Clone GH01677 Report

Search the DGRC for GH01677

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:16
Well:77
Vector:pOT2
Associated Gene/TranscriptCG32425-RB
Protein status:GH01677.pep: gold
Preliminary Size:1252
Sequenced Size:1136

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32425 2003-08-11 Blastp of sequenced clone
CG32425 2008-04-29 Release 5.5 accounting
CG32425 2008-08-15 Release 5.9 accounting
CG32425 2008-12-18 5.12 accounting

Clone Sequence Records

GH01677.complete Sequence

1136 bp (1136 high quality bases) assembled on 2003-08-11

GenBank Submission: BT010307

> GH01677.complete
CCCCGTCGTGGAGATCGGATCGCATTAATTCTCCTGCTTAAAAGCCTGCA
CCGCCAGCAACGTCGAGCTAATGGAGGCCATGAAGAAATTGGACGCGGAC
CTGGTGGCCCTTTTCGCCACTGCTGCCTCCGCCGAACCTCTTAAGATTAG
GAAACAGCAGGAGGTCCTGTGGCCGGGAGCCGAGCCGGAGCAAACCGCCC
AGGAATCGGAGGATGATGAGCTGGTGATGACGCCGGAGCTCTTCCGCAGC
TGCAACGCCTTGCAGCTGCACTTGGAGGCACTGACATTGCAGCCGGAGGG
AACCCAACGCATGGAACTGGTTCAGAACGAAGTGCGACCCATTTTCACCG
TGGAGTGCCAGCTGTCGGGGGACTTGATCCGTAAAGTGCCGCGCCAACCG
ATGTTCCACATCATGCAGTTCGAGTCGGAGAAGTTCCAGAGCCTGACGCA
GTGCACCCGTTTCGGGCAGACGGCTCAGCGTCAGGTCGATATGGAAGATA
AGAGCCTGCAGGATCCGGAACAGAGTGCTGGCCATGTAGACATCACGGTT
TGGTGGCGCGAACCCGGCACCTGTCTCAACGAAATGCTCGGCATGGGCCG
CCTGGAGCTCAGGGAGCTCTACAGGGCATCCCTGTTGGAGCAGTGCAAGT
GCATTGCCATTCGGCGACGCGACGTCCACCTGGGTAGCGTGTACTTGAAG
ATCAGTCTGCTTCAGAATTTGAATGGTAGCCCGGAGCAGCCGCAGCAACA
GCAGCAGCAGCCGGGCCAAAAGAACGAAAGTGGAAACAAGGCAGCAGGTG
AATATATATGACTAATGTCGTGTGGTCGCCAATCGCAAGAACCATTGATT
CTTGGGCCCCCAAATCGAATACATCTGATACTAGCTGAACCACACGACTA
CAGCCACAACAACTACCAATTCTACCACCAAGCAGAACAACAAATGCTAT
ACAAATACCAAATCTACACGAGCCGCCCACAACCACGCCCACGCCTCCTG
CACTTACTCTATATGTTATTGATTGCCGTTATCCAAGTGCTGCCCATCAT
TCTGTCAATAAATACTTTTCATTTTCAAAAAAGAAAGCAAAACAAAACAA
AAAACCACCAACAAAACCAAAAAAAAAAAAAAAAAA

GH01677.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32425-RB 1449 CG32425-RB 284..1416 4..1136 5650 99.9 Plus
CG32425-RF 2278 CG32425-RF 1212..2278 44..1110 5320 99.9 Plus
CG32425.b 3241 CG32425.b 284..1077 4..797 3970 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20499020..20500090 48..1118 5355 100 Plus
chr3L 24539361 chr3L 20498907..20498951 4..48 225 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20510030..20511118 48..1136 5430 99.9 Plus
3L 28110227 3L 20509917..20509961 4..48 225 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20503130..20504218 48..1136 5430 99.9 Plus
3L 28103327 3L 20503017..20503061 4..48 225 100 Plus
Blast to na_te.dros performed 2019-03-16 15:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 3216..3265 919..968 124 72 Plus

GH01677.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:26:59 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20498903..20498950 1..47 97 -> Plus
chr3L 20499020..20500050 48..1078 97 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:04:42 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RF 820..1593 37..811 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:54:07 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RF 820..1593 37..811 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:45:10 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RF 820..1593 37..811 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 19:19:12 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:46:08 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RF 820..1593 37..811 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:17:28 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RB 280..1398 1..1118 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:54:07 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RB 280..1398 1..1118 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:45:10 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RB 14..1090 1..1076 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:19:12 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RB 280..1398 1..1118 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:46:08 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RB 14..1090 1..1076 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:26:59 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20509913..20509960 1..47 97 -> Plus
3L 20510030..20511100 48..1118 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:26:59 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20509913..20509960 1..47 97 -> Plus
3L 20510030..20511100 48..1118 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:26:59 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20509913..20509960 1..47 97 -> Plus
3L 20510030..20511100 48..1118 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:45:10 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20503013..20503060 1..47 97 -> Plus
arm_3L 20503130..20504200 48..1118 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:53:32 Download gff for GH01677.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20503130..20504200 48..1118 100   Plus
3L 20503013..20503060 1..47 97 -> Plus

GH01677.hyp Sequence

Translation from 70 to 810

> GH01677.hyp
MEAMKKLDADLVALFATAASAEPLKIRKQQEVLWPGAEPEQTAQESEDDE
LVMTPELFRSCNALQLHLEALTLQPEGTQRMELVQNEVRPIFTVECQLSG
DLIRKVPRQPMFHIMQFESEKFQSLTQCTRFGQTAQRQVDMEDKSLQDPE
QSAGHVDITVWWREPGTCLNEMLGMGRLELRELYRASLLEQCKCIAIRRR
DVHLGSVYLKISLLQNLNGSPEQPQQQQQQPGQKNESGNKAAGEYI*

GH01677.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32425-PB 246 CG32425-PB 1..246 1..246 1273 100 Plus
CG32425-PF 530 CG32425-PF 285..530 1..246 1273 100 Plus
CG32425-PA 759 CG32425-PA 1..242 1..242 1251 100 Plus
CG32425-PE 759 CG32425-PE 1..242 1..242 1251 100 Plus

GH01677.pep Sequence

Translation from 70 to 810

> GH01677.pep
MEAMKKLDADLVALFATAASAEPLKIRKQQEVLWPGAEPEQTAQESEDDE
LVMTPELFRSCNALQLHLEALTLQPEGTQRMELVQNEVRPIFTVECQLSG
DLIRKVPRQPMFHIMQFESEKFQSLTQCTRFGQTAQRQVDMEDKSLQDPE
QSAGHVDITVWWREPGTCLNEMLGMGRLELRELYRASLLEQCKCIAIRRR
DVHLGSVYLKISLLQNLNGSPEQPQQQQQQPGQKNESGNKAAGEYI*

GH01677.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10352-PA 739 GF10352-PA 1..238 1..242 957 79.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16125-PA 758 GG16125-PA 1..242 1..242 1171 94.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14555-PA 879 GH14555-PA 81..305 1..213 685 63 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32425-PB 246 CG32425-PB 1..246 1..246 1273 100 Plus
CG32425-PF 530 CG32425-PF 285..530 1..246 1273 100 Plus
CG32425-PA 759 CG32425-PA 1..242 1..242 1251 100 Plus
CG32425-PE 759 CG32425-PE 1..242 1..242 1251 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13403-PA 967 GI13403-PA 195..415 1..213 708 64.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12797-PA 577 GL12797-PA 3..240 2..233 741 61.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16893-PA 764 GA16893-PA 1..202 1..208 803 74 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22304-PA 742 GM22304-PA 1..220 1..220 1139 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14897-PA 758 GD14897-PA 1..242 1..242 1255 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11527-PA 780 GJ11527-PA 1..216 1..213 756 69.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12297-PA 907 GK12297-PA 38..301 1..215 665 54.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19693-PA 758 GE19693-PA 1..243 1..243 1174 93.8 Plus