Clone GH01729 Report

Search the DGRC for GH01729

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:17
Well:29
Vector:pOT2
Associated Gene/TranscriptCG10082-RB
Protein status:GH01729.pep: gold
Preliminary Size:2773
Sequenced Size:2813

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10082 2001-01-01 Release 2 assignment
CG10082 2001-07-04 Blastp of sequenced clone
CG10082 2003-01-01 Sim4 clustering to Release 3
CG10082 2008-04-29 Release 5.5 accounting
CG10082 2008-08-15 Release 5.9 accounting
CG10082 2008-12-18 5.12 accounting

Clone Sequence Records

GH01729.complete Sequence

2813 bp (2813 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047510

> GH01729.complete
AAAGGTTCGAGGTGCCTGCCTGACAGACCCGCTCGAGATCTGCCGCCGAA
CCAAGCAAACCTCACCGAACCGAACTGAAATGATCCGAACCGGAGTCCAG
AGAGTCCTCCTCTATCGGGATCGGAATCGGGATCGGAATCGGAATCGGAA
TCGGCATCGGCATCGGGAAAATGGGAAAGCGTTATGCCGAAAGTGTAAAG
AATTGTTTTTTTCCGCTATGAAACAAAGAAAATCGAGTTTTATTTTATGT
GTTTGTTCAGAACGCACATCGTGCCGCCCTCCTCCCCTCGAACGTTGTGT
TGTTGTGTAGTCGTCGTCGCCGTCTCCACTCCGCTCGTCTCATCTCGATC
CCTAGAGATCCTCAGTGATCAGGTCCGTCCTGCTCCGTCCTGTCGGTTAG
AATGCAGGCGAGCCAAATCGAATGGGCGTCATGCAGGCCACCACCATGGG
CGGAGCCAAGCTGGACAAGCGCTACTCGCCTAGTTTCCGGGATGACGCGG
CCGCCGTTCCCGTTCGCAAGATGAGCGCCTCCAAGAGGAAGCGGGATGAG
GTGCTGAGAATGAAGGTGCACAAGAATGGACAGGCCGCTGAAGTGATCAA
AAGCATCTCACAACTGGACAACACCAATAAGCAATACTTCCTTATGCTCG
AGAACATCACATCGCAGTTCCGCAATCCCTGCATCCTGGACCTCAAGATG
GGCACTCGTCAGCATGGAGATGATGCGTCGGCGGAGAAGCGCTCCAAGCA
GATGGCCAAGTGCGCGGCCAGCACATCCGGATCGCTCGGCGTTCGCTTGT
GCGGAATGCAGACCTACCTGGCCGATCTGGAACAGTATGCCAAGCGTGAC
AAGTACTGGGGCCGCGAGCTTAACGAGGGCGGATTCAAGACTGCGTTGCA
CGATTTCTTTCACAATGGCTACCGCCTGCGCATCCGTGTCATCCGCAAGA
TTCTGCAGCGCCTGCTCCAATTACGAAGGGTGATTGAAAAGCAGTCGAGC
TACAGATTCTACTCTTGCTCACTGCTCATTGTGTACGAGGGCTTTGAGGA
GAATCCAATGGCCCCCCCTCCCTCGATGAGTCAGGATGAGTGGCCAGAGG
CGCCCAGGTCGGCCACTGTGCCCGGCACTGTCTTCGATTATCATCCGGAG
AACAGCATAGACGAGGACGATCTGGAGGATGACGACGAGGCAGGCAACGA
GGCTGGCGATGAGCTGGAGGCGCACGACACCGACGATGATCTGCATCTGG
TGGCCGCCGACAGTGGCAACGCTTCGGCGACGAACAGCAGCACAGGAGGA
GATGCCTGCAACTACGATGCAGATGCCTCCAACGATTCTAACTCATTGCT
GAACCTGGCTACCAGACGTCACCTGCACAAGCGTGGATTTGCAGAGGCAG
CGGCGCGAGGAGTTAAGCAGACGGCATCCCACAATACCACTACCGATGAG
GAGGAGGAGGATGAGCACCCGGCTATGCCACCGCCTCGGACTTGTGGTGT
TATGGCCGCCAAAGCGGCAGCCGCTGCCGCTGGCCTGGCCGGAAAGGGCC
AGGGAGCATTCATTCCAATCTCCGAAGAGACAGTATTTCTGGACCCAGAG
CCAGCGCTGCCCAGCGTGACGACTTCATCGCCACATTCCGGTGACTCATG
GATGAACTATAGCAGCAACAGCAGCGACGACTTCTCCGGATTATCCGAGC
AGATAAAGGCTGTGGCCAGTGGGCGGCAGACATGCAATAACAGCAGTGAT
GACGCAAGTTCAGATTACGAAAGCAGTATCATTGGGCCAACGGAGGCTAT
GTTTAAGCGATATAAGTCTCAGCAATCTTTTGACGCCGCCACAGCTGCCG
ACTCTGCGTCCTCCCCGCCACTCACTGCCGGAAACTCGAGCGTTTCCAAT
GGCGGCACCACAGTCCGTTCACTGGTTTCGCCCGCTTCATCCAGCGCCTC
CTCTCTGAAATCGGTCAAGGGTGCAGTGAAGCGGCTACGATGCAATGATG
ATGATCAGCAGTCTGCGAGCCTGGGGGAATCGGATTTGCGAGAAGCGAAG
AAGTCGACGATCACTTCGACACCCGTTTCGGCCGTATCCTCGCCAGCTAA
GGCAGCCCCACAACTGCGCAGCTGTGAGAGTATCTCAAACCAGCAATCTC
TGCTGTCGGGCCTGCTCCTGGATAATAACAATGAGCAGCGTCGCAATGCA
CTTCTGCAGCAAAGCTCAAAGTCGCTGGACATGTCGGCACCGCCCACTGA
TGATAACCAGTGCTTCGTGGACGTCCGGCTCATCGACTTTGCCCACACGG
CATTCGTGCCGCGCAATGGCACCATGCTACCCACTCCGGCGGCAGCTCCG
GTGCACCATGGACCCGACGGGGGATTCCTTACCGGTCTGGATAGCCTCAA
CCGCCTGCTCAACGAAATTGTGGCCGAGGAACGCGCCTAAGCTCGCTATA
GAAACCACATCGGGAGAAAAGAATATGAATATATATATGGGGCAACTGGG
CGGGAACACACAAGTTAAAAGTACAATTTGATTTCAGAATACCTAAATTG
TTGTAGCAACATGAGTTAAATTATGAAACAAAATCAACTTATCTTTAGAA
ATTCAAAATGTGATTCAAGCAAACCTATTTAACAACCGGATATAGACCTT
AACTTTTAACTTTTAACCGACGCGTAACGTTAAGTAAAAGGGCGGAGCGT
GTTTCCCCCGATTAATCGCAGCATTTGTGGAGAACCAGGAGCGGAGAATT
TAAAATTAATTTGTAAACAAGTCGCTTCCAAAAGTAGATGAAAGTAAAAA
AAAAAAAAAAAAA

GH01729.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10082.b 3797 CG10082.b 457..3262 1..2806 14030 100 Plus
CG10082-RB 3073 CG10082-RB 268..3073 1..2806 14030 100 Plus
CG10082.c 3608 CG10082.c 268..3073 1..2806 14030 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17542808..17543869 1734..2795 5220 99.4 Plus
chr2R 21145070 chr2R 17542028..17542749 1013..1734 3535 99.3 Plus
chr2R 21145070 chr2R 17540081..17540500 1..426 2005 98.6 Plus
chr2R 21145070 chr2R 17541562..17541943 636..1017 1880 99.5 Plus
chr2R 21145070 chr2R 17541215..17541348 425..558 670 100 Plus
chr2R 21145070 chr2R 17541409..17541487 557..635 395 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21656367..21657439 1734..2806 5365 100 Plus
2R 25286936 2R 21655591..21656308 1017..1734 3590 100 Plus
2R 25286936 2R 21653639..21654064 1..426 2130 100 Plus
2R 25286936 2R 21655121..21655502 636..1017 1910 100 Plus
2R 25286936 2R 21654774..21654907 425..558 670 100 Plus
2R 25286936 2R 21654968..21655046 557..635 395 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21657566..21658638 1734..2806 5365 100 Plus
2R 25260384 2R 21656790..21657507 1017..1734 3590 100 Plus
2R 25260384 2R 21654838..21655263 1..426 2130 100 Plus
2R 25260384 2R 21656320..21656701 636..1017 1910 100 Plus
2R 25260384 2R 21655973..21656106 425..558 670 100 Plus
2R 25260384 2R 21656167..21656245 557..635 395 100 Plus
Blast to na_te.dros performed 2019-03-16 03:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 2675..2787 2515..2634 177 66.9 Plus

GH01729.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:20:05 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17541216..17541348 426..558 100 -> Plus
chr2R 17541411..17541487 559..635 100 -> Plus
chr2R 17540243..17540499 169..425 100 -> Plus
chr2R 17541562..17541943 636..1017 99 -> Plus
chr2R 17542033..17542748 1018..1733 99 -> Plus
chr2R 17542808..17543869 1734..2795 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:04:52 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 1..2019 422..2440 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:14 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 1..2019 422..2440 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:06 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 1..2019 422..2440 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:43 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 1..2019 422..2440 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:35:40 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 1..2019 422..2440 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:58 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 1..2795 1..2795 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:13 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 1..2795 1..2795 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:06 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 1..2795 1..2795 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:43 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 1..2795 1..2795 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:35:40 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
CG10082-RB 1..2795 1..2795 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:20:05 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21653639..21654063 1..425 100 -> Plus
2R 21654775..21654907 426..558 100 -> Plus
2R 21654970..21655046 559..635 100 -> Plus
2R 21655121..21655502 636..1017 100 -> Plus
2R 21655592..21656307 1018..1733 100 -> Plus
2R 21656367..21657428 1734..2795 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:20:05 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21653639..21654063 1..425 100 -> Plus
2R 21654775..21654907 426..558 100 -> Plus
2R 21654970..21655046 559..635 100 -> Plus
2R 21655121..21655502 636..1017 100 -> Plus
2R 21655592..21656307 1018..1733 100 -> Plus
2R 21656367..21657428 1734..2795 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:20:05 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21653639..21654063 1..425 100 -> Plus
2R 21654775..21654907 426..558 100 -> Plus
2R 21654970..21655046 559..635 100 -> Plus
2R 21655121..21655502 636..1017 100 -> Plus
2R 21655592..21656307 1018..1733 100 -> Plus
2R 21656367..21657428 1734..2795 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:06 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17541144..17541568 1..425 100 -> Plus
arm_2R 17542280..17542412 426..558 100 -> Plus
arm_2R 17542475..17542551 559..635 100 -> Plus
arm_2R 17542626..17543007 636..1017 100 -> Plus
arm_2R 17543097..17543812 1018..1733 100 -> Plus
arm_2R 17543872..17544933 1734..2795 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:48 Download gff for GH01729.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21654838..21655262 1..425 100 -> Plus
2R 21655974..21656106 426..558 100 -> Plus
2R 21656169..21656245 559..635 100 -> Plus
2R 21656320..21656701 636..1017 100 -> Plus
2R 21656791..21657506 1018..1733 100 -> Plus
2R 21657566..21658627 1734..2795 100   Plus

GH01729.pep Sequence

Translation from 421 to 2439

> GH01729.pep
MGVMQATTMGGAKLDKRYSPSFRDDAAAVPVRKMSASKRKRDEVLRMKVH
KNGQAAEVIKSISQLDNTNKQYFLMLENITSQFRNPCILDLKMGTRQHGD
DASAEKRSKQMAKCAASTSGSLGVRLCGMQTYLADLEQYAKRDKYWGREL
NEGGFKTALHDFFHNGYRLRIRVIRKILQRLLQLRRVIEKQSSYRFYSCS
LLIVYEGFEENPMAPPPSMSQDEWPEAPRSATVPGTVFDYHPENSIDEDD
LEDDDEAGNEAGDELEAHDTDDDLHLVAADSGNASATNSSTGGDACNYDA
DASNDSNSLLNLATRRHLHKRGFAEAAARGVKQTASHNTTTDEEEEDEHP
AMPPPRTCGVMAAKAAAAAAGLAGKGQGAFIPISEETVFLDPEPALPSVT
TSSPHSGDSWMNYSSNSSDDFSGLSEQIKAVASGRQTCNNSSDDASSDYE
SSIIGPTEAMFKRYKSQQSFDAATAADSASSPPLTAGNSSVSNGGTTVRS
LVSPASSSASSLKSVKGAVKRLRCNDDDQQSASLGESDLREAKKSTITST
PVSAVSSPAKAAPQLRSCESISNQQSLLSGLLLDNNNEQRRNALLQQSSK
SLDMSAPPTDDNQCFVDVRLIDFAHTAFVPRNGTMLPTPAAAPVHHGPDG
GFLTGLDSLNRLLNEIVAEERA*

GH01729.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13255-PA 907 GF13255-PA 225..906 2..671 2807 86.3 Plus
Dana\GF14878-PA 324 GF14878-PA 92..256 53..206 158 28.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22124-PA 890 GG22124-PA 220..890 2..672 3548 98.1 Plus
Dere\GG24638-PA 311 GG24638-PA 80..244 53..206 165 28.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22738-PA 985 GH22738-PA 257..983 2..670 2546 74.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10082-PB 672 CG10082-PB 1..672 1..672 3446 100 Plus
CG10082-PA 902 CG10082-PA 232..902 2..672 3441 100 Plus
Ipk2-PA 309 CG13688-PA 94..252 67..217 168 30.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18522-PA 962 GI18522-PA 253..954 2..670 2597 78.5 Plus
Dmoj\GI18022-PA 341 GI18022-PA 107..268 55..210 184 31.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10797-PA 814 GL10797-PA 120..813 2..671 2751 80.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24492-PA 953 GA24492-PA 284..952 2..671 2783 83.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15848-PA 897 GM15848-PA 227..897 2..672 3588 99.7 Plus
Dsec\GM16655-PA 348 GM16655-PA 117..289 53..217 169 28.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11610-PA 901 GD11610-PA 231..901 2..672 3574 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21386-PA 935 GJ21386-PA 254..933 2..670 2701 80.6 Plus
Dvir\GJ19687-PA 344 GJ19687-PA 112..273 55..210 181 31.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19565-PA 977 GK19565-PA 268..976 2..671 2593 76 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12208-PA 898 GE12208-PA 228..897 2..671 3562 98.4 Plus
Dyak\GE16007-PA 311 GE16007-PA 94..244 67..206 168 30.3 Plus

GH01729.hyp Sequence

Translation from 421 to 2439

> GH01729.hyp
MGVMQATTMGGAKLDKRYSPSFRDDAAAVPVRKMSASKRKRDEVLRMKVH
KNGQAAEVIKSISQLDNTNKQYFLMLENITSQFRNPCILDLKMGTRQHGD
DASAEKRSKQMAKCAASTSGSLGVRLCGMQTYLADLEQYAKRDKYWGREL
NEGGFKTALHDFFHNGYRLRIRVIRKILQRLLQLRRVIEKQSSYRFYSCS
LLIVYEGFEENPMAPPPSMSQDEWPEAPRSATVPGTVFDYHPENSIDEDD
LEDDDEAGNEAGDELEAHDTDDDLHLVAADSGNASATNSSTGGDACNYDA
DASNDSNSLLNLATRRHLHKRGFAEAAARGVKQTASHNTTTDEEEEDEHP
AMPPPRTCGVMAAKAAAAAAGLAGKGQGAFIPISEETVFLDPEPALPSVT
TSSPHSGDSWMNYSSNSSDDFSGLSEQIKAVASGRQTCNNSSDDASSDYE
SSIIGPTEAMFKRYKSQQSFDAATAADSASSPPLTAGNSSVSNGGTTVRS
LVSPASSSASSLKSVKGAVKRLRCNDDDQQSASLGESDLREAKKSTITST
PVSAVSSPAKAAPQLRSCESISNQQSLLSGLLLDNNNEQRRNALLQQSSK
SLDMSAPPTDDNQCFVDVRLIDFAHTAFVPRNGTMLPTPAAAPVHHGPDG
GFLTGLDSLNRLLNEIVAEERA*

GH01729.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10082-PB 672 CG10082-PB 1..672 1..672 3446 100 Plus
CG10082-PA 902 CG10082-PA 232..902 2..672 3441 100 Plus
Ipk2-PA 309 CG13688-PA 94..252 67..217 168 30.1 Plus