Clone GH01721 Report

Search the DGRC for GH01721

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:17
Well:21
Vector:pOT2
Associated Gene/Transcriptrau-RA
Protein status:GH01721.pep: gold
Preliminary Size:2208
Sequenced Size:2217

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8965 2001-01-01 Release 2 assignment
CG8965 2001-07-04 Blastp of sequenced clone
CG8965 2003-01-01 Sim4 clustering to Release 3
CG8965 2008-04-29 Release 5.5 accounting
CG8965 2008-08-15 Release 5.9 accounting
CG8965 2008-12-18 5.12 accounting

Clone Sequence Records

GH01721.complete Sequence

2217 bp (2217 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047509

> GH01721.complete
CACTGCCGAGTGCGGTACTCAATCTACATTAGCTCCGCTCGAAAATTTCC
AATTCTTAGTGAACTGGCTAACGGTAGCGAGCCTATTCGAACGAAAGTGA
ATGTGCGTCCAGATCTAAAATAAAATTGGTACGAAAGCCAAAGGAATATA
CATATGTACAAAAAGTGAACAAATTCGGATAGAAACTCAAAGTGCAACGC
TAAAATAAAAATCAGTGCAGCTGCTTCCTGAGTGCACCTGTTTCCCCAGC
AGGGAGCACGTACGCATACGCACCTTTGGATACGCGAAGAAATGCGAAGT
GGCGTAGAGTGCTTGATAACTTAATGCCAAGCAGCCAAAGGGCCCTAAAA
GCGGCAGCCGAAGAAAAACGACGCGACCTTGTCTTGTCTTCGCACTCCGG
ACTTCTTATACCGCCATCCATCAAAGTCTCGGGCCTTAAGGTCTTGGGAT
TACACACAAATCACATTTGGATACTACAAATCATACGCTAGAAGATGCTG
AAGCACGTGCAAATCTCGCCGCTGCGAAATCGATCCGATTCGGTGTCCCT
TCGCTCCTCCAGCCACGCCTCCTCGTGCGCCAGCTCCATGTGCGGCAGTC
CGGAGCCTCCGGCGGAGCTGCAGAGAACACCCTCGAGGGCCTCCAGTTAC
TCCAGCCTCAACGAGCAGCTGCCACAGACCACAATCAAGGTGTACACAAA
CTGCCTGAAGATCGACATCGAGTACAAGACCCTTGGAATCCAGTGGGACA
CTACAAGCAAGGAGGTTATTGGCCAGCTGCTAAGACGCCTCAAGATGCGA
CATCGCGATCCACGCCTGTTCTACCTATCCATGGAGGTAGCTGTGCGTCG
GGCTGGAGTGAAGACCATCTTGGTGCTGGACGACGACACCCGGCCGGCCA
TCATGCAGGCCTGTCATCCGAAGGGCGAGTCCCGATTCTGTCTGCAGCTA
AAACCAGGTGGCCTGATCCGCGTCCACACCTCCGCGCTGCAGCCCAGCTC
TCAGTACAAGTCGCTGGTCATCAGCGAGGAGACCACCTGTGACGAGCTGC
TGCACCTGCTCCTCGGCTGTTACAGTTCACCCGAGCCGGTCGAGAACTTC
TCGCTGTACGAGGTGTGTCCCGGCCAGGAGTGTCAGCGAAAATTGCACCC
GGACGACCTTCCACTGCGCACTCAGATGGAGCGGATGAAGCGGGGCGAAG
GCTGTCACTTCCTGGTGCGCCGAACGCCCAATTACGCACGCCGGCGCCAG
CTGTTGGCCAACCTAAACGAGGCAATTGGACAGGCCGCGGAGGCGGCAGA
GGATGCAACCAGTCTCCTGGAGCTCTCCTTGGAGTCGGATCTGTCGCTCT
CCGAGGATCTGCGAAGCTGCAGCAGCAGCGAGGATGCCGAGGATGAAGAC
GAGTGTGCTAGCAGTTCTGGCTCCTCGGATAATTCCACAGAATGTGCCCT
ACGCCGGGACTTTTACGTCCACACCACGCCCGCAGCTCCTGCTCCAGTTG
TGCCCCAAGTGGCGGTGTCCGTGTCACCCGCCCGAGTCTACAGCCCCGTG
TACAACATACGCGAGATTCGAACCGCCTCGCACTCCTTCTCCTCGCTGGG
GAAGGACAAGAAGCTGCTTGACATCCACATGAACGCCCGCTTTGCGTCCG
GAGGAGTCTACGGCAGACTTATGCCTGTGGCGGAGACGGAGACCCAGGAC
ATGAACGGCAATACCAGTACCAAACTCACGGCGGAGGCCGTCAACAACAA
CCCGGCCAAGGGACTGGGACACTTTGTCTACCTGTAGCGATTGGGTCAGT
GGGAGTGGAACCTGTACAAAGGACGAGTATGCCACTAGGATCGTCTGATG
AGACCCAAAAATTAGAAAAGAAATCGAGTACCGTTTGGACCAAAGATGCA
TTTGTAGTTTAAGCCGTTAGAGTGGGAAATGTAAATAGGAAATATGCCTG
CGAGTAATGTATCCTAAGATTAGTTACGATTAGTTTAGTTTTTCCTTACG
CTACAAAAGATACTTTGTCCCTAGTGTAATGCAAAGAAACCATCTGCTAA
CAATCCCAAATGAAAGGAGTCTATAGCTTAACGCTTTAGTCCCGCAACTA
AAGCTTCGATAAGAGTATGAATCTGAATAGCTTGTGGCTAACATTCGTGT
AAAAACCAAAAGATATTGTAATAATAAGAACTAATTATGTACAACCTGAA
AAAAAAAAAAAAAAAAA

GH01721.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8965-RA 2333 CG8965-RA 60..2258 1..2199 10995 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5858820..5860231 2198..787 7060 100 Minus
chr2L 23010047 chr2L 5878039..5878532 494..1 2470 100 Minus
chr2L 23010047 chr2L 5860476..5860660 677..493 925 100 Minus
chr2L 23010047 chr2L 5860303..5860418 787..672 580 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5859768..5861180 2199..787 7065 100 Minus
2L 23513712 2L 5878988..5879481 494..1 2470 100 Minus
2L 23513712 2L 5861425..5861609 677..493 925 100 Minus
2L 23513712 2L 5861252..5861367 787..672 580 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5859768..5861180 2199..787 7065 100 Minus
2L 23513712 2L 5878988..5879481 494..1 2470 100 Minus
2L 23513712 2L 5861425..5861609 677..493 925 100 Minus
2L 23513712 2L 5861252..5861367 787..672 580 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:18:12 has no hits.

GH01721.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:19:04 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5860303..5860412 678..787 100 <- Minus
chr2L 5860476..5860658 495..677 100 <- Minus
chr2L 5858820..5860230 788..2198 100 <- Minus
chr2L 5878039..5878532 1..494 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:43:06 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 1..1293 495..1787 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:12 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 1..1293 495..1787 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:31:48 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 1..1293 495..1787 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:41 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 1..1293 495..1787 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:20 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
rau-RA 1..1293 495..1787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:43:05 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 1..2198 1..2198 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:12 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 1..2198 1..2198 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:31:48 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 18..2215 1..2198 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:42 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
CG8965-RA 1..2198 1..2198 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:20 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
rau-RA 18..2215 1..2198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:19:04 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5859769..5861179 788..2198 100 <- Minus
2L 5861252..5861361 678..787 100 <- Minus
2L 5861425..5861607 495..677 100 <- Minus
2L 5878988..5879481 1..494 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:19:04 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5859769..5861179 788..2198 100 <- Minus
2L 5861252..5861361 678..787 100 <- Minus
2L 5861425..5861607 495..677 100 <- Minus
2L 5878988..5879481 1..494 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:19:04 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5859769..5861179 788..2198 100 <- Minus
2L 5861252..5861361 678..787 100 <- Minus
2L 5861425..5861607 495..677 100 <- Minus
2L 5878988..5879481 1..494 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:31:48 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5861252..5861361 678..787 100 <- Minus
arm_2L 5861425..5861607 495..677 100 <- Minus
arm_2L 5859769..5861179 788..2198 100 <- Minus
arm_2L 5878988..5879481 1..494 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:47 Download gff for GH01721.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5859769..5861179 788..2198 100 <- Minus
2L 5861252..5861361 678..787 100 <- Minus
2L 5861425..5861607 495..677 100 <- Minus
2L 5878988..5879481 1..494 100   Minus

GH01721.hyp Sequence

Translation from 494 to 1786

> GH01721.hyp
MLKHVQISPLRNRSDSVSLRSSSHASSCASSMCGSPEPPAELQRTPSRAS
SYSSLNEQLPQTTIKVYTNCLKIDIEYKTLGIQWDTTSKEVIGQLLRRLK
MRHRDPRLFYLSMEVAVRRAGVKTILVLDDDTRPAIMQACHPKGESRFCL
QLKPGGLIRVHTSALQPSSQYKSLVISEETTCDELLHLLLGCYSSPEPVE
NFSLYEVCPGQECQRKLHPDDLPLRTQMERMKRGEGCHFLVRRTPNYARR
RQLLANLNEAIGQAAEAAEDATSLLELSLESDLSLSEDLRSCSSSEDAED
EDECASSSGSSDNSTECALRRDFYVHTTPAAPAPVVPQVAVSVSPARVYS
PVYNIREIRTASHSFSSLGKDKKLLDIHMNARFASGGVYGRLMPVAETET
QDMNGNTSTKLTAEAVNNNPAKGLGHFVYL*

GH01721.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
rau-PB 430 CG8965-PB 1..430 1..430 2213 100 Plus
rau-PA 430 CG8965-PA 1..430 1..430 2213 100 Plus

GH01721.pep Sequence

Translation from 494 to 1786

> GH01721.pep
MLKHVQISPLRNRSDSVSLRSSSHASSCASSMCGSPEPPAELQRTPSRAS
SYSSLNEQLPQTTIKVYTNCLKIDIEYKTLGIQWDTTSKEVIGQLLRRLK
MRHRDPRLFYLSMEVAVRRAGVKTILVLDDDTRPAIMQACHPKGESRFCL
QLKPGGLIRVHTSALQPSSQYKSLVISEETTCDELLHLLLGCYSSPEPVE
NFSLYEVCPGQECQRKLHPDDLPLRTQMERMKRGEGCHFLVRRTPNYARR
RQLLANLNEAIGQAAEAAEDATSLLELSLESDLSLSEDLRSCSSSEDAED
EDECASSSGSSDNSTECALRRDFYVHTTPAAPAPVVPQVAVSVSPARVYS
PVYNIREIRTASHSFSSLGKDKKLLDIHMNARFASGGVYGRLMPVAETET
QDMNGNTSTKLTAEAVNNNPAKGLGHFVYL*

GH01721.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14299-PA 436 GF14299-PA 7..436 1..430 1743 88.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24279-PA 438 GG24279-PA 9..438 1..430 2246 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10811-PA 476 GH10811-PA 13..476 1..430 1558 76.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
rau-PB 430 CG8965-PB 1..430 1..430 2213 100 Plus
rau-PA 430 CG8965-PA 1..430 1..430 2213 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17320-PA 497 GI17320-PA 17..497 1..430 1582 77 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21441-PA 457 GA21441-PA 12..457 1..430 1764 85.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17992-PA 430 GM17992-PA 1..430 1..430 2272 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22628-PA 430 GD22628-PA 1..430 1..430 2262 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15887-PA 475 GJ15887-PA 18..475 1..430 1697 79.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15415-PA 457 GK15415-PA 11..457 1..430 1825 86 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18975-PA 430 GE18975-PA 1..430 1..430 2278 99.1 Plus