Clone GH01592 Report

Search the DGRC for GH01592

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:15
Well:92
Vector:pOT2
Associated Gene/TranscriptCG4847-RA
Protein status:GH01592.pep: gold
Preliminary Size:1173
Sequenced Size:1317

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4847 2001-01-01 Release 2 assignment
CG4847 2001-07-04 Blastp of sequenced clone
CG4847 2003-01-01 Sim4 clustering to Release 3
CG4847 2008-04-29 Release 5.5 accounting
CG4847 2008-08-15 Release 5.9 accounting
CG4847 2008-12-18 5.12 accounting

Clone Sequence Records

GH01592.complete Sequence

1317 bp (1317 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047507

> GH01592.complete
TCCAAGTCCATCGTCCACAAAGATCAGTATGAAGCTTCTGTTGGTTCTTC
CACTTCTGGTGGCTGTGGTCTCTGGCCAGGGATTCGGAGGCGGTGGATTT
GGAGGCGGATTTGGAGGTGGACTCGGAGGCGGATTTGGAGGTGGACTCGG
AGGCTTGGGCAACAATCGAGTGGGTGGAGCTTTACAAAATGTGGCCGGCG
CCGTTCAGAATGCCGTGGGCAACATTGCCAAGGCTGTGCCCAAGGTGCCG
CTGCTCTCAAACGTCCAGGACTTTGGTGACTTCTTGAGCCAATCTGGAAA
GACCTATCTCTCCGCCGCTGATCGCGCTCTTCATGAAGGTGCCTTCGCTT
CCACCAAGAACCTGGTGGAAGCCGGAAACGCAGCCTTTGCCCAAGGAGTG
CACACCTTCAAGCAGGCCGTGAACGCCTTCGCCGATCTGACCCACTCTGA
GTTCCTTAGTCAATTGACCGGTCTGAAGAGAAGTCCGGAGGCTAAGGCTC
GAGCTGCTGCCAGTTTGAAGTTGGTCAACCTGCCTGCGAAGCCCATCCCG
GATGCCTTCGATTGGCGCGAGCATGGCGGTGTCACACCAGTCAAATTCCA
GGGTACCTGTGGCTCCTGTTGGGCCTTTGCCACCACTGGTGCCATTGAGG
GACACACCTTCCGCAAGACCGGCAGCCTGCCCAATCTCTCTGAGCAGAAT
CTGGTCGACTGTGGTCCGGTGGAGGACTTTGGCCTGAATGGCTGCGATGG
TGGCTTCCAGGAGGCCGCATTCTGTTTCATCGATGAGGTGCAAAAGGGTG
TGTCCCAGGAGGGGGCCTATCCCTACATTGACAACAAGGGCACGTGCAAG
TACGATGGCAGCAAGTCCGGAGCCACCCTCCAGGGATTCGCCGCTATTCC
GCCCAAGGACGAGGAGCAGCTGAAGAAGGTGGTGGCCACTCTGGGACCAG
TTGCCTGTTCGGTGAATGGTTTGGAGACTCTTAAGAACTACGCCGGTGGC
ATCTATAACGACGATGAGTGCAACAAGGGCGAGCCGAACCACTCCATTCT
GGTCGTCGGTTACGGATCGGAGAAAGGACAGGATTACTGGATCGTCAAGA
ACTCCTGGGACGACACCTGGGGCGAAAAGGGCTACTTCCGCCTGCCTCGC
GGCAAAAACTACTGCTTCATTGCTGAGGAGTGCTCCTATCCCGTGGTTTA
AGCGGGGAATCCGAAATTTATGGCAAAATTTACTGTGCAGTTTGTGATGT
GGACTTGGCGTTGGTTGCGTCCATTTCTTAAATAAAAGTCTTTTCTTAAA
AAAAAAAAAAAAAAAAA

GH01592.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-RA 1459 CG4847-RA 48..1346 1..1299 6495 100 Plus
CG4847-RD 1561 CG4847-RD 216..1494 21..1299 6395 100 Plus
CG4847-RB 1370 CG4847-RB 25..1303 21..1299 6395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13400120..13400921 496..1297 3920 99.3 Plus
chr2R 21145070 chr2R 13399520..13399785 21..286 1330 100 Plus
chr2R 21145070 chr2R 13399845..13400055 286..496 1040 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17513050..17513853 496..1299 4020 100 Plus
2R 25286936 2R 17512450..17512715 21..286 1330 100 Plus
2R 25286936 2R 17512775..17512985 286..496 1055 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17514249..17515052 496..1299 4020 100 Plus
2R 25260384 2R 17513649..17513914 21..286 1330 100 Plus
2R 25260384 2R 17513974..17514184 286..496 1055 100 Plus
Blast to na_te.dros performed 2019-03-16 01:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 2908..3003 248..155 123 61.5 Minus

GH01592.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:22:06 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13398593..13398614 1..22 100 -> Plus
chr2R 13399522..13399785 23..286 82 -> Plus
chr2R 13399846..13400054 287..495 99 -> Plus
chr2R 13400120..13400921 496..1297 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:04:20 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RD 83..1263 21..1201 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:23 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RD 83..1263 21..1201 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:05:23 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RD 83..1263 21..1201 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:52 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RD 83..1263 21..1201 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:31:43 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RD 83..1263 21..1201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:31:10 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RA 1..1297 1..1297 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:22 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RA 1..1297 1..1297 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:05:23 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RA 11..1307 1..1297 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:52 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RA 1..1297 1..1297 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:31:43 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RA 11..1307 1..1297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:06 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17511523..17511544 1..22 100 -> Plus
2R 17512452..17512715 23..286 100 -> Plus
2R 17512776..17512984 287..495 100 -> Plus
2R 17513050..17513851 496..1297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:06 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17511523..17511544 1..22 100 -> Plus
2R 17512452..17512715 23..286 100 -> Plus
2R 17512776..17512984 287..495 100 -> Plus
2R 17513050..17513851 496..1297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:06 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17511523..17511544 1..22 100 -> Plus
2R 17512452..17512715 23..286 100 -> Plus
2R 17512776..17512984 287..495 100 -> Plus
2R 17513050..17513851 496..1297 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:23 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13399028..13399049 1..22 100 -> Plus
arm_2R 13399957..13400220 23..286 100 -> Plus
arm_2R 13400281..13400489 287..495 100 -> Plus
arm_2R 13400555..13401356 496..1297 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:59 Download gff for GH01592.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17513651..17513914 23..286 100 -> Plus
2R 17513975..17514183 287..495 100 -> Plus
2R 17514249..17515050 496..1297 100   Plus
2R 17512722..17512743 1..22 100 -> Plus

GH01592.hyp Sequence

Translation from 1 to 1200

> GH01592.hyp
PSPSSTKISMKLLLVLPLLVAVVSGQGFGGGGFGGGFGGGLGGGFGGGLG
GLGNNRVGGALQNVAGAVQNAVGNIAKAVPKVPLLSNVQDFGDFLSQSGK
TYLSAADRALHEGAFASTKNLVEAGNAAFAQGVHTFKQAVNAFADLTHSE
FLSQLTGLKRSPEAKARAAASLKLVNLPAKPIPDAFDWREHGGVTPVKFQ
GTCGSCWAFATTGAIEGHTFRKTGSLPNLSEQNLVDCGPVEDFGLNGCDG
GFQEAAFCFIDEVQKGVSQEGAYPYIDNKGTCKYDGSKSGATLQGFAAIP
PKDEEQLKKVVATLGPVACSVNGLETLKNYAGGIYNDDECNKGEPNHSIL
VVGYGSEKGQDYWIVKNSWDDTWGEKGYFRLPRGKNYCFIAEECSYPVV*

GH01592.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-PD 420 CG4847-PD 28..420 7..399 2090 99.7 Plus
CG4847-PE 390 CG4847-PE 1..390 10..399 2081 100 Plus
CG4847-PC 390 CG4847-PC 1..390 10..399 2081 100 Plus
CG4847-PA 390 CG4847-PA 1..390 10..399 2081 100 Plus
CG6347-PA 352 CG6347-PA 30..352 83..399 733 46.2 Plus

GH01592.pep Sequence

Translation from 28 to 1200

> GH01592.pep
MKLLLVLPLLVAVVSGQGFGGGGFGGGFGGGLGGGFGGGLGGLGNNRVGG
ALQNVAGAVQNAVGNIAKAVPKVPLLSNVQDFGDFLSQSGKTYLSAADRA
LHEGAFASTKNLVEAGNAAFAQGVHTFKQAVNAFADLTHSEFLSQLTGLK
RSPEAKARAAASLKLVNLPAKPIPDAFDWREHGGVTPVKFQGTCGSCWAF
ATTGAIEGHTFRKTGSLPNLSEQNLVDCGPVEDFGLNGCDGGFQEAAFCF
IDEVQKGVSQEGAYPYIDNKGTCKYDGSKSGATLQGFAAIPPKDEEQLKK
VVATLGPVACSVNGLETLKNYAGGIYNDDECNKGEPNHSILVVGYGSEKG
QDYWIVKNSWDDTWGEKGYFRLPRGKNYCFIAEECSYPVV*

GH01592.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13132-PA 392 GF13132-PA 1..392 1..390 1213 64.9 Plus
Dana\GF13714-PA 352 GF13714-PA 24..352 68..390 764 46 Plus
Dana\GF17600-PA 333 GF17600-PA 15..333 66..390 634 43.2 Plus
Dana\GF13722-PA 417 GF13722-PA 111..417 88..390 602 40 Plus
Dana\GF17358-PA 329 GF17358-PA 27..329 81..390 503 36.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20691-PA 378 GG20691-PA 33..378 45..390 1697 91.3 Plus
Dere\GG20405-PA 352 GG20405-PA 24..352 68..390 737 44.8 Plus
Dere\GG20414-PA 341 GG20414-PA 26..341 79..390 620 41.4 Plus
Dere\GG23942-PA 338 GG23942-PA 35..338 81..390 501 34.5 Plus
Dere\GG11133-PA 615 GG11133-PA 309..614 82..390 487 36.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21411-PA 391 GH21411-PA 52..391 50..390 1162 63.2 Plus
Dgri\GH23906-PA 358 GH23906-PA 19..358 50..390 1160 63.2 Plus
Dgri\GH21038-PA 349 GH21038-PA 23..349 67..390 781 45.9 Plus
Dgri\GH22826-PA 340 GH22826-PA 10..340 62..390 613 38.1 Plus
Dgri\GH20767-PA 329 GH20767-PA 36..329 91..390 519 38.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-PE 390 CG4847-PE 1..390 1..390 2081 100 Plus
CG4847-PD 420 CG4847-PD 31..420 1..390 2081 100 Plus
CG4847-PC 390 CG4847-PC 1..390 1..390 2081 100 Plus
CG4847-PA 390 CG4847-PA 1..390 1..390 2081 100 Plus
CG6347-PA 352 CG6347-PA 30..352 74..390 733 46.2 Plus
Cp1-PA 341 CG6692-PA 26..341 79..390 621 41.7 Plus
Cp1-PC 371 CG6692-PC 56..371 79..390 621 41.7 Plus
Cp1-PE 338 CG6692-PE 35..338 91..390 617 43 Plus
Cp1-PD 249 CG6692-PD 32..249 173..390 540 47.1 Plus
CG5367-PA 338 CG5367-PA 35..338 81..390 482 32.7 Plus
CG12163-PB 475 CG12163-PB 169..474 82..390 477 35.6 Plus
CG12163-PA 614 CG12163-PA 308..613 82..390 477 35.6 Plus
CG11459-PB 336 CG11459-PB 48..334 102..388 449 35.4 Plus
CG11459-PA 336 CG11459-PA 48..334 102..388 449 35.4 Plus
26-29-p-PA 549 CG8947-PA 245..546 82..387 405 33.4 Plus
Swim-PA 431 CG3074-PA 157..422 139..390 287 30.9 Plus
Swim-PB 431 CG3074-PB 157..422 139..390 287 30.9 Plus
CG6337-PB 340 CG6337-PB 27..336 81..388 243 28 Plus
CG6337-PA 340 CG6337-PA 27..336 81..388 243 28 Plus
CtsB1-PC 340 CG10992-PC 87..334 173..386 228 28.1 Plus
CtsB1-PA 340 CG10992-PA 87..334 173..386 228 28.1 Plus
CG2150-PA 188 CG2150-PA 8..72 3..64 148 51.5 Plus
CG7294-PA 127 CG7294-PA 1..72 1..57 146 52.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18587-PA 366 GI18587-PA 29..366 52..390 1148 63.8 Plus
Dmoj\GI21205-PA 339 GI21205-PA 13..339 66..390 655 40.7 Plus
Dmoj\GI18640-PA 243 GI18640-PA 17..243 169..390 613 51.5 Plus
Dmoj\GI14103-PA 334 GI14103-PA 29..334 79..390 518 33.8 Plus
Dmoj\GI20850-PA 329 GI20850-PA 36..329 91..390 516 36.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11434-PA 372 GL11434-PA 1..372 1..390 1315 66.2 Plus
Dper\GL17477-PA 353 GL17477-PA 24..353 68..390 740 45.1 Plus
Dper\GL17172-PA 341 GL17172-PA 11..341 62..390 615 38.4 Plus
Dper\GL19003-PA 335 GL19003-PA 32..335 81..390 498 33.4 Plus
Dper\GL22196-PA 627 GL22196-PA 321..626 82..390 457 34.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18475-PA 372 GA18475-PA 1..372 1..390 1316 66.5 Plus
Dpse\GA24205-PA 353 GA24205-PA 24..353 68..390 740 45.1 Plus
Dpse\GA25021-PA 341 GA25021-PA 11..341 62..390 618 38.7 Plus
Dpse\GA25021-PB 319 GA25021-PB 16..319 91..390 607 40.7 Plus
Dpse\GA23505-PA 323 GA23505-PA 24..323 81..390 449 33.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21790-PA 382 GM21790-PA 37..382 45..390 1758 95.1 Plus
Dsec\GM21493-PA 352 GM21493-PA 24..352 68..390 747 45.7 Plus
Dsec\GM21500-PA 341 GM21500-PA 26..341 79..390 629 42 Plus
Dsec\GM11735-PA 338 GM11735-PA 35..338 81..390 480 32.9 Plus
Dsec\GM10654-PA 615 GM10654-PA 309..614 82..390 476 36 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11280-PA 382 GD11280-PA 37..382 45..390 1769 96 Plus
Dsim\GD10987-PA 352 GD10987-PA 24..352 68..390 745 45.4 Plus
Dsim\GD10995-PA 341 GD10995-PA 26..341 79..390 623 41.7 Plus
Dsim\GD22268-PA 338 GD22268-PA 35..338 81..390 486 33.5 Plus
Dsim\GD19835-PA 336 GD19835-PA 22..336 76..390 447 34.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20385-PA 370 GJ20385-PA 37..370 56..390 1202 68.5 Plus
Dvir\GJ21653-PA 342 GJ21653-PA 17..342 68..390 759 45.4 Plus
Dvir\GJ20806-PA 339 GJ20806-PA 9..339 62..390 630 39 Plus
Dvir\GJ11310-PA 328 GJ11310-PA 26..327 81..389 568 36.5 Plus
Dvir\GJ13554-PA 331 GJ13554-PA 26..331 81..390 566 39.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22909-PA 370 GK22909-PA 1..370 1..390 1272 61.4 Plus
Dwil\GK22908-PA 381 GK22908-PA 1..381 1..390 1152 56.2 Plus
Dwil\GK17860-PA 341 GK17860-PA 21..334 67..374 721 46.6 Plus
Dwil\GK19626-PA 341 GK19626-PA 15..341 66..390 619 38.3 Plus
Dwil\GK14287-PA 610 GK14287-PA 303..609 82..390 463 33.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11675-PA 384 GE11675-PA 1..384 1..390 1752 90.5 Plus
Dyak\GE12565-PA 353 GE12565-PA 24..353 68..390 745 45.5 Plus
Dyak\GE12574-PA 341 GE12574-PA 26..341 79..390 619 41.4 Plus
Dyak\GE26053-PA 338 GE26053-PA 35..338 81..390 487 34.2 Plus
Dyak\GE25302-PA 615 GE25302-PA 309..614 82..390 477 36 Plus