Clone GH01813 Report

Search the DGRC for GH01813

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:18
Well:13
Vector:pOT2
Associated Gene/Transcriptwls-RA
Protein status:GH01813.pep: gold
Preliminary Size:2017
Sequenced Size:2584

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6210 2001-01-01 Release 2 assignment
CG6210 2001-10-10 Blastp of sequenced clone
CG6210 2003-01-01 Sim4 clustering to Release 3
wls 2008-04-29 Release 5.5 accounting
wls 2008-08-15 Release 5.9 accounting
wls 2008-12-18 5.12 accounting

Clone Sequence Records

GH01813.complete Sequence

2584 bp (2584 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060600

> GH01813.complete
TTGATTCTTGATTAGGTTCTGCATTTTTTCTGTTTGCGGCGGCGGCGGCG
CGTTTGAAGTATTGTTTTCAAGTGCAGCAGATTGTTTACTTTACGCCCAC
CCAACTGTGTAAACAAATTCAGCGCAGGGCAGTAAACCAGTGAGCTCCAA
ACCTTCGAGCAACCAAGATGTCGGGCACCATACTGGAGAACCTGAGTGGC
CGCAAGCTGTCCATATTGGTGGCCACTTTGCTGCTCTGCCAGGTGTTGTG
CTTCCTGCTGGGCGGTCTGTATGCCCCCCTGCCCGCCGGCCATGTCACCG
TGCTGGGATCGCTGTGCCGCGAGGATCACGCCCGCCAGAATGACACCAGT
TTCCTGCTGTACTCACGCGGTGCAGGAGCCTGCATCCCAGTGACGCGAGA
GGAGGTGGAGCAGGATTCAACAAAGATGGCCAATGAGTTGGTGCACGTTT
TCCAGATGCCGCTGCCTCGTGACCTGCGCGACCTGGACTACTCCCGTTGG
CAGCAGAATCTGATCGGTGTGCTACAGGTGGAGTTCGGCTATGATTCCTC
GTCGGAGCTAAGGGAACCGCCCAGGGAACTTCAGTTGACAATCGACATGC
GTCTGGCGTACCGAAATAAGGGGGATCCGGACAACGGCTGGAAGTTGTAC
GCCCACGGCGTCGAGCATCGCTACCTGGATTGTGTCACTTCTCATGTGGG
TCCCACAGAAACGCTGTACTCATGCGACATGATACCGCTTTTCGAATTGG
GCGCATTGCACCACAGCTTCTATCTGCTGAACTTGCGTTTCCCGCTGGAC
ACACCGAGCCAAATGAACCTGCAGTTCGGCCATATGCACGATCTCACGCT
GACAGCTATTCATCAGAACGGAGGATTCACACAGATTTGGCTGTTGCTTA
AGACAATGCTGTTTCCATTCGTAGTGGGCATCATGATATGGTTCTGGAGG
CGAGTGCATCTGCTGCAACGATCCCCCGCCCTGCTGGAGTATATGCTTAT
CTATTTGGGAGCCGCTCTGACCTTCCTCAATCTACCGCTGGAGTACTTGT
CGCTGGTCTACGAGATGCCGTACATGCTGCTGCTAAGTGATATTCGCCAA
GGCATCTTTTATGCCATGCTGCTCACTTTCTGGCTGGTCTTCGCCGGTGA
ACACATGCTCATTCAGGATGCTCCGAACAAGTCGACCATTCGCTCGCGTT
ACTGGAAACATCTCTCGGCCGTCGTCGTGGGCTGCATCTCGCTGTTCGTC
TTCGACATCTGCGAAAGGGGCGTGCAGCTACGCAATCCATTCTACTCGAT
CTGGACAACGCCGCTGGGCGCTAAGGTGGCCATGACTTTCATTGTTCTGG
CCGGAGTTTCGGCAGCCATTTATTTCCTCTTTCTGTGCTACATGATATGG
AAGGTGTTTAGGAATATTGGCGACAAGCGCACCTCGCTGCCTTCGATGTC
CCAGGCGCGACGACTCCATTATGAAGTTCCTTTAGACCAGAAAGTTGAAG
ATTGGGCCGGAATCGTATATTTTTACACAAAAGCTTTTTTTTTTCAATTG
CATAAGGCAAATGAAAGTAAAGGTCTTATCTATCGCTTCAAGTTTTTGAT
GCTGGCCACCCTTGTATGTGCAGCTCTGACCGTCGCCGGCTTCATTATGG
GCCAAATGGCCGAGGGCCAGTGGGACTGGAACGACAATGTGGCAATTCAG
CCAACTTCCGCCTTCCTGACCGGCGTCTACGGCATGTGGAACATCTATAT
CTTCGCCCTGCTCATCCTGTACGCGCCCAGTCACAAGCAATGGCCGACAA
TGCACCACAGTGACGAGACCACACAGTCGAATGAGAATATAGTTGCCTCA
GCAGCCAGCGAGGAGATCGAGTTCAGTCACCTGCCATCGGACTCCAATCC
CAGCGAGATCTCCTCACTCACCTCGTTCACACGCAAGGTGGCCTTCGATT
AGGCGGAAGGACTCGAATTATTGTTTTCTAAAGGGTTGTGTGCCAAACTG
AGATCACAATTTGGCCTGCAGCCGCAACGCTTAAAGTGTGTGCTCATTTA
ATTACCATAGTCAGTAGCATTTCTTGCCTAGTTTTGCATTCTGTGCATTC
GACAACGCGATCAGCATTATTACTTATCATTAACATATAGATTGTCTAGT
TTTTCACAGCATGCTCAAAGTGTACGATTTTATCAAATGTATTTTTATGT
ATGCGCCTCGGCAGTATTATCTATTGATGTCCAATTGTGCTAGCTTGTAA
GTTTTAACATATATTATCAAATAACATTTTATACGTGTAATAACGTTCAA
GGGTGGTCCCATTTTTTTTGCTGAACAACATCTTGCCTCGGAAACTATAT
GTTTAACATTGAGATGAATTAAAAATCGAATAGTGTATTAAAATGATATT
ATTCATATAGTTTCAAGTGCCAAATTGTCGACAGATTAAAAAAGAACTCA
TACTTACCACCCTATAATATTTATCCAGAGGACTCTGCCCAGATTTTAAA
ACTAAAAACGTAGAGCAATTTTGTATTCAAGTAGCAATGCATCGAATAAA
AAGCAATATTGAAAAAAAAAAAAAAAAAAAAAAA

GH01813.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
wls-RA 2664 wls-RA 99..2663 1..2565 12825 100 Plus
wls-RB 2568 wls-RB 101..1576 1..1476 7380 100 Plus
wls-RB 2568 wls-RB 1574..2568 1570..2564 4975 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11158986..11160461 1476..1 7320 99.7 Minus
chr3L 24539361 chr3L 11157467..11158459 2561..1571 4870 99.6 Minus
chr3L 24539361 chr3L 11158666..11158765 1574..1475 500 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11168137..11169612 1476..1 7380 100 Minus
3L 28110227 3L 11166616..11167610 2565..1571 4975 100 Minus
3L 28110227 3L 11167817..11167916 1574..1475 500 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11161237..11162712 1476..1 7380 100 Minus
3L 28103327 3L 11159716..11160710 2565..1571 4975 100 Minus
3L 28103327 3L 11160917..11161016 1574..1475 500 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:55:47 has no hits.

GH01813.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:56:36 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11157467..11158457 1573..2561 99 <- Minus
chr3L 11158668..11158763 1477..1572 100 <- Minus
chr3L 11158986..11160461 1..1476 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:05:11 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
wls-RA 1..1785 168..1952 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:50:05 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
wls-RA 1..1785 168..1952 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:16 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
wls-RA 1..1785 168..1952 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:18:56 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
wls-RA 1..1785 168..1952 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:51:28 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
wls-RA 1..1785 168..1952 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:34:38 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
wls-RA 30..2590 1..2561 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:50:05 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
wls-RA 30..2590 1..2561 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:16 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
wls-RA 14..2574 1..2561 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:18:57 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
wls-RA 30..2590 1..2561 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:51:28 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
wls-RA 14..2574 1..2561 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:56:36 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11166620..11167608 1573..2561 100 <- Minus
3L 11167819..11167914 1477..1572 100 <- Minus
3L 11168137..11169612 1..1476 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:56:36 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11166620..11167608 1573..2561 100 <- Minus
3L 11167819..11167914 1477..1572 100 <- Minus
3L 11168137..11169612 1..1476 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:56:36 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11166620..11167608 1573..2561 100 <- Minus
3L 11167819..11167914 1477..1572 100 <- Minus
3L 11168137..11169612 1..1476 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:16 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11159720..11160708 1573..2561 100 <- Minus
arm_3L 11160919..11161014 1477..1572 100 <- Minus
arm_3L 11161237..11162712 1..1476 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:55:48 Download gff for GH01813.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11159720..11160708 1573..2561 100 <- Minus
3L 11160919..11161014 1477..1572 100 <- Minus
3L 11161237..11162712 1..1476 100   Minus

GH01813.pep Sequence

Translation from 167 to 1951

> GH01813.pep
MSGTILENLSGRKLSILVATLLLCQVLCFLLGGLYAPLPAGHVTVLGSLC
REDHARQNDTSFLLYSRGAGACIPVTREEVEQDSTKMANELVHVFQMPLP
RDLRDLDYSRWQQNLIGVLQVEFGYDSSSELREPPRELQLTIDMRLAYRN
KGDPDNGWKLYAHGVEHRYLDCVTSHVGPTETLYSCDMIPLFELGALHHS
FYLLNLRFPLDTPSQMNLQFGHMHDLTLTAIHQNGGFTQIWLLLKTMLFP
FVVGIMIWFWRRVHLLQRSPALLEYMLIYLGAALTFLNLPLEYLSLVYEM
PYMLLLSDIRQGIFYAMLLTFWLVFAGEHMLIQDAPNKSTIRSRYWKHLS
AVVVGCISLFVFDICERGVQLRNPFYSIWTTPLGAKVAMTFIVLAGVSAA
IYFLFLCYMIWKVFRNIGDKRTSLPSMSQARRLHYEVPLDQKVEDWAGIV
YFYTKAFFFQLHKANESKGLIYRFKFLMLATLVCAALTVAGFIMGQMAEG
QWDWNDNVAIQPTSAFLTGVYGMWNIYIFALLILYAPSHKQWPTMHHSDE
TTQSNENIVASAASEEIEFSHLPSDSNPSEISSLTSFTRKVAFD*

GH01813.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24563-PA 562 GF24563-PA 1..562 1..594 2864 90.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13932-PA 591 GG13932-PA 1..591 1..594 3017 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16661-PA 681 GH16661-PA 1..437 1..437 1959 82.6 Plus
Dgri\GH16661-PA 681 GH16661-PA 556..681 469..594 618 91.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
wls-PA 594 CG6210-PA 1..594 1..594 3139 100 Plus
wls-PB 562 CG6210-PB 1..562 1..594 2923 94.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11620-PA 562 GI11620-PA 1..562 1..594 2509 79.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22839-PA 562 GL22839-PA 1..562 1..594 2736 85.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19442-PA 562 GA19442-PA 1..562 1..594 2739 85.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24767-PA 607 GM24767-PA 1..607 1..594 3102 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12816-PA 607 GD12816-PA 1..607 1..594 3111 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11298-PA 562 GJ11298-PA 1..562 1..594 2581 80.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20551-PA 562 GK20551-PA 1..562 1..594 2608 82.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20230-PA 562 GE20230-PA 1..562 1..594 2955 93.8 Plus

GH01813.hyp Sequence

Translation from 167 to 1951

> GH01813.hyp
MSGTILENLSGRKLSILVATLLLCQVLCFLLGGLYAPLPAGHVTVLGSLC
REDHARQNDTSFLLYSRGAGACIPVTREEVEQDSTKMANELVHVFQMPLP
RDLRDLDYSRWQQNLIGVLQVEFGYDSSSELREPPRELQLTIDMRLAYRN
KGDPDNGWKLYAHGVEHRYLDCVTSHVGPTETLYSCDMIPLFELGALHHS
FYLLNLRFPLDTPSQMNLQFGHMHDLTLTAIHQNGGFTQIWLLLKTMLFP
FVVGIMIWFWRRVHLLQRSPALLEYMLIYLGAALTFLNLPLEYLSLVYEM
PYMLLLSDIRQGIFYAMLLTFWLVFAGEHMLIQDAPNKSTIRSRYWKHLS
AVVVGCISLFVFDICERGVQLRNPFYSIWTTPLGAKVAMTFIVLAGVSAA
IYFLFLCYMIWKVFRNIGDKRTSLPSMSQARRLHYEVPLDQKVEDWAGIV
YFYTKAFFFQLHKANESKGLIYRFKFLMLATLVCAALTVAGFIMGQMAEG
QWDWNDNVAIQPTSAFLTGVYGMWNIYIFALLILYAPSHKQWPTMHHSDE
TTQSNENIVASAASEEIEFSHLPSDSNPSEISSLTSFTRKVAFD*

GH01813.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
wls-PA 594 CG6210-PA 1..594 1..594 3139 100 Plus
wls-PB 562 CG6210-PB 1..562 1..594 2923 94.6 Plus