Clone GH01709 Report

Search the DGRC for GH01709

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:17
Well:9
Vector:pOT2
Associated Gene/TranscriptCG5590-RA
Protein status:GH01709.pep: gold
Preliminary Size:1454
Sequenced Size:1459

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5590 2001-01-01 Release 2 assignment
CG5590 2001-07-04 Blastp of sequenced clone
CG5590 2003-01-01 Sim4 clustering to Release 3
CG5590 2008-04-29 Release 5.5 accounting
CG5590 2008-08-15 Release 5.9 accounting
CG5590 2008-12-18 5.12 accounting

Clone Sequence Records

GH01709.complete Sequence

1459 bp (1459 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047508

> GH01709.complete
TTGAATCTGCACTTTGGACTTTCTCTTGGAATCTTCGATTGAGAACACTG
TCACCGTTACCGGTGTGAATCCAGATCTCACAGCGAACGGTCTTTAAACT
TTGGACAGGATGATCAACACAGGAAAACTAGCCGGACGGACCCTGTTCAT
CACGGGAGCCTCTCGAGGAATTGGCAAGGAGATTGCTCTAAAGGCGGCCC
GCGATGGAGCCAACATTGTGGTGGCGGCCAAGACGGCGGAACCGCATCCC
AAGCTGCCGGGCACCATCTACTCGGCTGCGGAGGAGATCGAGAAGGCCGG
CGGAAAGGCCTATCCCTGCGTTGTGGATGTGCGGGATGAGCAACAGGTGC
GCAGCGCCGTTGAGGCCGCGGTGGCCAAGTTCGGTGGCATCGACATTGTG
ATCAATAACGCCAGCGCCATCTCGCTGACCAATACCCCGGATACGGACAT
GAAGCGCTACGACCTGATGCACAACATCAATACTCGAGGCACCTTTCTGG
TGTCCAAGGTGTGCCTGCCGTACCTGAAGAAGAGCAACCACGCCCACATT
CTCAACATCTCGCCGCCGCTGAGCATGAAGCCCAAGTGGTTTGGCCCGCA
TGTGGCCTACACCATGGCCAAGTACGGTATGTCCATGTGTGTGCTCGGCA
TGGCCGCGGAGTTCAAGGACGAGGGAATCTCCGTCAACGCTCTGTGGCCG
CGCACTGCCATTCACACGGCGGCCATCGAGATGCTGACGGGTCCAGATTC
CGCCAAGTGGTCACGCAAGCCGGAGATCATGGCCGATGCCGCCTACGCAA
TCCTGACCCGTGAGCCCAGGCAGTCTACTGGTCAGTTCTTTGTGGACGAC
GAGGTGCTGGAATCGGCGGGCATCACTGATCTCACCGAATACGCCTGCTT
CCGCGAGAACGCCGACAAGCTGATGGTGGACTTCTTCGTGGAGGAGAAGG
GAGCTCCGGTAGAGAATGAAGCTGCGGCAGAAGATGCTGCTGCTCCCGCA
AGTGGAGGAGACGTCAAGATTCCGCAGCTGTTCCGGAAAATCGAATCTCT
CCTCTCGCCCGAGATCGTCTCGAAGACGCAGGCTGTCTTCCAGTTCAACA
TCAGCGGCGCCGAGCAGGGCACCTGGTTCCTGGACCTGAAGAACGGCTCC
GGATCCTGCGGTGCCGGAACGCCAACTGCCGCTCCCGACGCCACGCTCAC
CATGAACTCGAAGAACTTCTTCGACATGTTCTCGGGTAAACTGAAGGCGG
CTCCCGCCTACATGACCGGCAAGCTGAAGATCAGCGGCGATTTCCAGAAG
GCTCTCAAGCTGGAGAAGCTAATGAAGGCGCTCAAGTCCAAGCTGTAGGG
TGCGATTGAGTGGCTGAGTTTTCTATTGTTTACAAGCGTTTCAGTTTATG
TATGTATGTATTTTCCTAATAAAGTATGAGATTCCTTAGAAAAAAAAAAA
AAAAAAAAA

GH01709.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5590-RA 1442 CG5590-RA 1..1442 1..1442 7210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23500501..23501939 1..1439 7045 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27677575..27679016 1..1442 7210 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27418406..27419847 1..1442 7210 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:37:42 has no hits.

GH01709.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:38:34 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23500501..23501939 1..1439 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:04:45 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
CG5590-RA 1..1239 110..1348 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:11 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
CG5590-RA 1..1239 110..1348 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:08:51 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
CG5590-RA 1..1239 110..1348 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:40 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
CG5590-RA 1..1239 110..1348 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:38:40 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
CG5590-RA 1..1239 110..1348 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:55 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
CG5590-RA 1..1439 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:11 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
CG5590-RA 1..1439 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:08:51 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
CG5590-RA 54..1492 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:40 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
CG5590-RA 1..1439 1..1439 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:38:40 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
CG5590-RA 54..1492 1..1439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:38:34 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27677575..27679013 1..1439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:38:34 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27677575..27679013 1..1439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:38:34 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27677575..27679013 1..1439 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:08:51 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23503297..23504735 1..1439 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:45 Download gff for GH01709.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27418406..27419844 1..1439 100   Plus

GH01709.hyp Sequence

Translation from 109 to 1347

> GH01709.hyp
MINTGKLAGRTLFITGASRGIGKEIALKAARDGANIVVAAKTAEPHPKLP
GTIYSAAEEIEKAGGKAYPCVVDVRDEQQVRSAVEAAVAKFGGIDIVINN
ASAISLTNTPDTDMKRYDLMHNINTRGTFLVSKVCLPYLKKSNHAHILNI
SPPLSMKPKWFGPHVAYTMAKYGMSMCVLGMAAEFKDEGISVNALWPRTA
IHTAAIEMLTGPDSAKWSRKPEIMADAAYAILTREPRQSTGQFFVDDEVL
ESAGITDLTEYACFRENADKLMVDFFVEEKGAPVENEAAAEDAAAPASGG
DVKIPQLFRKIESLLSPEIVSKTQAVFQFNISGAEQGTWFLDLKNGSGSC
GAGTPTAAPDATLTMNSKNFFDMFSGKLKAAPAYMTGKLKISGDFQKALK
LEKLMKALKSKL*

GH01709.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5590-PA 412 CG5590-PA 1..412 1..412 2109 100 Plus
Mfe2-PB 598 CG3415-PB 6..239 5..243 220 31.2 Plus
Mfe2-PA 598 CG3415-PA 6..239 5..243 220 31.2 Plus
CG3699-PA 251 CG3699-PA 3..179 7..197 209 30.4 Plus
CG12171-PA 257 CG12171-PA 7..189 10..201 196 26.9 Plus

GH01709.pep Sequence

Translation from 109 to 1347

> GH01709.pep
MINTGKLAGRTLFITGASRGIGKEIALKAARDGANIVVAAKTAEPHPKLP
GTIYSAAEEIEKAGGKAYPCVVDVRDEQQVRSAVEAAVAKFGGIDIVINN
ASAISLTNTPDTDMKRYDLMHNINTRGTFLVSKVCLPYLKKSNHAHILNI
SPPLSMKPKWFGPHVAYTMAKYGMSMCVLGMAAEFKDEGISVNALWPRTA
IHTAAIEMLTGPDSAKWSRKPEIMADAAYAILTREPRQSTGQFFVDDEVL
ESAGITDLTEYACFRENADKLMVDFFVEEKGAPVENEAAAEDAAAPASGG
DVKIPQLFRKIESLLSPEIVSKTQAVFQFNISGAEQGTWFLDLKNGSGSC
GAGTPTAAPDATLTMNSKNFFDMFSGKLKAAPAYMTGKLKISGDFQKALK
LEKLMKALKSKL*

GH01709.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16296-PA 414 GF16296-PA 1..414 1..412 1908 87.7 Plus
Dana\GF13837-PA 286 GF13837-PA 1..281 1..281 1115 72.2 Plus
Dana\GF22046-PA 251 GF22046-PA 3..187 7..202 205 30.7 Plus
Dana\GF18656-PA 256 GF18656-PA 3..184 7..197 198 28.5 Plus
Dana\GF16338-PA 257 GF16338-PA 7..193 10..202 198 29.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11567-PA 413 GG11567-PA 1..413 1..412 2040 94.4 Plus
Dere\GG17944-PA 598 GG17944-PA 4..240 3..244 215 30.8 Plus
Dere\GG12728-PA 251 GG12728-PA 3..187 7..202 204 29.6 Plus
Dere\GG12965-PA 257 GG12965-PA 7..185 10..197 195 30.5 Plus
Dere\GG12970-PA 257 GG12970-PA 7..189 10..201 191 28.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16497-PA 407 GH16497-PA 1..407 1..412 1886 85.4 Plus
Dgri\GH21466-PA 294 GH21466-PA 14..289 6..281 1147 75.4 Plus
Dgri\GH22973-PA 257 GH22973-PA 7..185 10..197 195 29.6 Plus
Dgri\GH17517-PA 257 GH17517-PA 2..189 6..201 189 26.5 Plus
Dgri\GH12482-PA 248 GH12482-PA 3..187 4..197 183 30.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5590-PA 412 CG5590-PA 1..412 1..412 2109 100 Plus
Mfe2-PB 598 CG3415-PB 6..239 5..243 220 31.2 Plus
Mfe2-PA 598 CG3415-PA 6..239 5..243 220 31.2 Plus
CG3699-PA 251 CG3699-PA 3..179 7..197 209 30.4 Plus
CG12171-PA 257 CG12171-PA 7..189 10..201 196 26.9 Plus
CG31549-PB 257 CG31549-PB 7..185 10..197 195 29.1 Plus
CG31549-PA 257 CG31549-PA 7..185 10..197 195 29.1 Plus
CG31548-PA 256 CG31548-PA 4..188 8..201 184 26.8 Plus
CG10672-PA 317 CG10672-PA 68..272 6..215 180 25.2 Plus
CG7322-PC 242 CG7322-PC 5..181 7..201 156 26.7 Plus
CG7322-PB 242 CG7322-PB 5..181 7..201 156 26.7 Plus
CG7322-PA 242 CG7322-PA 5..181 7..201 156 26.7 Plus
CG7601-PA 326 CG7601-PA 50..254 6..215 154 25.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22019-PA 418 GI22019-PA 1..418 1..412 1886 84.9 Plus
Dmoj\GI19943-PA 281 GI19943-PA 1..276 6..281 1149 75.4 Plus
Dmoj\GI22521-PA 256 GI22521-PA 2..184 6..197 199 28.5 Plus
Dmoj\GI11209-PA 596 GI11209-PA 8..239 6..244 190 28.6 Plus
Dmoj\GI10241-PA 257 GI10241-PA 7..189 10..201 185 28.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13706-PA 413 GL13706-PA 1..413 1..412 1890 87.2 Plus
Dper\GL20048-PA 286 GL20048-PA 1..281 1..281 1169 74.7 Plus
Dper\GL14417-PA 255 GL14417-PA 3..183 7..197 195 27.7 Plus
Dper\GL24511-PA 257 GL24511-PA 7..189 10..201 189 28.5 Plus
Dper\GL23021-PA 256 GL23021-PA 2..188 6..201 179 26.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18991-PA 413 GA18991-PA 1..413 1..412 1888 87.2 Plus
Dpse\GA24263-PA 286 GA24263-PA 1..281 1..281 1175 75.4 Plus
Dpse\GA17622-PA 255 GA17622-PA 3..183 7..197 195 27.7 Plus
Dpse\GA11451-PA 257 GA11451-PA 7..189 10..201 188 28.5 Plus
Dpse\GA24600-PA 63 GA24600-PA 1..51 208..258 178 68.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16349-PA 413 GM16349-PA 1..413 1..412 2132 97.1 Plus
Dsec\GM19006-PA 251 GM19006-PA 3..187 7..202 207 30.8 Plus
Dsec\GM10826-PA 257 GM10826-PA 7..189 10..201 201 29.5 Plus
Dsec\GM10825-PA 257 GM10825-PA 7..185 10..197 187 30 Plus
Dsec\GM10606-PA 256 GM10606-PA 3..184 7..197 180 27.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21345-PA 413 GD21345-PA 1..413 1..412 2125 96.9 Plus
Dsim\GD16445-PA 251 GD16445-PA 3..187 7..202 207 30.8 Plus
Dsim\GD19803-PA 257 GD19803-PA 7..189 10..201 200 29.5 Plus
Dsim\GD19595-PA 256 GD19595-PA 3..184 7..197 180 27.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10468-PA 407 GJ10468-PA 1..407 1..412 1858 85.4 Plus
Dvir\GJ17772-PA 286 GJ17772-PA 1..281 1..281 1149 73.3 Plus
Dvir\GJ18503-PA 596 GJ18503-PA 8..239 6..244 195 29 Plus
Dvir\GJ10124-PA 255 GJ10124-PA 2..203 6..219 189 25.2 Plus
Dvir\GJ10125-PA 255 GJ10125-PA 2..203 6..219 185 25.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11762-PA 408 GK11762-PA 1..408 1..412 1824 82.8 Plus
Dwil\GK21765-PA 286 GK21765-PA 1..280 1..280 1147 73.6 Plus
Dwil\GK25668-PA 595 GK25668-PA 4..238 3..244 214 30.7 Plus
Dwil\GK10169-PA 255 GK10169-PA 3..193 7..204 208 30.3 Plus
Dwil\GK13927-PA 257 GK13927-PA 7..185 10..197 202 29.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23752-PA 413 GE23752-PA 1..413 1..412 2055 95.4 Plus
Dyak\GE17252-PA 641 GE17252-PA 49..283 5..244 214 31 Plus
Dyak\GE16554-PA 251 GE16554-PA 3..187 7..202 204 29.6 Plus
Dyak\GE10146-PA 257 GE10146-PA 7..185 10..197 195 29.6 Plus
Dyak\GE24152-PA 256 GE24152-PA 3..204 7..219 194 27 Plus