Clone GH01524 Report

Search the DGRC for GH01524

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:15
Well:24
Vector:pOT2
Associated Gene/TranscriptIdh-RB
Protein status:GH01524.pep: gold
Preliminary Size:2008
Sequenced Size:2050

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7176 2001-01-01 Release 2 assignment
CG7176 2001-07-04 Blastp of sequenced clone
CG7176 2003-01-01 Sim4 clustering to Release 3
Idh 2008-04-29 Release 5.5 accounting
Idh 2008-08-15 Release 5.9 accounting
Idh 2008-12-18 5.12 accounting

Clone Sequence Records

GH01524.complete Sequence

2050 bp (2050 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047505

> GH01524.complete
TTCGCCGAGTGCTTATTGTTTTTTATACTCTCGTTACATTATTAATTAAA
ACACTTGCTTTTAAGTGTGCCGAGTGTTGTGAGAGCAGCTTATCAAAGTC
CGAGGTTCTAAATCTTATCTGACTGGGCATTTAGAACGTTGTGATTACGC
CGATTGCGCAACAATTTGACGATTGTACGCCACCCAAGAGAGTCGGAAAC
TGTAGCGCTTAACGGCACTTTACAGTTATCAGTTACGGTTAGAGCGCGTC
TGACGCCCACAGCATTTAATTTTGCTTTGTCCGAAAATTGTTCTCTTTCC
CGGGACTCCAGTGTCATATTGTCTCGTATTGTTTCACATTGGTGACAAAC
ACTATCGTCTCTCGTTTCCAGTCGTCGGTCGGTTCATTCATAATAATAAT
ACCCACATCCACACCAATCCGGTTGTAAAATGTTCGCCCTGCGCCGCACA
GCCGCAATGATGACGTCGGTCCACCGGCAGCCGCATCTCAGCCAGGCCGT
TTTTCGGGCCAATTTCGCCATCAGCGCCGCGATGGCCCAGAAGATCAAAG
CCGGTCCCGTTGTGGATGTCCTCGGTGACGAGATGACCCGCATCATTTGG
GACTCCATTAAGAGCCAACTGATTCTGCCCTTCCTGGACATTGAGCTGCA
TACCTACGATCTTGGTATTGAGAACCGCGATAAAACCGAGGACCAGGTCA
CCATTGACTGTGCTGAGGCCATCAAGAAGTACAACGTGGGCATCAAGTGC
GCCACAATCACTCCCGACGAGAAGCGCGTAGAGGAGTTCAACCTGAAGAA
GATGTGGAAGTCGCCCAACGGTACCATCCGTAACATCTTGGGAGGAACCG
TCTTCCGTGAGGCAATCATCTGCAAGAACGTGCCCCGTCTGGTGACTGGC
TGGCAGAAGCCTATTGTGATCGGTCGCCATGCCCACGCCGATCAGTACAA
GGCCGTCGACTACGTGGTTCCCGGACCCGGCAAGCTGACCCTCACCTGGA
AGGGAACCGACGGTCAGGTGATCGATGAGGTCATTAATGACTTCAAGGGC
CCCGGTATTGCCCTGGGAATGTTCAACACGGACGATTCCATTGTGGACTT
TGCCCACGCCTCTTTCAAATATGCTCTGGACCGCAAGCTGCCGCTGTACA
TGAGCACCAAGAACACCATTCTGAAGAAGTACGATGGACGCTTCAAGGAC
ATATTCGAGGACCTGTACAACAAGCAGTACAAGAAGGAGTACGAGGCGGC
GGGCATCTGGTATGAACACCGTCTCATCGACGATATGGTTGCTTATGCCA
TGAAGTCGGAGGGTGGCTTCGTGTGGGCCTGCAAGAACTACGACGGTGAT
GTGCAGTCGGACTCCGTTGCCCAGGGCTACGGATCTCTGGGTCTGATGAC
CTCCGTGCTGCTATGCCCCGATGGCAAGACCGTGGAGGCTGAAGCCGCTC
ACGGAACGGTGACGCGTCACTTCCGCTTCTACCAGCAGGGCAAGGAGACC
TCCACCAACCCCATTGCCTCGATATTCGCCTGGACCCGTGGCCTGCTGCA
TCGTGCCAAGCTGGACAACAATGAGCCACTGAAGCAGTTCGCCGACACCC
TTGAGCAGGTGTGCATCGACACAATTGAGAGCGGCGCCATGACCAAGGAT
CTGGCCATCTGCATTAAAGGCAACATCAACGCCGTTACTCGCAGGGACTA
CCAGGAGACTTTTGAGTTCATTAACACGCTGGCCAAGAACCTGGAGGGTG
CCCTGGCCAAGAATGCCGTTGCTGCCAAATGACTATCCGGCACTCAGTCC
GAGCAGCAGGCCTCGCATCTCTAGAAAACTACTCAGCGATGCCTTGTCCT
CGTCACCATATTCACAATATTTCCATTCGTTTTTGTAGATGTGCATGTCC
TAGGCTAAAAATCCGTGTCCTCGATGCATGTTTCCCACTGTTTCATTGTC
TCTGCGAGACGCAAAAAAAAACCCTGATTTCCCTTTAACGTCTAACGGAA
AAGAAATTTCAAATAAATGTATTTTTATACCGAAAAAAAAAAAAAAAAAA

GH01524.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Idh-RB 2218 Idh-RB 125..2156 1..2032 10160 100 Plus
Idh-RJ 1930 Idh-RJ 207..1868 371..2032 8310 100 Plus
Idh-RC 1892 Idh-RC 365..1866 531..2032 7510 100 Plus
Idh-RC 1892 Idh-RC 1..308 224..531 1540 100 Plus
Idh-RJ 1930 Idh-RJ 1..207 31..237 1035 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8348434..8349935 2032..531 7450 99.7 Minus
chr3L 24539361 chr3L 8350582..8351112 531..1 2565 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8356405..8357906 2032..531 7510 100 Minus
3L 28110227 3L 8358556..8359086 531..1 2655 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8349505..8351006 2032..531 7510 100 Minus
3L 28103327 3L 8351656..8352186 531..1 2655 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:52:10 has no hits.

GH01524.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:53:07 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8348434..8349934 532..2032 99 <- Minus
chr3L 8350582..8351112 1..531 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:04:04 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RG 1..1353 430..1782 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:21 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RG 1..1353 430..1782 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:45:42 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RG 1..1353 430..1782 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:51 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RG 1..1353 430..1782 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:40 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RG 1..1353 430..1782 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:31:08 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RB 1..2025 8..2032 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:21 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RB 1..2025 8..2032 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:45:42 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RB 1..2025 8..2032 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:51 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RB 1..2025 8..2032 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:40 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RB 1..2025 8..2032 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:53:07 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8356405..8357905 532..2032 100 <- Minus
3L 8358556..8359086 1..531 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:53:07 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8356405..8357905 532..2032 100 <- Minus
3L 8358556..8359086 1..531 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:53:07 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8356405..8357905 532..2032 100 <- Minus
3L 8358556..8359086 1..531 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:45:42 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8349505..8351005 532..2032 100 <- Minus
arm_3L 8351656..8352186 1..531 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:57 Download gff for GH01524.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8349505..8351005 532..2032 100 <- Minus
3L 8351656..8352186 1..531 100   Minus

GH01524.hyp Sequence

Translation from 429 to 1781

> GH01524.hyp
MFALRRTAAMMTSVHRQPHLSQAVFRANFAISAAMAQKIKAGPVVDVLGD
EMTRIIWDSIKSQLILPFLDIELHTYDLGIENRDKTEDQVTIDCAEAIKK
YNVGIKCATITPDEKRVEEFNLKKMWKSPNGTIRNILGGTVFREAIICKN
VPRLVTGWQKPIVIGRHAHADQYKAVDYVVPGPGKLTLTWKGTDGQVIDE
VINDFKGPGIALGMFNTDDSIVDFAHASFKYALDRKLPLYMSTKNTILKK
YDGRFKDIFEDLYNKQYKKEYEAAGIWYEHRLIDDMVAYAMKSEGGFVWA
CKNYDGDVQSDSVAQGYGSLGLMTSVLLCPDGKTVEAEAAHGTVTRHFRF
YQQGKETSTNPIASIFAWTRGLLHRAKLDNNEPLKQFADTLEQVCIDTIE
SGAMTKDLAICIKGNINAVTRRDYQETFEFINTLAKNLEGALAKNAVAAK
*

GH01524.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Idh-PJ 450 CG7176-PJ 1..450 1..450 2357 100 Plus
Idh-PI 450 CG7176-PI 1..450 1..450 2357 100 Plus
Idh-PG 450 CG7176-PG 1..450 1..450 2357 100 Plus
Idh-PB 450 CG7176-PB 1..450 1..450 2357 100 Plus
Idh-PC 469 CG7176-PC 1..469 1..450 2327 95.9 Plus

GH01524.pep Sequence

Translation from 429 to 1781

> GH01524.pep
MFALRRTAAMMTSVHRQPHLSQAVFRANFAISAAMAQKIKAGPVVDVLGD
EMTRIIWDSIKSQLILPFLDIELHTYDLGIENRDKTEDQVTIDCAEAIKK
YNVGIKCATITPDEKRVEEFNLKKMWKSPNGTIRNILGGTVFREAIICKN
VPRLVTGWQKPIVIGRHAHADQYKAVDYVVPGPGKLTLTWKGTDGQVIDE
VINDFKGPGIALGMFNTDDSIVDFAHASFKYALDRKLPLYMSTKNTILKK
YDGRFKDIFEDLYNKQYKKEYEAAGIWYEHRLIDDMVAYAMKSEGGFVWA
CKNYDGDVQSDSVAQGYGSLGLMTSVLLCPDGKTVEAEAAHGTVTRHFRF
YQQGKETSTNPIASIFAWTRGLLHRAKLDNNEPLKQFADTLEQVCIDTIE
SGAMTKDLAICIKGNINAVTRRDYQETFEFINTLAKNLEGALAKNAVAAK
*

GH01524.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10112-PA 469 GF10112-PA 1..458 1..439 2186 89.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15087-PA 479 GG15087-PA 1..467 1..438 2250 89.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16411-PA 446 GH16411-PA 1..444 1..446 2110 86.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Idh-PJ 450 CG7176-PJ 1..450 1..450 2357 100 Plus
Idh-PI 450 CG7176-PI 1..450 1..450 2357 100 Plus
Idh-PG 450 CG7176-PG 1..450 1..450 2357 100 Plus
Idh-PB 450 CG7176-PB 1..450 1..450 2357 100 Plus
Idh-PC 469 CG7176-PC 1..469 1..450 2327 95.9 Plus
Idh-PK 479 CG7176-PK 1..479 1..450 2317 93.9 Plus
Idh-PD 437 CG7176-PD 22..437 35..450 2191 100 Plus
Idh-PF 416 CG7176-PF 1..416 35..450 2191 100 Plus
Idh-PA 416 CG7176-PA 1..416 35..450 2191 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12492-PA 441 GI12492-PA 14..433 25..444 2107 90.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24577-PA 448 GL24577-PA 1..437 1..439 2183 91.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20156-PA 448 GA20156-PA 1..437 1..439 2183 91.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24945-PA 469 GM24945-PA 1..469 1..450 2337 92.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12997-PA 479 GD12997-PA 1..479 1..450 2329 91 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12396-PA 452 GJ12396-PA 1..444 1..446 2156 88.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18037-PA 449 GK18037-PA 1..449 1..450 2184 89.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21312-PA 469 GE21312-PA 1..458 1..439 2272 92.1 Plus