Clone GH01554 Report

Search the DGRC for GH01554

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:15
Well:54
Vector:pOT2
Associated Gene/TranscriptPGRP-LE-RA
Protein status:GH01554.pep: gold
Preliminary Size:1534
Sequenced Size:1374

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8995 2001-09-19 Blastp of sequenced clone
CG8995 2003-01-01 Sim4 clustering to Release 3
PGRP-LE 2008-04-29 Release 5.5 accounting
PGRP-LE 2008-08-15 Release 5.9 accounting
PGRP-LE 2008-12-18 5.12 accounting

Clone Sequence Records

GH01554.complete Sequence

1374 bp (1374 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058258

> GH01554.complete
TGGACTGATATGCAAAAAAGCATTTCACCACGGCACCTGCGCATATAATG
GTGGATAGCCTGTGGAACGTCCTTATCTTATCGTGTAAGGTGGACACGAC
ACGAACACTAATCAGAGAATAGAGCAGTTCTAACTCACAATATTGATAAA
CAAAGTAAGGGCCAGCCGAGAGATACACGCGCATTTATTGGCAGCAAACA
GAAGCCAAAACTACGGACATGTCCGAATCGGGAATCAAAAAGTTGAGCCA
GGAGCGGACTCGCGAATGGTTGGCTAGTCAGGAGGACGAGGAACTGGAGT
CCATTGCAGAGTCCTCGGTTGTGGACAGCTTGGACTACGATTATACCGAG
GAAGAGGAGGATGCCGACCAAAATACCAGTGAAGAAATCAGCACTATGAC
ACTAGGCACTCAAATCGCTACCAAAAAGCATTCGATCATCAGCGACACCA
TAAGGGACCTTATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTT
AATATAAGCAACTCCACGAACGTCCATATCGGCAATGTTACCAATATTAA
TGGAAATATACAAATCATAGCCGATGGCCTTACTCAAAACCGAAGAGATC
GGCGGCATGTTTCACCACCGAGAGATAACGCTCCCAAAACTCCGACACAT
TTCGAAGACGACTATCAGGACGAGTCGGAGGAGAGGGTGCGCTCGGATGT
GTTCATCAGGCGCCAGAAATTCAAAATACCCAAGGAGCTGTCCGCCATCA
TTCCGCGCTCTTCGTGGCTAGCACAGAAGCCCATGGACGAGCCACTGCCC
TTGCAACTGCCTGTTAAATATGTGGTTATCTTACACACAGCTACAGAGAG
TTCAGAAAAGCGGGCGATCAACGTAAGACTTATCCGTGACATGCAGTGCT
TCCACATTGAGTCGCGGGGATGGAATGACATTGCGTACAACTTCCTGGTC
GGCTGCGATGGCAACATCTACGAGGGACGCGGATGGAAAACGGTGGGCGC
CCACACTCTGGGTTACAACAGGATCTCGCTGGGGATCAGTTTCATTGGAT
GCTTCATGAAAGAACTCCCGACGGCAGACGCCTTGAATATGTGCCGCAAT
CTGTTGGCCCGCGGCGTTGAGGATGGTCACATATCCACCGACTATAGATT
AATTTGTCACTGCCAGTGCAATTCGACGGAGAGTCCTGGTCGGCGATTGT
ACGAGGAGATACAGACATGGCCCCACTTTTACAATATCGAGGAGGAGGAA
CAATGAGGGACAAAAGAAGAGCACCATTTCACATACTTAGACTTAAATGC
ACCCGAGTTACGTTTATAATGTTGAACATTAAATCACCTGTTTATAAATT
TTCCAAAAAAAAAAAAAAAAAAAA

GH01554.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-RA 1704 PGRP-LE-RA 260..1614 1..1355 6775 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15691012..15691472 1354..894 2305 100 Minus
chrX 22417052 chrX 15692368..15692784 417..1 2085 100 Minus
chrX 22417052 chrX 15691999..15692299 717..417 1505 100 Minus
chrX 22417052 chrX 15691822..15691935 831..718 555 99.1 Minus
chrX 22417052 chrX 15691542..15691606 896..832 325 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15801152..15801613 1355..894 2310 100 Minus
X 23542271 X 15802509..15802925 417..1 2085 100 Minus
X 23542271 X 15802140..15802440 717..417 1505 100 Minus
X 23542271 X 15801963..15802076 831..718 570 100 Minus
X 23542271 X 15801683..15801747 896..832 325 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15809250..15809711 1355..894 2310 100 Minus
X 23527363 X 15810607..15811023 417..1 2085 100 Minus
X 23527363 X 15810238..15810538 717..417 1505 100 Minus
X 23527363 X 15810061..15810174 831..718 570 100 Minus
X 23527363 X 15809781..15809845 896..832 325 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:34:45 has no hits.

GH01554.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:35:45 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15691012..15691469 897..1354 100 <- Minus
chrX 15691542..15691606 832..896 100 <- Minus
chrX 15691822..15691935 718..831 99 <- Minus
chrX 15691999..15692298 418..717 100 <- Minus
chrX 15692368..15692784 1..417 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:04:09 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 1..1038 219..1256 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:44 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 1..1038 219..1256 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:52:29 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 1..1038 219..1256 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:37 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 1..1038 219..1256 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:28 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 1..1038 219..1256 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:01:58 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 1..1354 1..1354 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:43 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 1..1354 1..1354 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:52:29 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 45..1398 1..1354 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:37 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 1..1354 1..1354 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:28 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 45..1398 1..1354 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:35:45 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
X 15801153..15801610 897..1354 100 <- Minus
X 15801683..15801747 832..896 100 <- Minus
X 15801963..15802076 718..831 100 <- Minus
X 15802140..15802439 418..717 100 <- Minus
X 15802509..15802925 1..417 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:35:45 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
X 15801153..15801610 897..1354 100 <- Minus
X 15801683..15801747 832..896 100 <- Minus
X 15801963..15802076 718..831 100 <- Minus
X 15802140..15802439 418..717 100 <- Minus
X 15802509..15802925 1..417 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:35:45 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
X 15801153..15801610 897..1354 100 <- Minus
X 15801683..15801747 832..896 100 <- Minus
X 15801963..15802076 718..831 100 <- Minus
X 15802140..15802439 418..717 100 <- Minus
X 15802509..15802925 1..417 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:52:29 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15695186..15695643 897..1354 100 <- Minus
arm_X 15695716..15695780 832..896 100 <- Minus
arm_X 15695996..15696109 718..831 100 <- Minus
arm_X 15696173..15696472 418..717 100 <- Minus
arm_X 15696542..15696958 1..417 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:19:16 Download gff for GH01554.complete
Subject Subject Range Query Range Percent Splice Strand
X 15810238..15810537 418..717 100 <- Minus
X 15809251..15809708 897..1354 100 <- Minus
X 15809781..15809845 832..896 100 <- Minus
X 15810061..15810174 718..831 100 <- Minus
X 15810607..15811023 1..417 100   Minus

GH01554.pep Sequence

Translation from 218 to 1255

> GH01554.pep
MSESGIKKLSQERTREWLASQEDEELESIAESSVVDSLDYDYTEEEEDAD
QNTSEEISTMTLGTQIATKKHSIISDTIRDLMNSINSIQTLGNVNISNST
NVHIGNVTNINGNIQIIADGLTQNRRDRRHVSPPRDNAPKTPTHFEDDYQ
DESEERVRSDVFIRRQKFKIPKELSAIIPRSSWLAQKPMDEPLPLQLPVK
YVVILHTATESSEKRAINVRLIRDMQCFHIESRGWNDIAYNFLVGCDGNI
YEGRGWKTVGAHTLGYNRISLGISFIGCFMKELPTADALNMCRNLLARGV
EDGHISTDYRLICHCQCNSTESPGRRLYEEIQTWPHFYNIEEEEQ*

GH01554.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22064-PA 196 GF22064-PA 53..192 198..337 373 49.3 Plus
Dana\GF10681-PA 371 GF10681-PA 59..219 177..337 361 42.2 Plus
Dana\GF16643-PA 226 GF16643-PA 31..198 177..344 346 42 Plus
Dana\GF12377-PA 185 GF12377-PA 24..183 177..337 312 36.6 Plus
Dana\GF21644-PA 185 GF21644-PA 24..183 177..337 312 36.6 Plus
Dana\GF10681-PA 371 GF10681-PA 232..366 173..312 206 36.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19370-PA 345 GG19370-PA 1..345 1..345 1765 94.8 Plus
Dere\GG15356-PA 501 GG15356-PA 336..496 177..337 395 46 Plus
Dere\GG15359-PA 369 GG15359-PA 59..219 177..337 381 44.7 Plus
Dere\GG18426-PA 243 GG18426-PA 100..239 198..337 361 49.3 Plus
Dere\GG17219-PA 306 GG17219-PA 106..273 177..344 348 42 Plus
Dere\GG15359-PA 369 GG15359-PA 232..363 173..312 203 36.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12194-PA 361 GH12194-PA 2..358 4..345 1276 69.4 Plus
Dgri\GH15171-PA 155 GH15171-PA 4..151 191..337 369 48 Plus
Dgri\GH15170-PA 506 GH15170-PA 216..497 89..337 368 35.1 Plus
Dgri\GH21354-PA 184 GH21354-PA 22..182 176..337 347 41.4 Plus
Dgri\GH21355-PA 184 GH21355-PA 22..182 176..337 347 40.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-PB 345 CG8995-PB 1..345 1..345 1813 100 Plus
PGRP-LE-PA 345 CG8995-PA 1..345 1..345 1813 100 Plus
PGRP-LC-PE 329 CG4432-PE 184..325 196..337 382 52.1 Plus
PGRP-LC-PD 500 CG4432-PD 355..496 196..337 382 52.1 Plus
PGRP-LC-PA 500 CG4432-PA 355..496 196..337 382 52.1 Plus
PGRP-LF-PA 369 CG4437-PA 59..219 177..337 370 43.5 Plus
PGRP-SA-PB 203 CG11709-PB 60..199 198..337 358 49.3 Plus
PGRP-SA-PA 203 CG11709-PA 60..199 198..337 358 49.3 Plus
PGRP-LB-PF 215 CG14704-PF 15..182 177..344 329 42.6 Plus
PGRP-LB-PE 215 CG14704-PE 15..182 177..344 329 42.6 Plus
PGRP-LB-PA 215 CG14704-PA 15..182 177..344 329 42.6 Plus
PGRP-LB-PB 215 CG14704-PB 15..182 177..344 329 42.6 Plus
PGRP-LB-PC 232 CG14704-PC 32..199 177..344 329 42.6 Plus
PGRP-LB-PD 255 CG14704-PD 55..222 177..344 329 42.6 Plus
PGRP-SC2-PA 184 CG14745-PA 23..182 177..337 311 38.5 Plus
PGRP-LC-PJ 340 CG4432-PJ 183..329 194..340 306 41.5 Plus
PGRP-LC-PC 511 CG4432-PC 354..500 194..340 306 41.5 Plus
PGRP-SC1b-PB 185 CG8577-PB 45..183 199..337 299 40.3 Plus
PGRP-SC1b-PA 185 CG8577-PA 45..183 199..337 299 40.3 Plus
PGRP-SC1a-PA 185 CG14746-PA 45..183 199..337 299 40.3 Plus
PGRP-SB1-PA 190 CG9681-PA 27..187 177..337 289 38.9 Plus
PGRP-LC-PK 330 CG4432-PK 166..329 178..337 287 40.2 Plus
PGRP-LC-PI 501 CG4432-PI 337..500 178..337 287 40.2 Plus
PGRP-LC-PH 520 CG4432-PH 356..519 178..337 287 40.2 Plus
PGRP-LC-PB 520 CG4432-PB 356..519 178..337 287 40.2 Plus
PGRP-SB2-PA 182 CG9697-PA 16..178 174..337 281 37.6 Plus
PGRP-SD-PA 186 CG7496-PA 22..182 177..337 252 33.5 Plus
PGRP-LA-PF 299 CG32042-PF 114..280 177..344 241 35.1 Plus
PGRP-LA-PE 368 CG32042-PE 183..349 177..344 241 35.1 Plus
PGRP-LA-PG 138 CG32042-PG 1..119 222..344 201 37.4 Plus
PGRP-LA-PC 138 CG32042-PC 1..119 222..344 201 37.4 Plus
PGRP-LF-PA 369 CG4437-PA 229..363 170..312 197 35.9 Plus
PGRP-SB2-PB 191 CG9697-PB 16..120 174..279 183 41.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10922-PA 357 GI10922-PA 1..357 1..345 1256 70.7 Plus
Dmoj\GI12108-PA 507 GI12108-PA 341..503 177..339 400 47.2 Plus
Dmoj\GI20770-PA 184 GI20770-PA 22..182 176..337 365 42 Plus
Dmoj\GI12109-PA 155 GI12109-PA 9..151 195..337 349 46.9 Plus
Dmoj\GI22456-PA 212 GI22456-PA 34..196 175..337 346 43.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18052-PA 353 GL18052-PA 8..353 4..345 1393 76.5 Plus
Dper\GL18427-PA 462 GL18427-PA 304..458 183..337 406 49 Plus
Dper\GL18428-PA 180 GL18428-PA 18..178 177..337 362 43.5 Plus
Dper\GL12268-PA 310 GL12268-PA 119..281 177..339 356 43.3 Plus
Dper\GL26887-PA 200 GL26887-PA 57..196 198..337 347 47.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22837-PA 214 GA22837-PA 8..212 4..204 633 66.3 Plus
Dpse\GA29295-PA 508 GA29295-PA 350..504 183..337 403 48.4 Plus
Dpse\GA18183-PA 370 GA18183-PA 59..219 177..337 361 41.6 Plus
Dpse\GA29296-PA 163 GA29296-PA 1..161 177..337 357 43.5 Plus
Dpse\GA21462-PA 66 GA21462-PA 1..66 280..345 343 89.4 Plus
Dpse\GA18183-PA 370 GA18183-PA 236..366 177..312 217 37.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22523-PA 218 GM22523-PA 1..210 1..210 1057 96.7 Plus
Dsec\GM25129-PA 500 GM25129-PA 355..496 196..337 392 51.4 Plus
Dsec\GM22524-PA 66 GM22524-PA 1..66 280..345 361 97 Plus
Dsec\GM25131-PA 371 GM25131-PA 60..221 177..337 354 41.4 Plus
Dsec\GM26096-PA 232 GM26096-PA 32..199 177..344 343 41.5 Plus
Dsec\GM25131-PA 371 GM25131-PA 234..365 173..312 227 39.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24678-PA 345 GD24678-PA 1..345 1..345 1830 98.3 Plus
Dsim\GD14166-PA 500 GD14166-PA 347..498 185..339 387 47.7 Plus
Dsim\PGRP-SA-PA 202 GD17030-PA 59..198 198..337 366 49.3 Plus
Dsim\GD14168-PA 337 GD14168-PA 27..187 177..337 366 41.6 Plus
Dsim\GD15111-PA 295 GD15111-PA 95..262 177..344 345 42 Plus
Dsim\GD14168-PA 337 GD14168-PA 200..331 173..312 217 38 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18565-PA 366 GJ18565-PA 2..365 4..345 1324 71.2 Plus
Dvir\GJ13383-PA 534 GJ13383-PA 373..527 183..337 405 49.7 Plus
Dvir\GJ15950-PA 196 GJ15950-PA 53..192 198..337 365 50 Plus
Dvir\GJ13384-PA 173 GJ13384-PA 26..169 194..337 353 45.8 Plus
Dvir\GJ10054-PA 214 GJ10054-PA 35..198 174..337 348 43.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20090-PA 363 GK20090-PA 1..361 1..345 1339 72.4 Plus
Dwil\GK23800-PA 541 GK23800-PA 373..529 181..337 380 46.5 Plus
Dwil\GK23822-PA 541 GK23822-PA 59..219 177..337 356 41 Plus
Dwil\GK21737-PA 185 GK21737-PA 13..183 161..337 337 37.9 Plus
Dwil\GK11791-PA 212 GK11791-PA 52..192 198..337 330 45.4 Plus
Dwil\GK23822-PA 541 GK23822-PA 377..533 177..331 316 44.3 Plus
Dwil\GK23822-PA 541 GK23822-PA 228..364 169..312 206 34.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16017-PA 347 GE16017-PA 1..345 1..345 1787 95.4 Plus
Dyak\GE20818-PA 500 GE20818-PA 347..496 185..337 392 49 Plus
Dyak\GE20821-PA 370 GE20821-PA 60..220 177..337 370 43.5 Plus
Dyak\PGRP-SA-PA 202 GE15944-PA 59..198 198..337 362 49.3 Plus
Dyak\GE24618-PA 233 GE24618-PA 32..199 177..344 351 43.3 Plus
Dyak\GE20821-PA 370 GE20821-PA 233..364 173..312 203 35.9 Plus

GH01554.hyp Sequence

Translation from 218 to 1255

> GH01554.hyp
MSESGIKKLSQERTREWLASQEDEELESIAESSVVDSLDYDYTEEEEDAD
QNTSEEISTMTLGTQIATKKHSIISDTIRDLMNSINSIQTLGNVNISNST
NVHIGNVTNINGNIQIIADGLTQNRRDRRHVSPPRDNAPKTPTHFEDDYQ
DESEERVRSDVFIRRQKFKIPKELSAIIPRSSWLAQKPMDEPLPLQLPVK
YVVILHTATESSEKRAINVRLIRDMQCFHIESRGWNDIAYNFLVGCDGNI
YEGRGWKTVGAHTLGYNRISLGISFIGCFMKELPTADALNMCRNLLARGV
EDGHISTDYRLICHCQCNSTESPGRRLYEEIQTWPHFYNIEEEEQ*

GH01554.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-PB 345 CG8995-PB 1..345 1..345 1813 100 Plus
PGRP-LE-PA 345 CG8995-PA 1..345 1..345 1813 100 Plus
PGRP-LC-PE 329 CG4432-PE 184..325 196..337 382 52.1 Plus
PGRP-LC-PD 500 CG4432-PD 355..496 196..337 382 52.1 Plus
PGRP-LC-PA 500 CG4432-PA 355..496 196..337 382 52.1 Plus