Clone GH01837 Report

Search the DGRC for GH01837

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:18
Well:37
Vector:pOT2
Associated Gene/TranscriptCG3301-RA
Protein status:GH01837.pep: gold
Preliminary Size:1226
Sequenced Size:1056

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3301 2001-01-01 Release 2 assignment
CG3301 2001-11-09 Blastp of sequenced clone
CG3301 2003-01-01 Sim4 clustering to Release 3
CG3301 2008-04-29 Release 5.5 accounting
CG3301 2008-08-15 Release 5.9 accounting
CG3301 2008-12-18 5.12 accounting

Clone Sequence Records

GH01837.complete Sequence

1056 bp (1056 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069036

> GH01837.complete
CCACATCAAACAGACTTGCCATGAACCGCTGGTTGAATCGCGTTGCCGTA
GTCACTGGTGCCAGCGCCGGAATCGGAGCAGCCTGCTGCCGCGATCTGGT
GGCCAAGGGAATGGTAGTGGTGGGCCTGGCCAGGAGAGAGAAGGTCCTCC
AGGACATCAAATCCTCCCTGCCCGCCGATCAGGCTGCTCGCTTCCACACC
CGCCCCTGTGATGTCAGCAATGAACAGCAGGTCATCGATACCTTCGCCTG
GATCGATCGCACCCTGGGTGGTGCCGACGTGCTTGTCAATAACGCCGGGA
TCATACGTCAAATGAACATCACGGACCCGGAAAATTCCGCTGATGTGCGT
GCCATTCTGGACGTGAATGTGTTGGGAGTGACCTGGTGCACCCGCCAGTG
GTTCCTATCGCTGCAGCGCCGCAAGGTAAACGACGGTCATGTGGTAGTCA
TCAATAGTGTGGTAGGCCACTCCGTTCCGGCCGTGGAGGGCTTCAGCCTG
AACATGTACGCGCCCTCCAAACACGCGATCACCGCCTTGACCGAAATCCT
GCGTCAGGAGTTCATCAAGAAGGGCACTCAAACAAAGATCACGAGCATCA
GTCCTGGTGTAGTGGCCACTGAAATTTTCGAAGCCGGATCCTGGGAGCAA
CCCACAGGCATGCCCATGCTGCGATCGGAGGATATAGCCGATGCGGTGAC
CTACTGCATCCAGACGCCCCCAACTGTCCAGATAAAGGAGCTCATAATCA
AGCCGGTTGGTGAGGGCTTTTGAAGTGACCACTTCCAAGTGACCAAAGAA
AAAATACACCCAAGGTCGCTCTTTTATCTCAACATGGAAACCGGGCTCAA
CTGGTTTTTGCTTACCCCAACGTTCAAGACGCCTTTCTATTAAACCCGTT
TGTTCGTCGGGAACATTTTTAATGATGAATAATCCGGTATAAATCTTTAT
CTACCCATTTTTAATAAGAATATTTGATATCAAAATTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

GH01837.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-RA 1227 CG3301-RA 190..1178 1..989 4945 100 Plus
CG3301-RB 1140 CG3301-RB 58..854 1..797 3985 100 Plus
CG9360-RA 1049 CG9360-RA 136..224 36..124 190 80.8 Plus
CG9360-RA 1049 CG9360-RA 769..857 666..754 175 79.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17099467..17100059 593..1 2860 98.8 Minus
chr3R 27901430 chr3R 17099209..17099409 793..593 1005 100 Minus
chr3R 27901430 chr3R 17098932..17099123 988..797 960 100 Minus
chrX 22417052 chrX 11655403..11655662 295..36 295 74.2 Minus
chr3R 27901430 chr3R 1674989..1675080 663..754 190 80.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:26:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21275639..21276231 593..1 2965 100 Minus
3R 32079331 3R 21275378..21275581 796..593 1020 100 Minus
3R 32079331 3R 21275105..21275297 989..797 965 100 Minus
X 23542271 X 11764207..11764466 295..36 265 73.5 Minus
3R 32079331 3R 5849343..5849434 663..754 190 80.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21016470..21017062 593..1 2965 100 Minus
3R 31820162 3R 21016209..21016412 796..593 1020 100 Minus
3R 31820162 3R 21015936..21016128 989..797 965 100 Minus
3R 31820162 3R 5590174..5590265 663..754 190 80.4 Plus
X 23527363 X 11772476..11772564 124..36 190 80.8 Minus
X 23527363 X 11771761..11771849 754..666 175 79.7 Minus
Blast to na_te.dros performed on 2019-03-16 20:15:57 has no hits.

GH01837.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:16:44 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17098932..17099123 797..988 100 <- Minus
chr3R 17099204..17099408 594..796 99 <- Minus
chr3R 17099467..17100059 1..593 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:05:19 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RB 1..753 21..773 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:01 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RB 1..753 21..773 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:52:59 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 1..753 21..773 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:01:35 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RB 1..753 21..773 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:15 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 1..753 21..773 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:13:21 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 21..1008 1..988 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:01 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 21..1008 1..988 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:59 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 19..1006 1..988 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:01:36 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 21..1008 1..988 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:15 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 19..1006 1..988 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:44 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21275106..21275297 797..988 100 <- Minus
3R 21275378..21275580 594..796 100 <- Minus
3R 21275639..21276231 1..593 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:44 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21275106..21275297 797..988 100 <- Minus
3R 21275378..21275580 594..796 100 <- Minus
3R 21275639..21276231 1..593 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:44 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21275106..21275297 797..988 100 <- Minus
3R 21275378..21275580 594..796 100 <- Minus
3R 21275639..21276231 1..593 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:59 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17100828..17101019 797..988 100 <- Minus
arm_3R 17101100..17101302 594..796 100 <- Minus
arm_3R 17101361..17101953 1..593 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:38:31 Download gff for GH01837.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21016470..21017062 1..593 100   Minus
3R 21015937..21016128 797..988 100 <- Minus
3R 21016209..21016411 594..796 100 <- Minus

GH01837.hyp Sequence

Translation from 2 to 772

> GH01837.hyp
TSNRLAMNRWLNRVAVVTGASAGIGAACCRDLVAKGMVVVGLARREKVLQ
DIKSSLPADQAARFHTRPCDVSNEQQVIDTFAWIDRTLGGADVLVNNAGI
IRQMNITDPENSADVRAILDVNVLGVTWCTRQWFLSLQRRKVNDGHVVVI
NSVVGHSVPAVEGFSLNMYAPSKHAITALTEILRQEFIKKGTQTKITSIS
PGVVATEIFEAGSWEQPTGMPMLRSEDIADAVTYCIQTPPTVQIKELIIK
PVGEGF*

GH01837.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-PC 250 CG3301-PC 1..250 7..256 1285 100 Plus
CG3301-PB 250 CG3301-PB 1..250 7..256 1285 100 Plus
CG3301-PA 250 CG3301-PA 1..250 7..256 1285 100 Plus
CG9360-PA 251 CG9360-PA 1..249 7..254 888 69.5 Plus
CG9150-PB 251 CG9150-PB 1..251 7..256 595 48.4 Plus

GH01837.pep Sequence

Translation from 20 to 772

> GH01837.pep
MNRWLNRVAVVTGASAGIGAACCRDLVAKGMVVVGLARREKVLQDIKSSL
PADQAARFHTRPCDVSNEQQVIDTFAWIDRTLGGADVLVNNAGIIRQMNI
TDPENSADVRAILDVNVLGVTWCTRQWFLSLQRRKVNDGHVVVINSVVGH
SVPAVEGFSLNMYAPSKHAITALTEILRQEFIKKGTQTKITSISPGVVAT
EIFEAGSWEQPTGMPMLRSEDIADAVTYCIQTPPTVQIKELIIKPVGEGF
*

GH01837.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17260-PA 250 GF17260-PA 1..250 1..250 1093 80 Plus
Dana\GF16365-PA 250 GF16365-PA 1..250 1..250 954 70 Plus
Dana\GF16364-PA 250 GF16364-PA 1..250 1..250 929 69.2 Plus
Dana\GF20253-PA 252 GF20253-PA 1..252 1..250 923 70.2 Plus
Dana\GF15405-PA 251 GF15405-PA 1..251 1..250 637 51.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14727-PA 250 GG14727-PA 1..250 1..250 1293 98 Plus
Dere\GG18834-PA 251 GG18834-PA 1..251 1..250 866 66.9 Plus
Dere\GG13756-PA 252 GG13756-PA 1..252 1..250 603 46.7 Plus
Dere\GG10137-PA 251 GG10137-PA 1..251 1..250 600 47.6 Plus
Dere\GG18873-PA 250 GG18873-PA 1..248 1..248 591 49.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18905-PA 250 GH18905-PA 1..250 1..250 989 72.4 Plus
Dgri\GH18894-PA 249 GH18894-PA 1..247 1..248 962 72.2 Plus
Dgri\GH24588-PA 250 GH24588-PA 1..250 1..250 948 69.2 Plus
Dgri\GH12229-PA 250 GH12229-PA 1..250 1..250 614 48.6 Plus
Dgri\GH10934-PA 251 GH10934-PA 1..251 1..250 607 48 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-PC 250 CG3301-PC 1..250 1..250 1285 100 Plus
CG3301-PB 250 CG3301-PB 1..250 1..250 1285 100 Plus
CG3301-PA 250 CG3301-PA 1..250 1..250 1285 100 Plus
CG9360-PA 251 CG9360-PA 1..249 1..248 888 69.5 Plus
CG9150-PB 251 CG9150-PB 1..251 1..250 595 48.4 Plus
antdh-PA 250 CG1386-PA 1..248 1..248 579 51 Plus
CG8757-PB 252 CG8757-PB 1..252 1..250 579 46.3 Plus
CG10962-PB 249 CG10962-PB 1..249 1..250 558 47.6 Plus
CG40486-PC 247 CG40486-PC 1..247 1..250 537 47 Plus
CG40486-PB 247 CG40486-PB 1..247 1..250 537 47 Plus
CG40485-PC 247 CG40485-PC 1..247 1..250 518 45.7 Plus
CG40485-PB 247 CG40485-PB 1..247 1..250 518 45.7 Plus
rdhB-PB 248 CG7077-PB 7..242 4..244 414 37.8 Plus
rdhB-PA 248 CG7077-PA 7..242 4..244 414 37.8 Plus
CG40485-PA 231 CG40485-PA 1..192 1..191 373 44.1 Plus
CG7601-PA 326 CG7601-PA 49..243 2..202 172 26.8 Plus
CG12171-PA 257 CG12171-PA 1..216 1..226 158 26.4 Plus
Pdh-PC 261 CG4899-PC 8..190 9..203 154 28.1 Plus
Pdh-PA 278 CG4899-PA 25..207 9..203 154 28.1 Plus
CG13833-PA 321 CG13833-PA 54..240 8..200 148 26.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10833-PA 250 GI10833-PA 1..250 1..250 950 71.6 Plus
Dmoj\GI15259-PA 251 GI15259-PA 1..251 1..250 894 66.9 Plus
Dmoj\GI13477-PA 251 GI13477-PA 1..251 1..250 606 48.8 Plus
Dmoj\GI14955-PA 247 GI14955-PA 1..247 1..250 603 49.4 Plus
Dmoj\GI16085-PA 260 GI16085-PA 1..260 1..250 589 44.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27161-PA 250 GL27161-PA 1..250 1..250 1022 75.6 Plus
Dper\GL24037-PA 250 GL24037-PA 1..250 1..250 1015 73.6 Plus
Dper\GL24036-PA 249 GL24036-PA 1..249 1..250 953 72.4 Plus
Dper\GL15228-PA 245 GL15228-PA 1..243 1..248 912 70.7 Plus
Dper\GL24038-PA 240 GL24038-PA 1..240 1..247 865 67.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17238-PA 250 GA17238-PA 1..250 1..250 1022 75.6 Plus
Dpse\GA26486-PA 250 GA26486-PA 1..250 1..250 993 72.8 Plus
Dpse\GA10693-PA 250 GA10693-PA 1..250 1..250 988 72.8 Plus
Dpse\GA21729-PA 250 GA21729-PA 1..248 1..248 938 71.5 Plus
Dpse\GA21577-PA 251 GA21577-PA 1..251 1..250 600 47.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15086-PA 250 GM15086-PA 1..250 1..250 1302 98.8 Plus
Dsec\GM13047-PA 251 GM13047-PA 1..249 1..248 923 69.5 Plus
Dsec\GM10850-PA 250 GM10850-PA 1..250 1..250 904 71.2 Plus
Dsec\GM24579-PA 252 GM24579-PA 1..252 1..250 612 47.1 Plus
Dsec\GM17962-PA 251 GM17962-PA 1..251 1..250 612 48 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19991-PA 250 GD19991-PA 1..250 1..250 1311 99.2 Plus
Dsim\GD19832-PA 250 GD19832-PA 1..250 1..250 944 71.2 Plus
Dsim\GD15972-PA 251 GD15972-PA 1..249 1..248 922 69.1 Plus
Dsim\GD22600-PA 251 GD22600-PA 1..251 1..250 615 48.4 Plus
Dsim\GD15999-PA 250 GD15999-PA 1..248 1..248 600 50.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14832-PA 250 GJ14832-PA 1..250 1..250 990 72 Plus
Dvir\GJ14440-PA 250 GJ14440-PA 1..250 1..250 982 72.8 Plus
Dvir\GJ23779-PA 249 GJ23779-PA 1..249 1..250 978 71.6 Plus
Dvir\GJ14831-PA 250 GJ14831-PA 1..250 1..250 972 70.4 Plus
Dvir\GJ12118-PA 251 GJ12118-PA 1..251 1..250 604 48.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14224-PA 250 GK14224-PA 1..250 1..250 1004 75.6 Plus
Dwil\GK14222-PA 307 GK14222-PA 1..248 1..248 1003 74.2 Plus
Dwil\GK14223-PA 250 GK14223-PA 1..250 1..250 993 72.8 Plus
Dwil\GK12769-PA 250 GK12769-PA 1..250 1..250 989 72.8 Plus
Dwil\GK14225-PA 250 GK14225-PA 1..250 1..250 970 70.8 Plus
Dwil\GK14222-PA 307 GK14222-PA 249..307 192..250 194 64.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25000-PA 250 GE25000-PA 1..250 1..250 1297 97.6 Plus
Dyak\GE17599-PA 251 GE17599-PA 1..249 1..248 920 68.3 Plus
Dyak\GE17313-PA 250 GE17313-PA 1..248 1..248 610 51.4 Plus
Dyak\GE20052-PA 266 GE20052-PA 15..266 1..250 609 46.7 Plus
Dyak\GE18948-PA 251 GE18948-PA 1..251 1..250 601 47.2 Plus