Clone GH01794 Report

Search the DGRC for GH01794

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:17
Well:94
Vector:pOT2
Associated Gene/TranscriptRcd5-RA
Protein status:GH01794.pep: gold
Preliminary Size:1905
Sequenced Size:1926

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1135 2001-01-01 Release 2 assignment
CG1135 2001-10-10 Blastp of sequenced clone
CG1135 2003-01-01 Sim4 clustering to Release 3
CG1135 2008-04-29 Release 5.5 accounting
CG1135 2008-08-15 Release 5.9 accounting
CG1135 2008-12-18 5.12 accounting

Clone Sequence Records

GH01794.complete Sequence

1926 bp (1926 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060599

> GH01794.complete
AGCTGTGCGTCGCGAAAATAAATACATTTTAGCCCATAAACAGCCCGCTA
GAGCGATGGAGGCATCAAGAATAACCGCGATCGCCAGCAGTGCAGTGTCC
GTTACCGCTCCCAATCCCCCCACAGTGTCCACCATTCCCACAGCAGCTGC
GAGCACACTAATCCAGGTAGGCGTGTCGCCAGCAACAACAACCATGCCAA
CACCAGCAGCCACAACAACAACAACCACAATAGGAAGTACAGCTAGCAGT
GCCGTTGGAATTTCAACGCCGATACGAAATCCCATTTCAAATCTGCAGAT
AGAACAGCAAAACGATCAAAAGCGAAGAAGTTCATCGCGGACGATTAAAA
GGAAGCGTTTTGATGACGAAATAGTTGAGTACAACATTGCGGTGCCCACA
AATCGCAGCGGAACAGACGCCAATCGCAGCAGCAGGCCTCGCACCACCTC
CCAGAATTATCCAGCTTTGGTGGGCGTGCCGCACACCACGTTAGCGCCTC
TTAACATACCCACTTCCACGCCACAGACGCCGCTTTCAGTTGATTCCCTG
CTGCCGGGGACACCTAGCACTGTTGCATCGCTGTCACTGGCCACGCCCAC
AACGCCAGCTCCCTTGGCCACTCCCCTTCCAGTTGCCCCAATTGTGACTG
CCGTCGCGCATCCCAAACCACCGGCCATGGAGCGCTCCACGACCAGCGAG
CGCCGTTCGCGCCCAGTGCGTCCTGCCAGCAAAAAGGCGCAGCGTAGAAA
TGGTCGTCCCATGGGTCAGATGGCCACCAAGGATTTGGGCCGCTGGAAGC
CCATTGACGACTTGGCCCTCATAATTGGCATCCAGCAGACCAACGATCTG
CGGATAATCCATCGCGGCGTTAAGTTTTCCTGCAAGTTTACTCTGCAGGA
ACTACAGCAGCGCTGGTATGCTCTGCTGTATGAGCCTGCGGTGTCCAGGA
TTGCAGTGTCCGCCATAAGGAACCTGCACCCCGAACTCGTGGAGTCCGTT
CAGCGCAAAGCTTTGTACAGCGTGCAGGAGGAGGATCTGCTTGGCACCAT
TAAGAGCTCGGAACAACCAAAACTTGAGCAGTTCCAGGAGCTACTGGATA
AGAATGCCTCCGTTTTCTACTGCGCCCGCACTGCCAAATCCTTGCAAAAC
CATTGGCTTCTTCTCAAGCAGTACACCCTGTTGCCGGATCAGTCAGTGAA
GCCTATATATGGCACGGATCAGCAGCCACTCAGCTTCTCGGATGCAGAAG
ATCAAATCTTCGAGCACGACCTGAACGAGCCACGTGACGAAGCTCTCGAG
ATGGAGCGAGCTCTGGCAGATCGTCGCAACAAACGTAATATTCGCCTGCT
GGAGAACGAGCTCTCGCGCTGGGCCGTCCTGGTGGATTCCGTGCTTAGTC
CGACCGCTGCCTCCGAGTTCGACAACCAGACACTGGCCTGCTTGTGTGGC
CGCCATGTGCGGTACCTAATGCGTTCCAAGGAAATAACATTTGGTCGCGA
TGCCAAGGACTGTGTGGTGGACGTGGATCTGGGGCTCGAGGGACCGGCTG
CGAAGATCTCTCGCCGCCAAGGAACCATTAAGCTGCGCAGCAATGGGGAT
TTCTTCATCGCTAACGAGGGAAAGAGGGCCATCTTTATCGACGGCACTCC
TTTGCTATCCGCCAACAAAGCTCGACTCGGTCACAACTGCACAGTGGAAA
TATCCGGTCTGCGCTTCACCTTCCTGGTCAACTACGAGCTGATCAACGCC
ATCCGCCAGGAGAGCGCCAAGACATCGAATCCCCTCAACTAGTTGCGATC
AGAGCAGGCTGGCTGCGAGTGTTTAATATATTCTAGTACTTAGTAAACCC
CAAAAAAACAAACTTCTGAAATAAAAAGCATATGGACATATGTATAAATC
ATAAAAAAAAAAAAAAAAAAAAAAAA

GH01794.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd5.b 2094 Rcd5.b 143..2047 1..1905 9525 100 Plus
Rcd5-RA 2033 Rcd5-RA 82..1986 1..1905 9525 100 Plus
Rcd5.a 1987 Rcd5.a 611..1987 526..1902 6885 100 Plus
Rcd5.a 1987 Rcd5.a 143..611 1..469 2345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4041139..4041983 1058..1902 4225 100 Plus
chr3L 24539361 chr3L 4040351..4041079 329..1057 3645 100 Plus
chr3L 24539361 chr3L 4039960..4040289 1..330 1650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4041753..4042600 1058..1905 4240 100 Plus
3L 28110227 3L 4040965..4041693 329..1057 3645 100 Plus
3L 28110227 3L 4040574..4040903 1..330 1650 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4041753..4042600 1058..1905 4240 100 Plus
3L 28103327 3L 4040965..4041693 329..1057 3645 100 Plus
3L 28103327 3L 4040574..4040903 1..330 1650 100 Plus
Blast to na_te.dros performed 2019-03-16 07:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
frogger 2483 frogger FROGGER 2483bp 1861..1948 327..239 118 60.7 Minus

GH01794.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:44:16 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4039960..4040138 1..179 100 == Plus
chr3L 4040190..4040289 231..330 100 -> Plus
chr3L 4040353..4041079 331..1057 100 -> Plus
chr3L 4041139..4041973 1058..1892 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:05:05 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
CG1135-RA 1..1737 56..1792 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:50:04 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd5-RA 1..1737 56..1792 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:02:33 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd5-RA 1..1737 56..1792 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:18:55 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
CG1135-RA 1..1737 56..1792 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:25 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd5-RA 1..1737 56..1792 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:34:36 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
CG1135-RA 41..1942 1..1902 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:50:03 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd5-RA 41..1942 1..1902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:33 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd5-RA 46..1947 1..1902 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:18:56 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
CG1135-RA 41..1942 1..1902 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:25 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd5-RA 46..1947 1..1902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:44:16 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4040574..4040903 1..330 100 -> Plus
3L 4040967..4041693 331..1057 100 -> Plus
3L 4041753..4042597 1058..1902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:44:16 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4040574..4040903 1..330 100 -> Plus
3L 4040967..4041693 331..1057 100 -> Plus
3L 4041753..4042597 1058..1902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:44:16 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4040574..4040903 1..330 100 -> Plus
3L 4040967..4041693 331..1057 100 -> Plus
3L 4041753..4042597 1058..1902 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:33 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4040574..4040903 1..330 100 -> Plus
arm_3L 4040967..4041693 331..1057 100 -> Plus
arm_3L 4041753..4042597 1058..1902 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:55:47 Download gff for GH01794.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4040574..4040903 1..330 100 -> Plus
3L 4040967..4041693 331..1057 100 -> Plus
3L 4041753..4042597 1058..1902 100   Plus

GH01794.hyp Sequence

Translation from 1 to 1791

> GH01794.hyp
AVRRENKYILAHKQPARAMEASRITAIASSAVSVTAPNPPTVSTIPTAAA
STLIQVGVSPATTTMPTPAATTTTTTIGSTASSAVGISTPIRNPISNLQI
EQQNDQKRRSSSRTIKRKRFDDEIVEYNIAVPTNRSGTDANRSSRPRTTS
QNYPALVGVPHTTLAPLNIPTSTPQTPLSVDSLLPGTPSTVASLSLATPT
TPAPLATPLPVAPIVTAVAHPKPPAMERSTTSERRSRPVRPASKKAQRRN
GRPMGQMATKDLGRWKPIDDLALIIGIQQTNDLRIIHRGVKFSCKFTLQE
LQQRWYALLYEPAVSRIAVSAIRNLHPELVESVQRKALYSVQEEDLLGTI
KSSEQPKLEQFQELLDKNASVFYCARTAKSLQNHWLLLKQYTLLPDQSVK
PIYGTDQQPLSFSDAEDQIFEHDLNEPRDEALEMERALADRRNKRNIRLL
ENELSRWAVLVDSVLSPTAASEFDNQTLACLCGRHVRYLMRSKEITFGRD
AKDCVVDVDLGLEGPAAKISRRQGTIKLRSNGDFFIANEGKRAIFIDGTP
LLSANKARLGHNCTVEISGLRFTFLVNYELINAIRQESAKTSNPLN*

GH01794.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd5-PA 578 CG1135-PA 1..578 19..596 2928 100 Plus

GH01794.pep Sequence

Translation from 55 to 1791

> GH01794.pep
MEASRITAIASSAVSVTAPNPPTVSTIPTAAASTLIQVGVSPATTTMPTP
AATTTTTTIGSTASSAVGISTPIRNPISNLQIEQQNDQKRRSSSRTIKRK
RFDDEIVEYNIAVPTNRSGTDANRSSRPRTTSQNYPALVGVPHTTLAPLN
IPTSTPQTPLSVDSLLPGTPSTVASLSLATPTTPAPLATPLPVAPIVTAV
AHPKPPAMERSTTSERRSRPVRPASKKAQRRNGRPMGQMATKDLGRWKPI
DDLALIIGIQQTNDLRIIHRGVKFSCKFTLQELQQRWYALLYEPAVSRIA
VSAIRNLHPELVESVQRKALYSVQEEDLLGTIKSSEQPKLEQFQELLDKN
ASVFYCARTAKSLQNHWLLLKQYTLLPDQSVKPIYGTDQQPLSFSDAEDQ
IFEHDLNEPRDEALEMERALADRRNKRNIRLLENELSRWAVLVDSVLSPT
AASEFDNQTLACLCGRHVRYLMRSKEITFGRDAKDCVVDVDLGLEGPAAK
ISRRQGTIKLRSNGDFFIANEGKRAIFIDGTPLLSANKARLGHNCTVEIS
GLRFTFLVNYELINAIRQESAKTSNPLN*

GH01794.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10092-PA 583 GF10092-PA 1..583 1..578 2437 82.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15185-PA 581 GG15185-PA 1..581 1..578 2777 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14562-PA 584 GH14562-PA 69..584 74..578 2016 77.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd5-PA 578 CG1135-PA 1..578 1..578 2928 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13885-PA 558 GI13885-PA 46..558 74..578 1984 76.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17030-PA 547 GL17030-PA 42..547 72..578 1977 75 Plus
Dper\GL18699-PA 387 GL18699-PA 52..386 244..577 1110 63.4 Plus
Dper\GL22205-PA 388 GL22205-PA 45..387 230..577 933 52.8 Plus
Dper\GL14975-PA 379 GL14975-PA 22..378 219..577 840 48.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10939-PA 582 GA10939-PA 77..582 72..578 1976 75 Plus
Dpse\GA25761-PA 387 GA25761-PA 52..386 244..577 1110 63.4 Plus
Dpse\GA27414-PA 388 GA27414-PA 45..387 230..577 929 52.6 Plus
Dpse\GA22377-PA 379 GA22377-PA 22..378 219..577 819 48.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14616-PA 578 GM14616-PA 1..578 1..578 3002 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13805-PA 552 GD13805-PA 1..552 1..578 2838 93.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11739-PA 559 GJ11739-PA 51..559 77..578 2036 77 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17772-PA 580 GK17772-PA 16..580 28..578 2037 71.5 Plus
Dwil\GK17773-PA 542 GK17773-PA 1..541 1..577 1579 58.5 Plus
Dwil\GK22928-PA 359 GK22928-PA 4..358 215..577 1420 76 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21404-PA 579 GE21404-PA 1..579 1..578 2742 93.8 Plus