Clone GH01827 Report

Search the DGRC for GH01827

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:18
Well:27
Vector:pOT2
Associated Gene/TranscriptDic61B-RB
Protein status:GH01827.pep: gold
Preliminary Size:2535
Sequenced Size:2574

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7051 2001-01-01 Release 2 assignment
CG7051 2001-11-29 Blastp of sequenced clone
CG7051 2003-01-01 Sim4 clustering to Release 3
CG7051 2008-04-29 Release 5.5 accounting
CG7051 2008-08-15 Release 5.9 accounting
CG7051 2008-12-18 5.12 accounting

Clone Sequence Records

GH01827.complete Sequence

2574 bp (2574 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069035

> GH01827.complete
AAACATATGTATTACCAGAAACCAGTGCCCTCAAAATAATAAAATAACAA
AATACTCATTAAAAATTTGGACGAAATCAAGAGGAGTACATAACAAAATA
CAAGTCATGTCCGCGTCAGTAAGAAATACAGTCACTAGCCAAGAAAATGG
GAGTATCTTTAAAAACACCGTTCCCCACGCGTCAAAAAGCGGTCCAGTAA
CTTAGACAACGAACTCAAAAAGAAGTCCGTGGTGGTTAATCAGACACAAG
CCGAAGAGTCTAAGGCTAAGAAGAAAGATACTACGCACTATTACAGTGTG
GAAACACTTGCCGACCTGCAGTATCGATCTCAGATAAAGGTTTTGGAAAA
GATCTATGGCGAGGAGGTTGATATGACACCTAAGTCGATCCAAGATGACA
CCTATGTGGAGCAGTTCATGAAGTACAACCTAAATGTCATGCACCAAATG
ACTAACTTCACTACAATGGTAGCGAAGAGCACGACCAGATCCCGCACGCG
GTCTAGTGTTCGGGCCGGAATAGGCGGCAATAAGCAGTCCATTGACGACC
TGATGAACGGGATACTTTATGAAACTATTAACTGGGAACCGTACAGCACT
GTTGAGGCTCTCGAAGAGGCGTACGAGCCAAAGCCGTATACCAAGTCCTT
TTTAAAGATCACCTTACGCAAGTCTGACTTCTTCGAAATTCACAGCCAGA
CGCAGACGACGGTGGCCAAGGGATCGCCCGAGGGCGACGATGCGGAGCGA
GACAACCGAAACTACGAGTATCTGACAATAGGGAAAGGCAAAATTCGCCG
GCGCTCAGACAATGACGCTCAGACAGATACTCTGCTCTTCACCACTCGGG
CAGTCAACACCATCCTCATAACCAAGGCCACCGTCAGCTCTTACGTTTCC
AACTTTGAGATGTACGACACGCTGAACAATATCACCAAGGAGTTCGCAAC
AGCCACTATGAGTTCGGTAAAGGACCTGACCTCGGCTCTAGCGCAGACGG
AGGATGCGGATACCTTTGAGGACGACGAGGCCGTTGCCGAAAAAGACAAG
GTCAGCAGCCAGATAGAGCGCCTGTTCCGGAGCCCCGAGTTTCGCAACGC
CATCATGTACATGGGCCGCACGCTCTCGAGCAACACAAACGAGGCGGGGT
TACGACGCTTCCGTAACTTTGACCAGGTGGAACGCTGGAACGCGGAGGCC
GAGTACGTCTACTCGATGAACTTGCTCTTTCGGCTGGTACCGGAGCCCAG
CAAAGACGAGCGCAAGGCCGTAAGCGACATTGATTTCTGCCGCAGCAATG
GTGACATCCTGGCTGTAGCCTACGGACTGTACTCATTTTCCTCACAGCAC
GTACCGACCTCCGGCAGCGTTTTCCTGTGGAGCATTAAAAATCCAGGCGA
GCCGGAGCGCGCATACTACTACGATGTGCCAGTAACGGCAATAAACTTCT
CGCCATTCTTGCCATCCTTGCTCGCCATTGGTCTGTACGACGGCAGCGTG
GAAGTGCGAGATGTGAGCAGTTTGCAGGACACACCCGTTGCGGTCTCGCA
GCGCAGCACTTCGCCAGGCTCCTCGCCGGTGGTTGCCATCCGCTGGATCA
AACAAGTTTCAGACGACGATCATGAAACAGACATCGATCCATTCCTGAGC
CTCTCCCAGGATGGCTCGGTCACCCGCTTCCGGATTATCAAAAGTCCCTT
CCTGCTTGGTTTTACCCAAATGATTCTGGAGCGAGTCGAGGGGCATCCTG
AGGGCATTTTCGTTCACCCATCGTCGCGTATCCCCTGCGAGTCTAACCGC
CACCCGCAAGGCTTAAGCATCACTACACATCCTCTGCACAAGGACATTTA
CTACGTGCTGACAGATGAGGGCTGCATCCACAAGTGCTCAATCAATTATC
AGCATCAGTACTTGGAAGTCCTGCGTTGTCACGACGGGGGTGTCACCGTA
ATGGAGTTCTCGCCTTGGTCTCCCAAACTCTTCCTCACCTGCGGCAACGA
TTGGTTCGTACGCATTTGGGTCGATGGCATCACGCGACCTCTTCTCGAAC
TGCTAGACGAGATGACCCCAGTGCATTGGGCCAAGTGGAGCCCCACCCAC
TCTACGATTATTGTGACGGTGAACCGGGAAACCGCTAACGTCTGGGACTT
TCGCCGAAATTTGCTAAGACCCATGTCCAAGCACAAGATGGACTCTTCTT
TTAATACTGTGGCCAGGTTTTCCCACTGTGGTCGCACATTGGTTATTGGC
AACGAGCGCGGGAACACGCTCTTCAACGCCCTGAACGACATGCCCTTTTC
GCCACACTTCCAATACGACGAGTTAGAGAAAGCCATTTTCAAGGCAATTG
GCAACGACCACGAGCTTCTTATGGAGCTTAAAAGCATTGGTTTCTTTGGG
TACCCAAACAAAAAAGCAGTTTTTTAGATAGGAAAAATGGTATTCTCAAT
AAAACAAAATAATTCGTCGGCCTGAAAGCGAATCTGGATGGCACTGATGA
AATGTTCACGCATCAGCTATCTAAGAGACACAACGGCGATCGATCGAGTG
TCAAACAAAAAAAAAAAAAAAAAA

GH01827.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7051-RB 2642 CG7051-RB 87..2642 1..2556 12780 100 Plus
CG7051-RA 2754 CG7051-RA 250..2620 190..2560 11855 100 Plus
CG7051-RA 2754 CG7051-RA 87..249 1..163 815 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 150309..151753 2005..561 7225 100 Minus
chr3L 24539361 chr3L 149641..149982 2556..2215 1695 99.7 Minus
chr3L 24539361 chr3L 151810..152033 561..338 1120 100 Minus
chr3L 24539361 chr3L 150044..150259 2218..2003 1080 100 Minus
chr3L 24539361 chr3L 152083..152260 341..164 890 100 Minus
chr3L 24539361 chr3L 152303..152465 163..1 815 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 150347..151791 2005..561 7225 100 Minus
3L 28110227 3L 149675..150020 2560..2215 1730 100 Minus
3L 28110227 3L 151848..152071 561..338 1120 100 Minus
3L 28110227 3L 150082..150297 2218..2003 1080 100 Minus
3L 28110227 3L 152121..152298 341..164 890 100 Minus
3L 28110227 3L 152341..152503 163..1 815 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 150347..151791 2005..561 7225 100 Minus
3L 28103327 3L 149675..150020 2560..2215 1730 100 Minus
3L 28103327 3L 151848..152071 561..338 1120 100 Minus
3L 28103327 3L 150082..150297 2218..2003 1080 100 Minus
3L 28103327 3L 152121..152298 341..164 890 100 Minus
3L 28103327 3L 152341..152503 163..1 815 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:21:40 has no hits.

GH01827.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:22:42 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 149641..149980 2217..2556 99 <- Minus
chr3L 150046..150258 2004..2216 100 <- Minus
chr3L 150311..151752 562..2003 100 <- Minus
chr3L 151810..152031 340..561 100 <- Minus
chr3L 152085..152260 164..339 100 <- Minus
chr3L 152303..152465 1..163 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:05:14 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
CG7051-RA 58..2295 190..2427 100   Plus
CG7051-RA 1..57 107..163 100 == Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:25 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
CG7051-RA 1..57 107..163 100 == Plus
CG7051-RA 58..2295 190..2427 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:35:46 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
Dic61B-RA 1..57 107..163 100 == Plus
Dic61B-RA 58..2295 190..2427 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:45 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
CG7051-RA 1..57 107..163 100 == Plus
CG7051-RA 58..2295 190..2427 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:01:30 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
Dic61B-RA 1..57 107..163 100 == Plus
Dic61B-RA 58..2295 190..2427 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:57:04 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
CG7051-RB 87..2642 1..2556 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:25 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
CG7051-RB 87..2642 1..2556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:46 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
Dic61B-RB 87..2642 1..2556 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:45 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
CG7051-RB 87..2642 1..2556 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:01:30 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
Dic61B-RB 87..2642 1..2556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:42 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
3L 151848..152069 340..561 100 <- Minus
3L 152123..152298 164..339 100 <- Minus
3L 152341..152503 1..163 100   Minus
3L 149679..150018 2217..2556 100 <- Minus
3L 150084..150296 2004..2216 100 <- Minus
3L 150349..151790 562..2003 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:42 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
3L 151848..152069 340..561 100 <- Minus
3L 152123..152298 164..339 100 <- Minus
3L 152341..152503 1..163 100   Minus
3L 149679..150018 2217..2556 100 <- Minus
3L 150084..150296 2004..2216 100 <- Minus
3L 150349..151790 562..2003 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:42 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
3L 151848..152069 340..561 100 <- Minus
3L 152123..152298 164..339 100 <- Minus
3L 152341..152503 1..163 100   Minus
3L 149679..150018 2217..2556 100 <- Minus
3L 150084..150296 2004..2216 100 <- Minus
3L 150349..151790 562..2003 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:46 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 149679..150018 2217..2556 100 <- Minus
arm_3L 150084..150296 2004..2216 100 <- Minus
arm_3L 150349..151790 562..2003 100 <- Minus
arm_3L 151848..152069 340..561 100 <- Minus
arm_3L 152123..152298 164..339 100 <- Minus
arm_3L 152341..152503 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:25:20 Download gff for GH01827.complete
Subject Subject Range Query Range Percent Splice Strand
3L 149679..150018 2217..2556 100 <- Minus
3L 150084..150296 2004..2216 100 <- Minus
3L 150349..151790 562..2003 100 <- Minus
3L 151848..152069 340..561 100 <- Minus
3L 152123..152298 164..339 100 <- Minus
3L 152341..152503 1..163 100   Minus

GH01827.pep Sequence

Translation from 372 to 2426

> GH01827.pep
MTPKSIQDDTYVEQFMKYNLNVMHQMTNFTTMVAKSTTRSRTRSSVRAGI
GGNKQSIDDLMNGILYETINWEPYSTVEALEEAYEPKPYTKSFLKITLRK
SDFFEIHSQTQTTVAKGSPEGDDAERDNRNYEYLTIGKGKIRRRSDNDAQ
TDTLLFTTRAVNTILITKATVSSYVSNFEMYDTLNNITKEFATATMSSVK
DLTSALAQTEDADTFEDDEAVAEKDKVSSQIERLFRSPEFRNAIMYMGRT
LSSNTNEAGLRRFRNFDQVERWNAEAEYVYSMNLLFRLVPEPSKDERKAV
SDIDFCRSNGDILAVAYGLYSFSSQHVPTSGSVFLWSIKNPGEPERAYYY
DVPVTAINFSPFLPSLLAIGLYDGSVEVRDVSSLQDTPVAVSQRSTSPGS
SPVVAIRWIKQVSDDDHETDIDPFLSLSQDGSVTRFRIIKSPFLLGFTQM
ILERVEGHPEGIFVHPSSRIPCESNRHPQGLSITTHPLHKDIYYVLTDEG
CIHKCSINYQHQYLEVLRCHDGGVTVMEFSPWSPKLFLTCGNDWFVRIWV
DGITRPLLELLDEMTPVHWAKWSPTHSTIIVTVNRETANVWDFRRNLLRP
MSKHKMDSSFNTVARFSHCGRTLVIGNERGNTLFNALNDMPFSPHFQYDE
LEKAIFKAIGNDHELLMELKSIGFFGYPNKKAVF*

GH01827.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24898-PA 771 GF24898-PA 89..771 1..684 3016 81.2 Plus
Dana\GF24973-PA 682 GF24973-PA 42..679 37..683 1374 43.3 Plus
Dana\GF12212-PA 737 GF12212-PA 354..680 294..632 306 28.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14687-PA 763 GG14687-PA 80..763 1..684 3644 97.2 Plus
Dere\GG14573-PA 687 GG14573-PA 42..682 37..681 1354 43.5 Plus
Dere\GG22073-PA 739 GG22073-PA 355..681 294..632 317 28.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15995-PA 760 GH15995-PA 74..756 1..681 2384 62.5 Plus
Dgri\GH15513-PA 686 GH15513-PA 48..678 41..679 1307 42 Plus
Dgri\GH23218-PA 442 GH23218-PA 74..419 1..342 933 51.9 Plus
Dgri\GH12958-PA 756 GH12958-PA 373..699 294..632 319 27.9 Plus
Dgri\GH20520-PA 756 GH20520-PA 373..699 294..632 319 27.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dic61B-PB 684 CG7051-PB 1..684 1..684 3593 100 Plus
Dic61B-PA 764 CG7051-PA 81..764 1..684 3593 100 Plus
CG13930-PA 685 CG13930-PA 42..677 37..678 1301 43.2 Plus
CG9313-PC 739 CG9313-PC 355..681 294..632 310 28.7 Plus
CG9313-PA 739 CG9313-PA 355..681 294..632 310 28.7 Plus
CG9313-PB 740 CG9313-PB 356..682 294..632 310 28.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16648-PA 752 GI16648-PA 69..750 2..683 2452 63.9 Plus
Dmoj\GI16791-PA 680 GI16791-PA 42..672 37..679 1290 41.5 Plus
Dmoj\GI21066-PA 747 GI21066-PA 364..690 294..632 316 26.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16089-PA 758 GL16089-PA 91..757 1..683 2533 70.1 Plus
Dper\GL12410-PA 691 GL12410-PA 107..680 93..678 1325 44 Plus
Dper\GL10137-PA 562 GL10137-PA 358..558 294..509 185 26.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20060-PA 770 GA20060-PA 90..769 1..683 2704 73.3 Plus
Dpse\GA12635-PA 691 GA12635-PA 107..680 93..678 1327 44 Plus
Dpse\GA25088-PA 791 GA25088-PA 408..734 294..632 318 27.6 Plus
Dpse\GA25088-PB 742 GA25088-PB 359..685 294..632 317 27.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14302-PA 773 GM14302-PA 90..773 1..684 3694 98.8 Plus
Dsec\GM14183-PA 685 GM14183-PA 42..678 37..679 1336 42.9 Plus
Dsec\GM15791-PA 698 GM15791-PA 314..640 294..632 320 28.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13539-PA 773 GD13539-PA 90..773 1..684 3694 98.8 Plus
Dsim\GD13451-PA 685 GD13451-PA 42..678 37..679 1336 43.2 Plus
Dsim\GD11552-PA 739 GD11552-PA 355..681 294..632 324 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12900-PA 760 GJ12900-PA 72..758 1..683 2556 66.3 Plus
Dvir\GJ12533-PA 696 GJ12533-PA 89..687 67..678 1234 42 Plus
Dvir\GJ21989-PA 749 GJ21989-PA 366..692 294..632 319 27 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12695-PA 754 GK12695-PA 69..749 1..681 2605 68.7 Plus
Dwil\GK17066-PA 689 GK17066-PA 113..679 88..677 1301 43.8 Plus
Dwil\GK17990-PA 741 GK17990-PA 358..684 294..632 324 28.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21048-PA 763 GE21048-PA 80..763 1..684 3625 96.1 Plus
Dyak\GE20931-PA 685 GE20931-PA 42..680 37..681 1353 43.4 Plus
Dyak\GE12154-PA 739 GE12154-PA 355..681 294..632 315 27.7 Plus

GH01827.hyp Sequence

Translation from 372 to 2426

> GH01827.hyp
MTPKSIQDDTYVEQFMKYNLNVMHQMTNFTTMVAKSTTRSRTRSSVRAGI
GGNKQSIDDLMNGILYETINWEPYSTVEALEEAYEPKPYTKSFLKITLRK
SDFFEIHSQTQTTVAKGSPEGDDAERDNRNYEYLTIGKGKIRRRSDNDAQ
TDTLLFTTRAVNTILITKATVSSYVSNFEMYDTLNNITKEFATATMSSVK
DLTSALAQTEDADTFEDDEAVAEKDKVSSQIERLFRSPEFRNAIMYMGRT
LSSNTNEAGLRRFRNFDQVERWNAEAEYVYSMNLLFRLVPEPSKDERKAV
SDIDFCRSNGDILAVAYGLYSFSSQHVPTSGSVFLWSIKNPGEPERAYYY
DVPVTAINFSPFLPSLLAIGLYDGSVEVRDVSSLQDTPVAVSQRSTSPGS
SPVVAIRWIKQVSDDDHETDIDPFLSLSQDGSVTRFRIIKSPFLLGFTQM
ILERVEGHPEGIFVHPSSRIPCESNRHPQGLSITTHPLHKDIYYVLTDEG
CIHKCSINYQHQYLEVLRCHDGGVTVMEFSPWSPKLFLTCGNDWFVRIWV
DGITRPLLELLDEMTPVHWAKWSPTHSTIIVTVNRETANVWDFRRNLLRP
MSKHKMDSSFNTVARFSHCGRTLVIGNERGNTLFNALNDMPFSPHFQYDE
LEKAIFKAIGNDHELLMELKSIGFFGYPNKKAVF*

GH01827.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dic61B-PB 684 CG7051-PB 1..684 1..684 3593 100 Plus
Dic61B-PA 764 CG7051-PA 81..764 1..684 3593 100 Plus
CG13930-PA 685 CG13930-PA 42..677 37..678 1301 43.2 Plus
CG9313-PC 739 CG9313-PC 355..681 294..632 310 28.7 Plus
CG9313-PA 739 CG9313-PA 355..681 294..632 310 28.7 Plus