTCAC
TGGCAAGGGTGTGATCGACATGATCATCTCGGAGAAGGCTGTCTTCACGG
TGGAAAAGGGCGTGGGCCTAACGCTGATCGAGGTGGCCGAGGGTTACACC
GTGGACGACATCATTGCCAGCACTGGAGCCAAGTTCACAGTGTCGCCCAA
TCTGAAGAAAATGGGTCAAATTCCGGTCTGATGAGCCACGTGCTTAGTGC
CCAGAGAAGCTGCAATACCTCCGGTTGAGTGATAAACGAGTGCATTTATT
TTTTGTTGACCGTGTGACAAAAACATTTGTGTTAAATATATGGACCATAT
CAAATCGAAAAAAAAAAAAAAAAAA

GH01464.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1140-RA 1802 CG1140-RA 43..1801 1..1759 8795 100 Plus
CG1140.a 1704 CG1140.a 83..1703 139..1759 8105 100 Plus
CG1140-RB 1969 CG1140-RB 349..1968 140..1759 8100 100 Plus
CG1140.a 1704 CG1140.a 1..69 72..140 345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1964890..1965869 338..1317 4900 100 Plus
chr3L 24539361 chr3L 1965927..1966367 1317..1757 2205 100 Plus
chr3L 24539361 chr3L 1964635..1964837 139..341 1015 100 Plus
chr3L 24539361 chr3L 1964032..1964172 1..141 705 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:25:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1965328..1966307 338..1317 4900 100 Plus
3L 28110227 3L 1966365..1966807 1317..1759 2215 100 Plus
3L 28110227 3L 1965073..1965275 139..341 1015 100 Plus
3L 28110227 3L 1964470..1964610 1..141 705 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1965328..1966307 338..1317 4900 100 Plus
3L 28103327 3L 1966365..1966807 1317..1759 2215 100 Plus
3L 28103327 3L 1965073..1965275 139..341 1015 100 Plus
3L 28103327 3L 1964470..1964610 1..141 705 100 Plus
Blast to na_te.dros performed 2019-03-16 00:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2478..2521 848..891 121 75 Plus

GH01464.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:02:15 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1964032..1964171 1..140 100 -> Plus
chr3L 1964637..1964835 141..339 100 -> Plus
chr3L 1964892..1965868 340..1316 100 -> Plus
chr3L 1965927..1966367 1317..1757 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:03:44 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 1..1551 81..1631 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:49 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 1..1551 81..1631 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:47:28 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 1..1551 81..1631 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:44 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 1..1551 81..1631 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:54:58 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
SCOT-RA 1..1551 81..1631 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:02:06 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 1..1757 1..1757 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:49 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 1..1757 1..1757 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:47:28 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 12..1768 1..1757 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:44 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 1..1757 1..1757 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:54:58 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
SCOT-RA 12..1768 1..1757 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:15 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1964470..1964609 1..140 100 -> Plus
3L 1965075..1965273 141..339 100 -> Plus
3L 1965330..1966306 340..1316 100 -> Plus
3L 1966365..1966805 1317..1757 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:15 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1964470..1964609 1..140 100 -> Plus
3L 1965075..1965273 141..339 100 -> Plus
3L 1965330..1966306 340..1316 100 -> Plus
3L 1966365..1966805 1317..1757 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:15 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1964470..1964609 1..140 100 -> Plus
3L 1965075..1965273 141..339 100 -> Plus
3L 1965330..1966306 340..1316 100 -> Plus
3L 1966365..1966805 1317..1757 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:47:28 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1964470..1964609 1..140 100 -> Plus
arm_3L 1965075..1965273 141..339 100 -> Plus
arm_3L 1965330..1966306 340..1316 100 -> Plus
arm_3L 1966365..1966805 1317..1757 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:19:23 Download gff for GH01464.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1964470..1964609 1..140 100 -> Plus
3L 1965075..1965273 141..339 100 -> Plus
3L 1965330..1966306 340..1316 100 -> Plus
3L 1966365..1966805 1317..1757 100   Plus

GH01464.pep Sequence

Translation from 80 to 1630

> GH01464.pep
MLCRLVGNRSLGARYTASIKAIACYSTSGKQRNGKIYESAIDAVADVQDG
AQILFGGFGICGIPEKMINALKQKGVKNITGVSNNGGVDDTGLGVLIKQK
QVSKVIGSYVGENTELVRQYLEGELAVELTPQGTLAEKIRAGGAGIPAFY
TPTGYATLVQEGGAPIKYSKDGKVEISSEKKPVKEFNGKNYVMEESIFAD
FAFVKAQKADPLGNLVFNKAARNFNAPMCRAAKITVAEVEEIVPIGALSP
DEIHVPGIYINRIFKGTNYNKRVERLRITEPKDPSKPAPPPNPAQVLRER
IARRVALEFHDGMYANLGIGIPVLSSNYIPKGMNVMLQSENGILGLGPFP
TKDKVDPDLINAGKESVTVVPGASYFGSDDSFAMIRGGHVDITILGAMEV
SATGDLANWMIPGKLVKGMGGAMDLVAAPGTKVIITMEHNARDGSPKILD
TCSLPLTGKGVIDMIISEKAVFTVEKGVGLTLIEVAEGYTVDDIIASTGA
KFTVSPNLKKMGQIPV*

GH01464.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24850-PA 516 GF24850-PA 1..516 1..516 2403 91.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14840-PA 516 GG14840-PA 1..516 1..516 2645 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14994-PA 517 GH14994-PA 1..517 1..516 2342 85.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
SCOT-PA 516 CG1140-PA 1..516 1..516 2635 100 Plus
SCOT-PB 502 CG1140-PB 5..502 19..516 2536 99.6 Plus
SCOT-PC 450 CG1140-PC 1..450 67..516 2296 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13155-PA 514 GI13155-PA 1..514 1..516 2322 86.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22911-PA 516 GL22911-PA 1..516 1..516 2500 91.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10977-PA 516 GA10977-PA 1..516 1..516 2495 91.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14463-PA 516 GM14463-PA 1..516 1..516 2676 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13661-PA 516 GD13661-PA 1..516 1..516 2671 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11929-PA 515 GJ11929-PA 1..515 1..516 2355 85.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12531-PA 514 GK12531-PA 1..514 1..516 2354 87 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21204-PA 516 GE21204-PA 1..516 1..516 2646 97.9 Plus

GH01464.hyp Sequence

Translation from 80 to 1630

> GH01464.hyp
MLCRLVGNRSLGARYTASIKAIACYSTSGKQRNGKIYESAIDAVADVQDG
AQILFGGFGICGIPEKMINALKQKGVKNITGVSNNGGVDDTGLGVLIKQK
QVSKVIGSYVGENTELVRQYLEGELAVELTPQGTLAEKIRAGGAGIPAFY
TPTGYATLVQEGGAPIKYSKDGKVEISSEKKPVKEFNGKNYVMEESIFAD
FAFVKAQKADPLGNLVFNKAARNFNAPMCRAAKITVAEVEEIVPIGALSP
DEIHVPGIYINRIFKGTNYNKRVERLRITEPKDPSKPAPPPNPAQVLRER
IARRVALEFHDGMYANLGIGIPVLSSNYIPKGMNVMLQSENGILGLGPFP
TKDKVDPDLINAGKESVTVVPGASYFGSDDSFAMIRGGHVDITILGAMEV
SATGDLANWMIPGKLVKGMGGAMDLVAAPGTKVIITMEHNARDGSPKILD
TCSLPLTGKGVIDMIISEKAVFTVEKGVGLTLIEVAEGYTVDDIIASTGA
KFTVSPNLKKMGQIPV*

GH01464.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
SCOT-PA 516 CG1140-PA 1..516 1..516 2635 100 Plus
SCOT-PB 502 CG1140-PB 5..502 19..516 2536 99.6 Plus
SCOT-PC 450 CG1140-PC 1..450 67..516 2296 100 Plus