Clone GH01724 Report

Search the DGRC for GH01724

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:17
Well:24
Vector:pOT2
Associated Gene/Transcriptp47-RA
Protein status:GH01724.pep: gold
Preliminary Size:1411
Sequenced Size:1422

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11139 2001-01-01 Release 2 assignment
CG11139 2001-09-19 Blastp of sequenced clone
CG11139 2003-01-01 Sim4 clustering to Release 3
p47 2008-04-29 Release 5.5 accounting
p47 2008-08-15 Release 5.9 accounting
p47 2008-12-18 5.12 accounting

Clone Sequence Records

GH01724.complete Sequence

1422 bp (1422 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058260

> GH01724.complete
CACTGGTGTGCGTTTTTTGTCAATCATTTGCTGCTGAAAATAAATTAAAA
ACACAGGTAAAATGGCCGCGCGCGGCGATTTGATTGCACAGTTCATTGAG
ATCACCGGAACCGACGAGAACGTGGCCAGGTTCTACCTGTCCAGCTGCGA
CTGGGACATCGAGCACGCGCTGGGCAACTACTGGAGCACCCAGGCGGACC
TGCCGGTTCCGGTGCCGACGGTGGGCCACGCGGACAACCCCAAACCAAAG
CCGACATCGAGCAGCGGAGCAAGTGCATCGGCATCCGCTGCTGGGGCCAC
CAAGAGTGCGGACTCAGCCGTCGCTACCTCGTCAGCTTCGGTGGACATCG
CCCCGGCAGCGACCAAGGCCAAGCCAAAATTCGCAACGCTTAGCGACATG
TCGAAGGAGTCGTCTAGTGACGATGACCAGCAGGCCTTCTATGCCGGCGG
CTCAGATCGCTCCGGTCAGCAAGTGCTGGGCCCGCCCAAGCGCAAGAACT
TCCGGGAGCAGCTCACCGACATGATGCGTTCTGCGCAGGAGCAAAACATC
GCAGAGGTGGGGCCATCAACCAGCAGCGGCAGTGCCAGCGGAGGATCTGG
CGGTGCCGTCTGGGGCCAAGGCATGCGGCTGGGCATGACCGATAATGACC
ACACGGCTGTGGGCACCAAAAAACCGGCTGCGACCATCGAAAACAAGCCG
GTGGTGGTGCTAAAGCTCTGGAGCCAGGGCTTCTCCATCGATGGCGGTGA
GCTTCGTCACTATGACGATCCGCAGAATAAGGAATTCCTAGAGACTGTCA
TGCGCGGGGAAATTCCGCAAGAGCTGCTGGAAATGGGGCGCATGGTCAAT
GTGGATGTGGAGGACCACCGCCACGAGGACTTCAAACGTCAGCCAGTTCC
GCAGACTTTTAAGGGATCGGGCCAGAAGCTGGGCAGTCCCGTGGCCAATT
TGGTCACGGAAGCGCCAACAGTTCCAGTGGCATTGTCGCCCGGTGAGGCT
GCAAACCAGGAGGCTAGTGCCCGTGATGCCATTAACTTAAATTCCGAAGC
ACCGTCCACTACGCTGCAGATTCGCCTAGCGGACGGTTCGCGTCTAGCTG
CGCAGTTTAATCTTTCGCACACCGTCTCCGACATTCGTCGTTTCATACAA
ACTGCACGCCCTCAGTACTCAACTAGTAATTTCATCCTGGTGTCCTCGTT
CCCCACTCGCGAGCTGAGCGACGACAATTCCACCATCGAGAAGGCTGGCC
TCAAGAACGCGGCACTCATGCAGCGCCTCAAGTAACTAACTATAAGTCAA
GTACGCGTATATGTGCTCTCAGCGATGGGGGGCAAAAACCTATGAAATAA
AACTGGATTTGGTGAAGTCGGGAAACCTATTCGGGCCGATCCGATGCCTA
TAATAAAAAAAAAAAAAAAAAA

GH01724.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
p47.d 1880 p47.d 602..1844 162..1404 6215 100 Plus
p47.b 1673 p47.b 395..1637 162..1404 6215 100 Plus
p47.a 1582 p47.a 143..1298 1..1156 5765 99.9 Plus
p47.a 1582 p47.a 1312..1563 1153..1404 1260 100 Plus
p47.d 1880 p47.d 350..512 1..163 815 100 Plus
p47.b 1673 p47.b 143..305 1..163 815 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3353132..3353561 808..379 2135 99.8 Minus
chr2R 21145070 chr2R 3352685..3353030 1152..807 1730 100 Minus
chr2R 21145070 chr2R 3352372..3352623 1404..1153 1245 99.6 Minus
chr2R 21145070 chr2R 3353617..3353833 378..162 1085 100 Minus
chr2R 21145070 chr2R 3353923..3354085 163..1 815 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7465778..7466207 808..379 2150 100 Minus
2R 25286936 2R 7465331..7465676 1152..807 1730 100 Minus
2R 25286936 2R 7465018..7465269 1404..1153 1260 100 Minus
2R 25286936 2R 7466263..7466479 378..162 1085 100 Minus
2R 25286936 2R 7466569..7466731 163..1 815 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7466977..7467406 808..379 2150 100 Minus
2R 25260384 2R 7466530..7466875 1152..807 1730 100 Minus
2R 25260384 2R 7466217..7466468 1404..1153 1260 100 Minus
2R 25260384 2R 7467462..7467678 378..162 1085 100 Minus
2R 25260384 2R 7467768..7467930 163..1 815 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:37:08 has no hits.

GH01724.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:37:54 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3352372..3352623 1153..1404 99 <- Minus
chr2R 3352685..3353029 808..1152 100 <- Minus
chr2R 3353133..3353561 379..807 99 <- Minus
chr2R 3353617..3353831 164..378 100 <- Minus
chr2R 3353923..3354085 1..163 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:04:51 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 1..1224 62..1285 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:33 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 1..1224 62..1285 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:54:37 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 1..1224 62..1285 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:28 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 1..1224 62..1285 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:29 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 1..1224 62..1285 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:01:45 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 1..1404 1..1404 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:33 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 1..1404 1..1404 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:54:37 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 29..1432 1..1404 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:28 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 1..1404 1..1404 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:29 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 29..1432 1..1404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:54 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7466263..7466477 164..378 100 <- Minus
2R 7466569..7466731 1..163 100   Minus
2R 7465018..7465269 1153..1404 100 <- Minus
2R 7465331..7465675 808..1152 100 <- Minus
2R 7465779..7466207 379..807 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:54 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7466263..7466477 164..378 100 <- Minus
2R 7466569..7466731 1..163 100   Minus
2R 7465018..7465269 1153..1404 100 <- Minus
2R 7465331..7465675 808..1152 100 <- Minus
2R 7465779..7466207 379..807 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:54 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7466263..7466477 164..378 100 <- Minus
2R 7466569..7466731 1..163 100   Minus
2R 7465018..7465269 1153..1404 100 <- Minus
2R 7465331..7465675 808..1152 100 <- Minus
2R 7465779..7466207 379..807 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:54:37 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3352836..3353180 808..1152 100 <- Minus
arm_2R 3352523..3352774 1153..1404 100 <- Minus
arm_2R 3353284..3353712 379..807 100 <- Minus
arm_2R 3353768..3353982 164..378 100 <- Minus
arm_2R 3354074..3354236 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:19:04 Download gff for GH01724.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7466217..7466468 1153..1404 100 <- Minus
2R 7466530..7466874 808..1152 100 <- Minus
2R 7466978..7467406 379..807 100 <- Minus
2R 7467462..7467676 164..378 100 <- Minus
2R 7467768..7467930 1..163 100   Minus

GH01724.hyp Sequence

Translation from 61 to 1284

> GH01724.hyp
MAARGDLIAQFIEITGTDENVARFYLSSCDWDIEHALGNYWSTQADLPVP
VPTVGHADNPKPKPTSSSGASASASAAGATKSADSAVATSSASVDIAPAA
TKAKPKFATLSDMSKESSSDDDQQAFYAGGSDRSGQQVLGPPKRKNFREQ
LTDMMRSAQEQNIAEVGPSTSSGSASGGSGGAVWGQGMRLGMTDNDHTAV
GTKKPAATIENKPVVVLKLWSQGFSIDGGELRHYDDPQNKEFLETVMRGE
IPQELLEMGRMVNVDVEDHRHEDFKRQPVPQTFKGSGQKLGSPVANLVTE
APTVPVALSPGEAANQEASARDAINLNSEAPSTTLQIRLADGSRLAAQFN
LSHTVSDIRRFIQTARPQYSTSNFILVSSFPTRELSDDNSTIEKAGLKNA
ALMQRLK*

GH01724.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
p47-PA 407 CG11139-PA 1..407 1..407 2072 100 Plus
CG42383-PA 353 CG4556-PA 7..335 8..406 396 29.2 Plus

GH01724.pep Sequence

Translation from 61 to 1284

> GH01724.pep
MAARGDLIAQFIEITGTDENVARFYLSSCDWDIEHALGNYWSTQADLPVP
VPTVGHADNPKPKPTSSSGASASASAAGATKSADSAVATSSASVDIAPAA
TKAKPKFATLSDMSKESSSDDDQQAFYAGGSDRSGQQVLGPPKRKNFREQ
LTDMMRSAQEQNIAEVGPSTSSGSASGGSGGAVWGQGMRLGMTDNDHTAV
GTKKPAATIENKPVVVLKLWSQGFSIDGGELRHYDDPQNKEFLETVMRGE
IPQELLEMGRMVNVDVEDHRHEDFKRQPVPQTFKGSGQKLGSPVANLVTE
APTVPVALSPGEAANQEASARDAINLNSEAPSTTLQIRLADGSRLAAQFN
LSHTVSDIRRFIQTARPQYSTSNFILVSSFPTRELSDDNSTIEKAGLKNA
ALMQRLK*

GH01724.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13680-PA 401 GF13680-PA 1..401 1..407 1735 83.7 Plus
Dana\GF11253-PA 365 GF11253-PA 136..351 183..406 384 38.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10746-PA 407 GG10746-PA 1..407 1..407 1871 95.6 Plus
Dere\GG19933-PA 353 GG19933-PA 7..335 8..406 400 29.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20600-PA 403 GH20600-PA 1..403 1..407 1609 76.9 Plus
Dgri\GH20898-PA 359 GH20898-PA 151..345 214..406 393 42 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
p47-PA 407 CG11139-PA 1..407 1..407 2072 100 Plus
CG42383-PA 353 CG4556-PA 7..335 8..406 396 29.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19799-PA 412 GI19799-PA 1..412 1..407 1607 77.9 Plus
Dmoj\GI18908-PA 365 GI18908-PA 57..351 106..406 413 34.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20122-PA 394 GL20122-PA 1..394 1..407 1529 77.2 Plus
Dper\GL20445-PA 344 GL20445-PA 113..331 183..407 409 38 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10787-PA 394 GA10787-PA 1..394 1..407 1529 77.2 Plus
Dpse\GA18254-PA 344 GA18254-PA 113..331 183..407 402 37.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20792-PA 234 GM20792-PA 1..234 1..238 1213 97.1 Plus
Dsec\GM20793-PA 150 GM20793-PA 1..150 258..407 791 100 Plus
Dsec\GM11836-PA 353 GM11836-PA 7..335 8..406 391 29 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10253-PA 192 GD10253-PA 102..192 317..407 460 98.9 Plus
Dsim\GD24956-PA 353 GD24956-PA 7..335 8..406 390 29 Plus
Dsim\GD10253-PA 192 GD10253-PA 1..63 1..63 352 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18457-PA 409 GJ18457-PA 1..409 1..407 1635 78.7 Plus
Dvir\GJ20732-PA 362 GJ20732-PA 7..350 8..406 421 29.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10707-PA 412 GK10707-PA 1..412 1..407 1557 75.8 Plus
Dwil\GK19687-PA 361 GK19687-PA 7..345 8..406 468 30.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23981-PA 407 GE23981-PA 1..407 1..407 1879 96.1 Plus
Dyak\GE11462-PA 353 GE11462-PA 7..335 8..406 398 30.2 Plus