Clone GH01788 Report

Search the DGRC for GH01788

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:17
Well:88
Vector:pOT2
Associated Gene/TranscriptCG10589-RA
Protein status:GH01788.pep: gold
Preliminary Size:1450
Sequenced Size:1399

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10589 2001-01-01 Release 2 assignment
CG10589 2001-09-19 Blastp of sequenced clone
CG10589 2003-01-01 Sim4 clustering to Release 3
CG10589 2008-04-29 Release 5.5 accounting
CG10589 2008-08-15 Release 5.9 accounting
CG10589 2008-12-18 5.12 accounting

Clone Sequence Records

GH01788.complete Sequence

1399 bp (1399 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058263

> GH01788.complete
ATCGTCGAAGTGACAGAACCACCTGGAAAACAGTATCAGAGTTAAACACA
TTCGAATTCGAGTTCACTCAAACTAAAATTCTTATATTTCTTTTACTATA
TTTGAACAATTAAAAACGTGCAAAAATGCCAGCTCATTTGGATTTAACCC
TAGAGGAAATGACCAGGATTGCTTTGGGTGTGCCCGAGTTAACCCACGTA
AATGTGGCTGTACTCCAAAGTCTTTTGAATGTCCTTCTCAAGAAACTGAA
CTGTCAGAATGATATGGTAAGGATAAGTGGCTTCGAGGGCAAGTGTATGG
AGCGCATTCTCGAGCAATCCAAAATATCTCCACTGCCCTTCGACGTGGAG
GCTATTGTTCCAATTTCCGAGCAATTGGATAAAGTTCAAGAGTTGGACAA
ACGCATCAAGCAGCTGGAGTGCAAGTTGGAGTGTCACTTTCAGCAGATTC
GCATTTGCAACAAGGCCAAGGACAAGAAGTACAAGATCAACCAGGCCGAA
CAGTACGCCTCTCCTTGCGAGGATCTGTGCACCGTTTGCGATGAGGACAA
CAAGATCGCATGCAGTCTGCTGGCCAACATGGACTTCATGAAAAAGCTAA
TGCGACGTATAGCCACACCCATTCTGGACCGAATGGAAGAGGTCAGCCAC
AAGCTGGAGAAGTTCTACCTCACACTTGAGGCTTTTCTTAAGCAAACCGA
AGCTTTATTTAATCGTTTGGAAATAGTCAAGCAATGTGTGGTGGAGATCG
AAGGTCTGAGGACTCTTGTTCAGGAATACAACCTTACTTTTCTGGGAACC
ATGGAGGAACTGCAGGATATGCTCGACAGCAAGCTGGATAAGGTGCATAT
GCCTGCTCTTAAGAAGTATATACGCGATCGCTTCGATGATATAGATCGCC
GGCTGAGATTGATTGAGGATAAGGATGCATGTCCCAGGGCCGCTGGATTT
ATCAATACGGGGCTATCTTGTCTATCCTGTAATAGTCCCAAAGTGGGTGT
CGACGTCGGTCCTCAAACCATGGGACTATTCCCGGACGCTCCGGTCAGGC
ACCTGCCTCCCAAGTTAACCGGATCACCGGTAAATTGTCAGAAGATCGTG
GTCTGTAGATCTGTGGAGAAGGAACCTACCCTAATGGTGCGAGTAAACAA
CCTTGATCTGAGTGTCCTCTCCCAACGTCTTGCTCGTCCTGCCTCTGGCA
AAGTCTGCAAGTTGCCCGAAGCTAATGACGCCATCTATGGCGTTCGTAAT
TCCTGTATATCCGGTCAGGACCACTACCCAGTATAACTTACAGCTAGTCG
CCATCCAAATCGATTAGTTTCCGCAATAAAGAATACAACTCAAGGCTGTG
TCCGTTAAGCCGCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH01788.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10589-RA 1519 CG10589-RA 1..1372 1..1372 6845 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20916830..20918194 1..1365 6825 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20927826..20929197 1..1372 6845 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20920926..20922297 1..1372 6845 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 03:23:03 has no hits.

GH01788.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:23:40 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20916830..20918194 1..1365 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:05:03 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
CG10589-RA 1..1161 126..1286 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:35 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
CG10589-RA 1..1161 126..1286 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:48 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
CG10589-RA 1..1161 126..1286 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:30 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
CG10589-RA 1..1161 126..1286 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:37:09 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
CG10589-RA 1..1161 126..1286 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:01:47 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
CG10589-RA 1..1365 1..1365 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:35 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
CG10589-RA 1..1365 1..1365 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:48 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
CG10589-RA 1..1365 1..1365 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:30 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
CG10589-RA 1..1365 1..1365 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:37:09 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
CG10589-RA 1..1365 1..1365 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:40 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20927826..20929190 1..1365 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:40 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20927826..20929190 1..1365 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:40 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20927826..20929190 1..1365 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:48 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20920926..20922290 1..1365 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:19:06 Download gff for GH01788.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20920926..20922290 1..1365 100   Plus

GH01788.hyp Sequence

Translation from 125 to 1285

> GH01788.hyp
MPAHLDLTLEEMTRIALGVPELTHVNVAVLQSLLNVLLKKLNCQNDMVRI
SGFEGKCMERILEQSKISPLPFDVEAIVPISEQLDKVQELDKRIKQLECK
LECHFQQIRICNKAKDKKYKINQAEQYASPCEDLCTVCDEDNKIACSLLA
NMDFMKKLMRRIATPILDRMEEVSHKLEKFYLTLEAFLKQTEALFNRLEI
VKQCVVEIEGLRTLVQEYNLTFLGTMEELQDMLDSKLDKVHMPALKKYIR
DRFDDIDRRLRLIEDKDACPRAAGFINTGLSCLSCNSPKVGVDVGPQTMG
LFPDAPVRHLPPKLTGSPVNCQKIVVCRSVEKEPTLMVRVNNLDLSVLSQ
RLARPASGKVCKLPEANDAIYGVRNSCISGQDHYPV*

GH01788.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10589-PA 386 CG10589-PA 1..386 1..386 1999 100 Plus

GH01788.pep Sequence

Translation from 125 to 1285

> GH01788.pep
MPAHLDLTLEEMTRIALGVPELTHVNVAVLQSLLNVLLKKLNCQNDMVRI
SGFEGKCMERILEQSKISPLPFDVEAIVPISEQLDKVQELDKRIKQLECK
LECHFQQIRICNKAKDKKYKINQAEQYASPCEDLCTVCDEDNKIACSLLA
NMDFMKKLMRRIATPILDRMEEVSHKLEKFYLTLEAFLKQTEALFNRLEI
VKQCVVEIEGLRTLVQEYNLTFLGTMEELQDMLDSKLDKVHMPALKKYIR
DRFDDIDRRLRLIEDKDACPRAAGFINTGLSCLSCNSPKVGVDVGPQTMG
LFPDAPVRHLPPKLTGSPVNCQKIVVCRSVEKEPTLMVRVNNLDLSVLSQ
RLARPASGKVCKLPEANDAIYGVRNSCISGQDHYPV*

GH01788.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24290-PA 377 GF24290-PA 1..377 1..380 1647 85 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16149-PA 381 GG16149-PA 1..380 1..380 1779 94.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15914-PA 369 GH15914-PA 1..366 5..376 1365 68 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10589-PA 386 CG10589-PA 1..386 1..386 1999 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16567-PA 373 GI16567-PA 1..372 5..379 1371 68.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24429-PA 379 GL24429-PA 1..379 1..380 1453 73.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10418-PA 379 GA10418-PA 1..379 1..380 1453 73.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22332-PA 383 GM22332-PA 1..383 1..383 1986 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14921-PA 337 GD14921-PA 1..337 47..383 1754 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12819-PA 373 GJ12819-PA 1..373 5..380 1386 68.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25376-PA 380 GK25376-PA 1..380 1..380 1572 75.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19719-PA 380 GE19719-PA 1..380 1..380 1856 95.5 Plus
Dyak\GE23060-PA 241 GE23060-PA 1..239 1..239 1193 95.4 Plus