Clone GH01474 Report

Search the DGRC for GH01474

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:14
Well:74
Vector:pOT2
Associated Gene/TranscriptCG1486-RA
Protein status:GH01474.pep: gold
Preliminary Size:3288
Sequenced Size:3392

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1486 2001-01-01 Release 2 assignment
CG1486 2001-11-29 Blastp of sequenced clone
CG1486 2003-01-01 Sim4 clustering to Release 3
CG1486 2008-04-29 Release 5.5 accounting
CG1486 2008-08-15 Release 5.9 accounting
CG1486 2008-12-18 5.12 accounting

Clone Sequence Records

GH01474.complete Sequence

3392 bp (3392 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069032

> GH01474.complete
ACGAAACGAAAACAATTATTTTGCATCGCAGGCGATAAGTTAAAAGTGAT
TTAGACCGCACTGAAACCATGTCAGCGGCTGGTAGATCGGTGGACGATCC
CGGCCAGAGCCCACTCGTAGACCAAGAGCCGGATCCGGGCCAATCAACGC
CAGCGGTGGCCGAAATCGCCGCTTCCAGTATTCGATCGGGCCTGGCGGAG
CTGGAGCTGCGATCTTCGCAGGTGCTGCAGCGCTTAGAGAACGTTAAGGT
GTCGACCACGCCGGAGAGCCCAAATCCCGTCGAGAACGAGGAAGAGGCTG
GGGAGCGGGTGACCAGCGAGGACCTCCTGCCAGCGAAGCATCGCGTGCCC
TCCGACATTCTTAAGTCGCTGGAGCAATTGGTTTCTTACACGGACAGCGA
CGATGATCCGGAGTTCCCGCTGCCCGCCCTGGATGACGTCTCCCACTTGG
CTCTCATATCGCACAGCATTGTGGCCTATTTGTCGCATCTGGACCGTCAG
CAACTGCTCCGGGTGACGAACAGCATTTCCGGGGACGCCACCCGCTGGTT
GGGCACGCTGTTTCACTTTGCCCACCCGGCGAGCAGCTTCCATGCGGACA
ATGCAGACGCGGTGCTGCGTACGGTGCGACTGGCCATCGTCGCCAGGTGT
CCGGGGTACTTGGAGGGTGGCATACCCGCCCTGGCGCAGCCTACGTTTTA
CATCTCGGAGAATACGACGCCGATGAGGCTGCACTACGCATGCCGCCAGT
TGGGCATACCGCTGGAGGCTATTAAGGTCATTCCGGAGCACAGTCAGTCC
GGGACAATGGATGTGACGCTGCTGCAAAAGCAAATTCAGCAGGATGTGGG
CAATAACAGGACTCCGCTGCTGGTGGTCGCCGACATTGGAGCCTCGTTGT
GTGGCTATGTGGACAACCTGCTCCGGCTGAGGGACGTATGCAAGGCGCAC
AACATGTGGCTGCACGCCAGTGGCCACGGACTGGCCGCCTTGGTGTGCGC
CCAAAATCAGGGCCATGTGGAGGAGGTACTCCACTCGATGGCCCTGAATT
TGGGCAGCTGGCTGGGTGTGCCCAGTCTGCCCATCGTCCTGCTGCACCGT
CCGCTGCAGAACAGCGCTCTGAGTGCCTTCGAATCCGATCCCATACTGTC
GCGTCGTCTTAATGCCCTGTCCTTGTGGACCAGTTTGCAGGCGCTGGGCC
GGAAGGCGATTGCGGAGCGTCTGCATGTGGCCTTCCAGACGTGCAGTATT
CTCTTCGAGATTGCCTCCAAGTGTGAGGGCATCCGGGTGTTGAGCCATAC
TCCAGGAGCGCAGACCGGAGCCTCTTTGTCGGACGTCATTCAGAGCCCCT
TTGATGTGCAGGCGCTTTTTGATGCCGCCGCCCCCGTGGTCGCCTATCAG
TTCGACGGCAGCACCACCATTCCACTGGGCGGGAGTGGCTCTTCCGCCGC
CGCTGCCGCTGCTGAGCGGGAAACGGCCGAAGGCCTCAAGCCGCTAGAGA
AGATTAACAATGCTTCCTACTTCGACCGGCTCAACTCCTGGCTGGGTCAA
ATCTTGCAACGCGACTGTCCCAATTTTGACTTTGAGGTAATTGAACACCC
GACGCACGGCAGCTGCATTCGCTACTGTCCGCTGGAATTGGGGTTGGGTG
AGCAGCCGCCAAGCTCCGAGAACCTGGAGAGCTTCGCTCAGAGCTTAGAG
GCACATGTGGACATCCTGCGCGCGACCATCAAGCACAAGGCACGGTTCAT
TCATCTGGTGGAGTGCAGCGACGTGCTGCGCCTCGTTCCACTGCCCGAAT
GGGCGGGCATGGGCGGTGTTCGCTTCGTGCCCGAGGGCTGGGAGTCCCTG
CTGACGGACCAGGCCAAAACAGAGCTAAACAAGCTGAACATCGACCTGGT
GGAGGCCCTGAAATCCACGGACAATGCCTTTTCATTAGGCGAAGGCACCG
ATGGTCTGATTTGTGTGCGATTCGGAATGGTGACCCATGAAACGGAGGTC
GAAGAGTTGTTAGACTTGGTGGTCACGGTGGGCAAGAGCGTCCAGGAAAA
CTCGCGGGTATTGGACACCATGTCGGAGATTGTTAAAAAGGGCATTGAGG
CGGTTACCGCTGATCTGCAGCGCGAATCGGAGGAGAAGCTCTGGCAGGAG
GGCATCCTGCGCCACGTGCCTGTGGTGGGACGCGTCTTCAACTGGTGGTC
CCCACCGGCCAAGGAGTCGGGCATCAAGGGGCGGAGCCTCAATCTTACCC
AAGGTGTTGTCGAAAGCACCGAGAACATTTACAAGTACCACATGCAGATG
ACCGGAGCCACTGCTCATCAGTTGCCAGCGAATCGTTCGCCTCCCACACC
CATGGTGCAGACGCCCGTGGTCGCGCCTGCCTTGCCGCCCGTCTTTCCCA
CGGTGGAGCCCGTACCCGGAAATGGAAACGGATCCGGAGCGAGCGAGGGC
ACGCCAGTGCAGTCGGGAGAAGCTTCGGGATCGATGCCAGCAGCCTCGGG
AGCGGCTCCGTCTGCGGCGCCGACCCAAAACCATGTGGATCATGCCCGCA
CCGTCAGTCAGAGCAGTGCCGCCTCGTCCACCGTTCCGGAGTTAGTGGCC
GCCAGCAGTGCAATTAACAATAACTAACAATAACACAAGTACGAGTATAT
TTCAAAATTAACTATAACTGAACGGCAGAGGAAAACACTTAGATCAAGGC
AGAGCCAGCAATATGGATTCCACAGTGGGAGAGGCCTTAAAACGCAGCAA
TATCAAACAAGGCTTGAACTGAACAGAAACGCGTAGACAAAAACTGGACA
GATTACCATATATATGGACGGCTTCATTTCCACTTTCCCTACTTAAACGA
AAAGAATTCCAAAGAGGATGATTGTTCGCCCGAAAAGATGAAAAGATGAT
GATGATATGATCCAATTGAATTGCTTTTATGTATTTATATGTATATGGCT
ATTTCTATGATCTTTTATATATCTCCATTATATATTATATTATTTTACCT
TATACTTTACTCCCACCATTATTGTTGATTATGATCAGAGGGAAATGTGC
GTAACTTCGTCCTCTTTACGCTTTTATTTTTTTGTTTTTATAATTATTCA
GATGCAAGTACCTTTGAGAGACATAATATATATACATTTATATATATATA
GGCAATTCTTCAATGTTCAATTGTGCGAAGCAATAAATTGCGCTATTCTT
ATTCGTTAAGCTAAGTGACAGTAAACTAAAGAAATTAAAGAAAACGCGGA
GAAAGAAAATAATTAAATGACAAAAATATATTTATTATACAAAAATTGCT
GCTATAAGAAAATATCTGCACAAAATATGATAAAAGGAAACTATACAAAA
TAAAATGTGAAATCATTTAGAAAGAAAAAAAAAAAAAAAAAA

GH01474.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1486-RA 3634 CG1486-RA 262..3634 1..3373 16865 100 Plus
CG1486-RB 3697 CG1486-RB 325..3697 1..3373 16865 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21189867..21190979 180..1292 5565 100 Plus
chrX 22417052 chrX 21192218..21193307 2285..3374 5450 100 Plus
chrX 22417052 chrX 21191385..21191901 1575..2091 2585 100 Plus
chrX 22417052 chrX 21191045..21191327 1292..1574 1415 100 Plus
chrX 22417052 chrX 21191958..21192155 2089..2286 990 100 Plus
chrX 22417052 chrX 21189550..21189728 1..179 895 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:25:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21324710..21325822 180..1292 5565 100 Plus
X 23542271 X 21327061..21328155 2285..3379 5460 99.9 Plus
X 23542271 X 21326228..21326744 1575..2091 2585 100 Plus
X 23542271 X 21325888..21326170 1292..1574 1415 100 Plus
X 23542271 X 21326801..21326998 2089..2286 990 100 Plus
X 23542271 X 21324393..21324571 1..179 895 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21309802..21310914 180..1292 5565 100 Plus
X 23527363 X 21312153..21313247 2285..3379 5460 99.9 Plus
X 23527363 X 21311320..21311836 1575..2091 2585 100 Plus
X 23527363 X 21310980..21311262 1292..1574 1415 100 Plus
X 23527363 X 21311893..21312090 2089..2286 990 100 Plus
X 23527363 X 21309485..21309663 1..179 895 100 Plus
Blast to na_te.dros performed 2019-03-15 19:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 939..1163 3134..3365 132 57.4 Plus
TAHRE 10463 TAHRE OSV 10463bp 7684..7881 2616..2813 117 54.7 Plus

GH01474.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:09:22 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21189550..21189728 1..179 100 -> Plus
chrX 21189867..21190979 180..1292 100 -> Plus
chrX 21191046..21191327 1293..1574 100 -> Plus
chrX 21191385..21191900 1575..2090 100 -> Plus
chrX 21191960..21192153 2091..2284 100 -> Plus
chrX 21192218..21193307 2285..3374 91   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:03:46 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RB 1..2559 69..2627 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:26:27 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RB 1..2559 69..2627 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:43:14 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RA 1..2559 69..2627 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:53:51 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RB 1..2559 69..2627 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:13 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RA 1..2559 69..2627 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:02:52 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RB 325..3697 1..3373 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:26:27 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RB 325..3697 1..3373 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:43:14 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RA 261..3634 1..3374 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:53:51 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RB 325..3697 1..3373 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:13 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG1486-RA 261..3634 1..3374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:22 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
X 21324393..21324571 1..179 100 -> Plus
X 21324710..21325822 180..1292 100 -> Plus
X 21325889..21326170 1293..1574 100 -> Plus
X 21326228..21326743 1575..2090 100 -> Plus
X 21326803..21326996 2091..2284 100 -> Plus
X 21327061..21328150 2285..3374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:22 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
X 21324393..21324571 1..179 100 -> Plus
X 21324710..21325822 180..1292 100 -> Plus
X 21325889..21326170 1293..1574 100 -> Plus
X 21326228..21326743 1575..2090 100 -> Plus
X 21326803..21326996 2091..2284 100 -> Plus
X 21327061..21328150 2285..3374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:22 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
X 21324393..21324571 1..179 100 -> Plus
X 21324710..21325822 180..1292 100 -> Plus
X 21325889..21326170 1293..1574 100 -> Plus
X 21326228..21326743 1575..2090 100 -> Plus
X 21326803..21326996 2091..2284 100 -> Plus
X 21327061..21328150 2285..3374 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:43:14 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21197830..21198023 2091..2284 100 -> Plus
arm_X 21195420..21195598 1..179 100 -> Plus
arm_X 21195737..21196849 180..1292 100 -> Plus
arm_X 21196916..21197197 1293..1574 100 -> Plus
arm_X 21197255..21197770 1575..2090 100 -> Plus
arm_X 21198088..21199177 2285..3374 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:29:56 Download gff for GH01474.complete
Subject Subject Range Query Range Percent Splice Strand
X 21309802..21310914 180..1292 100 -> Plus
X 21310981..21311262 1293..1574 100 -> Plus
X 21311320..21311835 1575..2090 100 -> Plus
X 21311895..21312088 2091..2284 100 -> Plus
X 21312153..21313242 2285..3374 100   Plus
X 21309485..21309663 1..179 100 -> Plus

GH01474.pep Sequence

Translation from 68 to 2626

> GH01474.pep
MSAAGRSVDDPGQSPLVDQEPDPGQSTPAVAEIAASSIRSGLAELELRSS
QVLQRLENVKVSTTPESPNPVENEEEAGERVTSEDLLPAKHRVPSDILKS
LEQLVSYTDSDDDPEFPLPALDDVSHLALISHSIVAYLSHLDRQQLLRVT
NSISGDATRWLGTLFHFAHPASSFHADNADAVLRTVRLAIVARCPGYLEG
GIPALAQPTFYISENTTPMRLHYACRQLGIPLEAIKVIPEHSQSGTMDVT
LLQKQIQQDVGNNRTPLLVVADIGASLCGYVDNLLRLRDVCKAHNMWLHA
SGHGLAALVCAQNQGHVEEVLHSMALNLGSWLGVPSLPIVLLHRPLQNSA
LSAFESDPILSRRLNALSLWTSLQALGRKAIAERLHVAFQTCSILFEIAS
KCEGIRVLSHTPGAQTGASLSDVIQSPFDVQALFDAAAPVVAYQFDGSTT
IPLGGSGSSAAAAAAERETAEGLKPLEKINNASYFDRLNSWLGQILQRDC
PNFDFEVIEHPTHGSCIRYCPLELGLGEQPPSSENLESFAQSLEAHVDIL
RATIKHKARFIHLVECSDVLRLVPLPEWAGMGGVRFVPEGWESLLTDQAK
TELNKLNIDLVEALKSTDNAFSLGEGTDGLICVRFGMVTHETEVEELLDL
VVTVGKSVQENSRVLDTMSEIVKKGIEAVTADLQRESEEKLWQEGILRHV
PVVGRVFNWWSPPAKESGIKGRSLNLTQGVVESTENIYKYHMQMTGATAH
QLPANRSPPTPMVQTPVVAPALPPVFPTVEPVPGNGNGSGASEGTPVQSG
EASGSMPAASGAAPSAAPTQNHVDHARTVSQSSAASSTVPELVAASSAIN
NN*

GH01474.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22496-PA 854 GF22496-PA 1..854 1..852 3886 87.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19720-PA 853 GG19720-PA 1..853 1..852 4347 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12364-PA 888 GH12364-PA 38..870 30..852 3474 81 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1486-PB 852 CG1486-PB 1..852 1..852 4370 100 Plus
CG1486-PA 852 CG1486-PA 1..852 1..852 4370 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14740-PA 901 GI14740-PA 73..901 30..852 3601 83.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19817-PA 858 GL19817-PA 1..858 1..852 3586 82.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13300-PA 853 GA13300-PA 32..853 38..852 3598 85.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23075-PA 634 GM23075-PA 1..634 219..852 3300 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24887-PA 832 GD24887-PA 1..832 1..852 4270 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19148-PA 882 GJ19148-PA 67..881 30..850 3555 84.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19941-PA 841 GK19941-PA 1..841 1..852 3517 81.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17918-PA 855 GE17918-PA 1..855 1..852 4328 96.5 Plus

GH01474.hyp Sequence

Translation from 68 to 2626

> GH01474.hyp
MSAAGRSVDDPGQSPLVDQEPDPGQSTPAVAEIAASSIRSGLAELELRSS
QVLQRLENVKVSTTPESPNPVENEEEAGERVTSEDLLPAKHRVPSDILKS
LEQLVSYTDSDDDPEFPLPALDDVSHLALISHSIVAYLSHLDRQQLLRVT
NSISGDATRWLGTLFHFAHPASSFHADNADAVLRTVRLAIVARCPGYLEG
GIPALAQPTFYISENTTPMRLHYACRQLGIPLEAIKVIPEHSQSGTMDVT
LLQKQIQQDVGNNRTPLLVVADIGASLCGYVDNLLRLRDVCKAHNMWLHA
SGHGLAALVCAQNQGHVEEVLHSMALNLGSWLGVPSLPIVLLHRPLQNSA
LSAFESDPILSRRLNALSLWTSLQALGRKAIAERLHVAFQTCSILFEIAS
KCEGIRVLSHTPGAQTGASLSDVIQSPFDVQALFDAAAPVVAYQFDGSTT
IPLGGSGSSAAAAAAERETAEGLKPLEKINNASYFDRLNSWLGQILQRDC
PNFDFEVIEHPTHGSCIRYCPLELGLGEQPPSSENLESFAQSLEAHVDIL
RATIKHKARFIHLVECSDVLRLVPLPEWAGMGGVRFVPEGWESLLTDQAK
TELNKLNIDLVEALKSTDNAFSLGEGTDGLICVRFGMVTHETEVEELLDL
VVTVGKSVQENSRVLDTMSEIVKKGIEAVTADLQRESEEKLWQEGILRHV
PVVGRVFNWWSPPAKESGIKGRSLNLTQGVVESTENIYKYHMQMTGATAH
QLPANRSPPTPMVQTPVVAPALPPVFPTVEPVPGNGNGSGASEGTPVQSG
EASGSMPAASGAAPSAAPTQNHVDHARTVSQSSAASSTVPELVAASSAIN
NN*

GH01474.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1486-PB 852 CG1486-PB 1..852 1..852 4370 100 Plus
CG1486-PA 852 CG1486-PA 1..852 1..852 4370 100 Plus