BDGP Sequence Production Resources |
Search the DGRC for GH01794
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 17 |
Well: | 94 |
Vector: | pOT2 |
Associated Gene/Transcript | Rcd5-RA |
Protein status: | GH01794.pep: gold |
Preliminary Size: | 1905 |
Sequenced Size: | 1926 |
Gene | Date | Evidence |
---|---|---|
CG1135 | 2001-01-01 | Release 2 assignment |
CG1135 | 2001-10-10 | Blastp of sequenced clone |
CG1135 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1135 | 2008-04-29 | Release 5.5 accounting |
CG1135 | 2008-08-15 | Release 5.9 accounting |
CG1135 | 2008-12-18 | 5.12 accounting |
1926 bp (1926 high quality bases) assembled on 2001-10-10
GenBank Submission: AY060599
> GH01794.complete AGCTGTGCGTCGCGAAAATAAATACATTTTAGCCCATAAACAGCCCGCTA GAGCGATGGAGGCATCAAGAATAACCGCGATCGCCAGCAGTGCAGTGTCC GTTACCGCTCCCAATCCCCCCACAGTGTCCACCATTCCCACAGCAGCTGC GAGCACACTAATCCAGGTAGGCGTGTCGCCAGCAACAACAACCATGCCAA CACCAGCAGCCACAACAACAACAACCACAATAGGAAGTACAGCTAGCAGT GCCGTTGGAATTTCAACGCCGATACGAAATCCCATTTCAAATCTGCAGAT AGAACAGCAAAACGATCAAAAGCGAAGAAGTTCATCGCGGACGATTAAAA GGAAGCGTTTTGATGACGAAATAGTTGAGTACAACATTGCGGTGCCCACA AATCGCAGCGGAACAGACGCCAATCGCAGCAGCAGGCCTCGCACCACCTC CCAGAATTATCCAGCTTTGGTGGGCGTGCCGCACACCACGTTAGCGCCTC TTAACATACCCACTTCCACGCCACAGACGCCGCTTTCAGTTGATTCCCTG CTGCCGGGGACACCTAGCACTGTTGCATCGCTGTCACTGGCCACGCCCAC AACGCCAGCTCCCTTGGCCACTCCCCTTCCAGTTGCCCCAATTGTGACTG CCGTCGCGCATCCCAAACCACCGGCCATGGAGCGCTCCACGACCAGCGAG CGCCGTTCGCGCCCAGTGCGTCCTGCCAGCAAAAAGGCGCAGCGTAGAAA TGGTCGTCCCATGGGTCAGATGGCCACCAAGGATTTGGGCCGCTGGAAGC CCATTGACGACTTGGCCCTCATAATTGGCATCCAGCAGACCAACGATCTG CGGATAATCCATCGCGGCGTTAAGTTTTCCTGCAAGTTTACTCTGCAGGA ACTACAGCAGCGCTGGTATGCTCTGCTGTATGAGCCTGCGGTGTCCAGGA TTGCAGTGTCCGCCATAAGGAACCTGCACCCCGAACTCGTGGAGTCCGTT CAGCGCAAAGCTTTGTACAGCGTGCAGGAGGAGGATCTGCTTGGCACCAT TAAGAGCTCGGAACAACCAAAACTTGAGCAGTTCCAGGAGCTACTGGATA AGAATGCCTCCGTTTTCTACTGCGCCCGCACTGCCAAATCCTTGCAAAAC CATTGGCTTCTTCTCAAGCAGTACACCCTGTTGCCGGATCAGTCAGTGAA GCCTATATATGGCACGGATCAGCAGCCACTCAGCTTCTCGGATGCAGAAG ATCAAATCTTCGAGCACGACCTGAACGAGCCACGTGACGAAGCTCTCGAG ATGGAGCGAGCTCTGGCAGATCGTCGCAACAAACGTAATATTCGCCTGCT GGAGAACGAGCTCTCGCGCTGGGCCGTCCTGGTGGATTCCGTGCTTAGTC CGACCGCTGCCTCCGAGTTCGACAACCAGACACTGGCCTGCTTGTGTGGC CGCCATGTGCGGTACCTAATGCGTTCCAAGGAAATAACATTTGGTCGCGA TGCCAAGGACTGTGTGGTGGACGTGGATCTGGGGCTCGAGGGACCGGCTG CGAAGATCTCTCGCCGCCAAGGAACCATTAAGCTGCGCAGCAATGGGGAT TTCTTCATCGCTAACGAGGGAAAGAGGGCCATCTTTATCGACGGCACTCC TTTGCTATCCGCCAACAAAGCTCGACTCGGTCACAACTGCACAGTGGAAA TATCCGGTCTGCGCTTCACCTTCCTGGTCAACTACGAGCTGATCAACGCC ATCCGCCAGGAGAGCGCCAAGACATCGAATCCCCTCAACTAGTTGCGATC AGAGCAGGCTGGCTGCGAGTGTTTAATATATTCTAGTACTTAGTAAACCC CAAAAAAACAAACTTCTGAAATAAAAAGCATATGGACATATGTATAAATC ATAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rcd5.b | 2094 | Rcd5.b | 143..2047 | 1..1905 | 9525 | 100 | Plus |
Rcd5-RA | 2033 | Rcd5-RA | 82..1986 | 1..1905 | 9525 | 100 | Plus |
Rcd5.a | 1987 | Rcd5.a | 611..1987 | 526..1902 | 6885 | 100 | Plus |
Rcd5.a | 1987 | Rcd5.a | 143..611 | 1..469 | 2345 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 4041139..4041983 | 1058..1902 | 4225 | 100 | Plus |
chr3L | 24539361 | chr3L | 4040351..4041079 | 329..1057 | 3645 | 100 | Plus |
chr3L | 24539361 | chr3L | 4039960..4040289 | 1..330 | 1650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 4041753..4042600 | 1058..1905 | 4240 | 100 | Plus |
3L | 28103327 | 3L | 4040965..4041693 | 329..1057 | 3645 | 100 | Plus |
3L | 28103327 | 3L | 4040574..4040903 | 1..330 | 1650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
frogger | 2483 | frogger FROGGER 2483bp | 1861..1948 | 327..239 | 118 | 60.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 4039960..4040138 | 1..179 | 100 | == | Plus |
chr3L | 4040190..4040289 | 231..330 | 100 | -> | Plus |
chr3L | 4040353..4041079 | 331..1057 | 100 | -> | Plus |
chr3L | 4041139..4041973 | 1058..1892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1135-RA | 1..1737 | 56..1792 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd5-RA | 1..1737 | 56..1792 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd5-RA | 1..1737 | 56..1792 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1135-RA | 1..1737 | 56..1792 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd5-RA | 1..1737 | 56..1792 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1135-RA | 41..1942 | 1..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd5-RA | 41..1942 | 1..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd5-RA | 46..1947 | 1..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1135-RA | 41..1942 | 1..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd5-RA | 46..1947 | 1..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4040574..4040903 | 1..330 | 100 | -> | Plus |
3L | 4040967..4041693 | 331..1057 | 100 | -> | Plus |
3L | 4041753..4042597 | 1058..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4040574..4040903 | 1..330 | 100 | -> | Plus |
3L | 4040967..4041693 | 331..1057 | 100 | -> | Plus |
3L | 4041753..4042597 | 1058..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4040574..4040903 | 1..330 | 100 | -> | Plus |
3L | 4040967..4041693 | 331..1057 | 100 | -> | Plus |
3L | 4041753..4042597 | 1058..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 4040574..4040903 | 1..330 | 100 | -> | Plus |
arm_3L | 4040967..4041693 | 331..1057 | 100 | -> | Plus |
arm_3L | 4041753..4042597 | 1058..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4040574..4040903 | 1..330 | 100 | -> | Plus |
3L | 4040967..4041693 | 331..1057 | 100 | -> | Plus |
3L | 4041753..4042597 | 1058..1902 | 100 | Plus |
Translation from 1 to 1791
> GH01794.hyp AVRRENKYILAHKQPARAMEASRITAIASSAVSVTAPNPPTVSTIPTAAA STLIQVGVSPATTTMPTPAATTTTTTIGSTASSAVGISTPIRNPISNLQI EQQNDQKRRSSSRTIKRKRFDDEIVEYNIAVPTNRSGTDANRSSRPRTTS QNYPALVGVPHTTLAPLNIPTSTPQTPLSVDSLLPGTPSTVASLSLATPT TPAPLATPLPVAPIVTAVAHPKPPAMERSTTSERRSRPVRPASKKAQRRN GRPMGQMATKDLGRWKPIDDLALIIGIQQTNDLRIIHRGVKFSCKFTLQE LQQRWYALLYEPAVSRIAVSAIRNLHPELVESVQRKALYSVQEEDLLGTI KSSEQPKLEQFQELLDKNASVFYCARTAKSLQNHWLLLKQYTLLPDQSVK PIYGTDQQPLSFSDAEDQIFEHDLNEPRDEALEMERALADRRNKRNIRLL ENELSRWAVLVDSVLSPTAASEFDNQTLACLCGRHVRYLMRSKEITFGRD AKDCVVDVDLGLEGPAAKISRRQGTIKLRSNGDFFIANEGKRAIFIDGTP LLSANKARLGHNCTVEISGLRFTFLVNYELINAIRQESAKTSNPLN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rcd5-PA | 578 | CG1135-PA | 1..578 | 19..596 | 2928 | 100 | Plus |
Translation from 55 to 1791
> GH01794.pep MEASRITAIASSAVSVTAPNPPTVSTIPTAAASTLIQVGVSPATTTMPTP AATTTTTTIGSTASSAVGISTPIRNPISNLQIEQQNDQKRRSSSRTIKRK RFDDEIVEYNIAVPTNRSGTDANRSSRPRTTSQNYPALVGVPHTTLAPLN IPTSTPQTPLSVDSLLPGTPSTVASLSLATPTTPAPLATPLPVAPIVTAV AHPKPPAMERSTTSERRSRPVRPASKKAQRRNGRPMGQMATKDLGRWKPI DDLALIIGIQQTNDLRIIHRGVKFSCKFTLQELQQRWYALLYEPAVSRIA VSAIRNLHPELVESVQRKALYSVQEEDLLGTIKSSEQPKLEQFQELLDKN ASVFYCARTAKSLQNHWLLLKQYTLLPDQSVKPIYGTDQQPLSFSDAEDQ IFEHDLNEPRDEALEMERALADRRNKRNIRLLENELSRWAVLVDSVLSPT AASEFDNQTLACLCGRHVRYLMRSKEITFGRDAKDCVVDVDLGLEGPAAK ISRRQGTIKLRSNGDFFIANEGKRAIFIDGTPLLSANKARLGHNCTVEIS GLRFTFLVNYELINAIRQESAKTSNPLN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10092-PA | 583 | GF10092-PA | 1..583 | 1..578 | 2437 | 82.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15185-PA | 581 | GG15185-PA | 1..581 | 1..578 | 2777 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14562-PA | 584 | GH14562-PA | 69..584 | 74..578 | 2016 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rcd5-PA | 578 | CG1135-PA | 1..578 | 1..578 | 2928 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13885-PA | 558 | GI13885-PA | 46..558 | 74..578 | 1984 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17030-PA | 547 | GL17030-PA | 42..547 | 72..578 | 1977 | 75 | Plus |
Dper\GL18699-PA | 387 | GL18699-PA | 52..386 | 244..577 | 1110 | 63.4 | Plus |
Dper\GL22205-PA | 388 | GL22205-PA | 45..387 | 230..577 | 933 | 52.8 | Plus |
Dper\GL14975-PA | 379 | GL14975-PA | 22..378 | 219..577 | 840 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10939-PA | 582 | GA10939-PA | 77..582 | 72..578 | 1976 | 75 | Plus |
Dpse\GA25761-PA | 387 | GA25761-PA | 52..386 | 244..577 | 1110 | 63.4 | Plus |
Dpse\GA27414-PA | 388 | GA27414-PA | 45..387 | 230..577 | 929 | 52.6 | Plus |
Dpse\GA22377-PA | 379 | GA22377-PA | 22..378 | 219..577 | 819 | 48.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14616-PA | 578 | GM14616-PA | 1..578 | 1..578 | 3002 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13805-PA | 552 | GD13805-PA | 1..552 | 1..578 | 2838 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11739-PA | 559 | GJ11739-PA | 51..559 | 77..578 | 2036 | 77 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17772-PA | 580 | GK17772-PA | 16..580 | 28..578 | 2037 | 71.5 | Plus |
Dwil\GK17773-PA | 542 | GK17773-PA | 1..541 | 1..577 | 1579 | 58.5 | Plus |
Dwil\GK22928-PA | 359 | GK22928-PA | 4..358 | 215..577 | 1420 | 76 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21404-PA | 579 | GE21404-PA | 1..579 | 1..578 | 2742 | 93.8 | Plus |