Clone GH01515 Report

Search the DGRC for GH01515

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:15
Well:15
Vector:pOT2
Associated Gene/TranscriptTMS1-RA
Protein status:GH01515.pep: gold
Preliminary Size:2016
Sequenced Size:1733

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4672 2001-01-01 Release 2 assignment
CG4672 2001-09-19 Blastp of sequenced clone
CG4672 2003-01-01 Sim4 clustering to Release 3
TMS1 2008-04-29 Release 5.5 accounting
TMS1 2008-08-15 Release 5.9 accounting
TMS1 2008-12-18 5.12 accounting

Clone Sequence Records

GH01515.complete Sequence

1733 bp (1733 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058257

> GH01515.complete
CATCTCTATCATTTTCACAAACAAAGATTTGTTTAATTTAATAAAAACGC
AGTTTGACTAAAGTAAAAATCTAAGTTTATTGCTGCAACAATGGGAGCTG
CTTTGGGCATCTGTTCAGCCGCTCAGTGCGCCATGTGCTGTGGAGGCACT
GCAGCCAGCATGTGCTGCTCCGCCTGCCCGAGCTGCACCAACGCCTCCTC
ATCGCGCTTCATGTACGCCTTCATCCTCCTGGTGGGCACCGTACTGGGGG
CGATTGCGCTGTCCCCTGGACTGCAGGACACCCTGAAGAAGATGCCCTTC
TGCATCAACTCCACCTCGTCGTATAGCTCGGGAGCACTCAGCGCTGTCTC
GGGAGGATCTCTGCAAGTCGACTGCGAGTATGCACTTGGTTACATGGCAG
TATATAGGGTTTGCTTTGGCATGGCCTGCTTTTTCGCTCTGATGTCACTG
ATTATGCTGGGTGTGAAGAGCTCCAGGGATCCGCGTTCGCACATCCAGAA
CAACTTTTGGCCACTGAAATTTCTGATCTGCTTTGGCGCTGCGATTGGAG
CCATCTTTATTCCGGATGGATCCTTTGGTCCGGCCATGATGTGGGTGGGT
CTAATTGGTGGCCTGGCCTTCATACTCGTCCAGCTGGTCATCATTGTGGA
TTTCGCTCACTCGCTGGCTGAAAACTGGATAGAAAGCGCCGAAAACAGTC
GTGGATACTACTATGCCCTCGCTGGGGTCACTCTTTTGTGCTATATCTTA
TCGCTGACTGGAATTACCTTGCTTTATATCTACTTCACCACCAGTACTGG
CTGCGGCATCAACAAGTTCTTCATCTCCATCAATCTCATATTCTGTCTGG
CGATTAGCGTCATTTCGATTCTGCCAGCTGTGCAGGAACGCTTGCCCCAT
TCTGGCCTACTGCAGAGCTCCCTGGTTACCTTGTACACGGTGTATCTAAC
CTGGTCGGCAGTGGCCAACAATCCTGAGAAAGAATGCAATCCAGGCATGT
TTGGCATGATGGAGGGATTCGGCAATGCAACCACCACGGCAGCACCGCCC
ACCCACACCACCAGGGTCACCTTCGATACGACCAACATCATCGGACTGGT
CGTCTGGTTGCTGTGCATCCTGTACAATTGCATTAGCTCGGCGGTGGAGG
TATCCAAGATCTCGCACGATAATAGCGAGAAGCGTGTTTTAACAGAAGCT
CTATCAGACACAGAGGCGGGCACGGATGGCAGCGGAAAGCCGAGCACCGA
CACCGAGACCGAAGGCGTCACCTACTCCTGGTCCATGTTCCACTTGGTCT
TCGTCTGCGCCTCGCTCTATGTCATGATGACCCTGACCAACTGGTACAAA
CCTCATTCGGAAATCGAGCTGTTCAACGGCAACGAGGCTTCCATGTGGGT
CAAGATCGTCTCCAGTTGGCTGGGTGTCTTCATCTATGGCTGGAGCCTTG
CAGCGCCCATTGTTCTTACCAATCGCGACTTTAGCTAAGCGATTTTAGTA
TATTAACGTCTAGGAATGGTGCTTAAACGAGCAAAACGAGAATGCCAAAA
CGGAACGCGGAGAGGAAATAGTATCCGAAACTGATGCAGATTAACCATAC
ACAATTTTGACTCTACATGTGGTGTCTACTCATTGATCTTATTCTCAAAT
TGCAAAAGTTATCAATATATAAATTAATCTATTATATATACATACAAATA
CAACAGAACTTAACCAAAAAAAAAAAAAAAAAA

GH01515.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
TMS1-RA 1849 TMS1-RA 62..1779 1..1718 8590 100 Plus
TMS1.g 1778 TMS1.g 185..1778 124..1717 7970 100 Plus
TMS1.d 1840 TMS1.d 62..1247 1..1186 5930 100 Plus
TMS1.d 1840 TMS1.d 1247..1770 1195..1718 2620 100 Plus
TMS1.g 1778 TMS1.g 34..159 1..126 630 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16403026..16403584 124..682 2750 99.5 Plus
chr3L 24539361 chr3L 16404796..16405165 1346..1715 1835 99.7 Plus
chr3L 24539361 chr3L 16404062..16404272 976..1186 1040 99.5 Plus
chr3L 24539361 chr3L 16403819..16404002 793..976 905 99.5 Plus
chr3L 24539361 chr3L 16404572..16404735 1186..1349 820 100 Plus
chr3L 24539361 chr3L 16402536..16402661 1..126 630 100 Plus
chr3L 24539361 chr3L 16403648..16403759 681..792 560 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16413245..16413803 124..682 2795 100 Plus
3L 28110227 3L 16415017..16415389 1346..1718 1850 99.7 Plus
3L 28110227 3L 16414283..16414493 976..1186 1055 100 Plus
3L 28110227 3L 16414038..16414221 793..976 920 100 Plus
3L 28110227 3L 16414793..16414956 1186..1349 820 100 Plus
3L 28110227 3L 16412755..16412880 1..126 630 100 Plus
3L 28110227 3L 16413867..16413978 681..792 560 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16406345..16406903 124..682 2795 100 Plus
3L 28103327 3L 16408117..16408489 1346..1718 1850 99.7 Plus
3L 28103327 3L 16407383..16407593 976..1186 1055 100 Plus
3L 28103327 3L 16407138..16407321 793..976 920 100 Plus
3L 28103327 3L 16407893..16408056 1186..1349 820 100 Plus
3L 28103327 3L 16405855..16405980 1..126 630 100 Plus
3L 28103327 3L 16406967..16407078 681..792 560 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:52:52 has no hits.

GH01515.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:53:34 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16402536..16402661 1..126 100 -> Plus
chr3L 16403029..16403584 127..682 99 -> Plus
chr3L 16403650..16403759 683..792 100 -> Plus
chr3L 16403819..16404002 793..976 99 -> Plus
chr3L 16404063..16404272 977..1186 99 -> Plus
chr3L 16404573..16404735 1187..1349 100 -> Plus
chr3L 16404800..16405165 1350..1715 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:03:58 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 1..1398 91..1488 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:42 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 1..1398 91..1488 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:28:24 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 1..1398 91..1488 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:36 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 1..1398 91..1488 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:24:45 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 1..1398 91..1488 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:01:56 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 1..1715 1..1715 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:42 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 1..1715 1..1715 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:24 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 34..1748 1..1715 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:36 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 1..1715 1..1715 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:24:45 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 34..1748 1..1715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:53:34 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16414794..16414956 1187..1349 100 -> Plus
3L 16412755..16412880 1..126 100 -> Plus
3L 16413248..16413803 127..682 100 -> Plus
3L 16413869..16413978 683..792 100 -> Plus
3L 16414038..16414221 793..976 100 -> Plus
3L 16414284..16414493 977..1186 100 -> Plus
3L 16415021..16415386 1350..1715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:53:34 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16414794..16414956 1187..1349 100 -> Plus
3L 16412755..16412880 1..126 100 -> Plus
3L 16413248..16413803 127..682 100 -> Plus
3L 16413869..16413978 683..792 100 -> Plus
3L 16414038..16414221 793..976 100 -> Plus
3L 16414284..16414493 977..1186 100 -> Plus
3L 16415021..16415386 1350..1715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:53:34 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16414794..16414956 1187..1349 100 -> Plus
3L 16412755..16412880 1..126 100 -> Plus
3L 16413248..16413803 127..682 100 -> Plus
3L 16413869..16413978 683..792 100 -> Plus
3L 16414038..16414221 793..976 100 -> Plus
3L 16414284..16414493 977..1186 100 -> Plus
3L 16415021..16415386 1350..1715 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:24 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16407384..16407593 977..1186 100 -> Plus
arm_3L 16407894..16408056 1187..1349 100 -> Plus
arm_3L 16407138..16407321 793..976 100 -> Plus
arm_3L 16405855..16405980 1..126 100 -> Plus
arm_3L 16406348..16406903 127..682 100 -> Plus
arm_3L 16406969..16407078 683..792 100 -> Plus
arm_3L 16408121..16408486 1350..1715 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:19:15 Download gff for GH01515.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16405855..16405980 1..126 100 -> Plus
3L 16406348..16406903 127..682 100 -> Plus
3L 16406969..16407078 683..792 100 -> Plus
3L 16407138..16407321 793..976 100 -> Plus
3L 16407384..16407593 977..1186 100 -> Plus
3L 16407894..16408056 1187..1349 100 -> Plus
3L 16408121..16408486 1350..1715 100   Plus

GH01515.pep Sequence

Translation from 90 to 1487

> GH01515.pep
MGAALGICSAAQCAMCCGGTAASMCCSACPSCTNASSSRFMYAFILLVGT
VLGAIALSPGLQDTLKKMPFCINSTSSYSSGALSAVSGGSLQVDCEYALG
YMAVYRVCFGMACFFALMSLIMLGVKSSRDPRSHIQNNFWPLKFLICFGA
AIGAIFIPDGSFGPAMMWVGLIGGLAFILVQLVIIVDFAHSLAENWIESA
ENSRGYYYALAGVTLLCYILSLTGITLLYIYFTTSTGCGINKFFISINLI
FCLAISVISILPAVQERLPHSGLLQSSLVTLYTVYLTWSAVANNPEKECN
PGMFGMMEGFGNATTTAAPPTHTTRVTFDTTNIIGLVVWLLCILYNCISS
AVEVSKISHDNSEKRVLTEALSDTEAGTDGSGKPSTDTETEGVTYSWSMF
HLVFVCASLYVMMTLTNWYKPHSEIELFNGNEASMWVKIVSSWLGVFIYG
WSLAAPIVLTNRDFS*

GH01515.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24277-PA 465 GF24277-PA 1..465 1..465 2214 88.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16004-PA 465 GG16004-PA 1..465 1..465 2416 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15892-PA 465 GH15892-PA 1..465 1..465 2083 84.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
TMS1-PA 465 CG4672-PA 1..465 1..465 2441 100 Plus
TMS1-PB 462 CG4672-PB 1..462 1..465 2414 99.4 Plus
TMS1-PD 461 CG4672-PD 1..461 1..465 2408 99.1 Plus
TMS1-PC 458 CG4672-PC 1..458 1..465 2393 98.5 Plus
TMS1-PE 456 CG4672-PE 1..456 1..465 2380 98.1 Plus
TMS1-PF 467 CG4672-PF 1..430 1..433 2169 96.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16544-PA 464 GI16544-PA 1..464 1..465 2094 83.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17862-PA 469 GL17862-PA 1..469 1..465 2244 90.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28520-PA 403 GA28520-PA 169..403 235..465 1085 88.1 Plus
Dpse\GA28520-PA 403 GA28520-PA 1..168 1..168 847 93.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25636-PA 463 GM25636-PA 1..463 1..465 2413 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14640-PA 463 GD14640-PA 1..463 1..465 2282 94 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12796-PA 465 GJ12796-PA 1..465 1..465 2082 84.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16715-PA 470 GK16715-PA 1..470 1..465 2108 84.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23013-PA 437 GE23013-PA 1..437 1..465 2233 92.5 Plus
Dyak\GE19566-PA 404 GE19566-PA 1..404 1..465 1877 82.4 Plus

GH01515.hyp Sequence

Translation from 90 to 1487

> GH01515.hyp
MGAALGICSAAQCAMCCGGTAASMCCSACPSCTNASSSRFMYAFILLVGT
VLGAIALSPGLQDTLKKMPFCINSTSSYSSGALSAVSGGSLQVDCEYALG
YMAVYRVCFGMACFFALMSLIMLGVKSSRDPRSHIQNNFWPLKFLICFGA
AIGAIFIPDGSFGPAMMWVGLIGGLAFILVQLVIIVDFAHSLAENWIESA
ENSRGYYYALAGVTLLCYILSLTGITLLYIYFTTSTGCGINKFFISINLI
FCLAISVISILPAVQERLPHSGLLQSSLVTLYTVYLTWSAVANNPEKECN
PGMFGMMEGFGNATTTAAPPTHTTRVTFDTTNIIGLVVWLLCILYNCISS
AVEVSKISHDNSEKRVLTEALSDTEAGTDGSGKPSTDTETEGVTYSWSMF
HLVFVCASLYVMMTLTNWYKPHSEIELFNGNEASMWVKIVSSWLGVFIYG
WSLAAPIVLTNRDFS*

GH01515.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
TMS1-PA 465 CG4672-PA 1..465 1..465 2441 100 Plus
TMS1-PB 462 CG4672-PB 1..462 1..465 2414 99.4 Plus
TMS1-PD 461 CG4672-PD 1..461 1..465 2408 99.1 Plus
TMS1-PC 458 CG4672-PC 1..458 1..465 2393 98.5 Plus
TMS1-PE 456 CG4672-PE 1..456 1..465 2380 98.1 Plus