Clone GH01960 Report

Search the DGRC for GH01960

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:19
Well:60
Vector:pOT2
Associated Gene/Transcriptl(2)efl-RA
Protein status:GH01960.pep: gold
Preliminary Size:719
Sequenced Size:735

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4533 2001-01-01 Release 2 assignment
CG4533 2001-07-04 Blastp of sequenced clone
CG4533 2003-01-01 Sim4 clustering to Release 3
l(2)efl 2008-04-29 Release 5.5 accounting
l(2)efl 2008-08-15 Release 5.9 accounting
l(2)efl 2008-12-18 5.12 accounting

Clone Sequence Records

GH01960.complete Sequence

735 bp (735 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047516

> GH01960.complete
CGAATCGAAGCAGACGCGTTTATCCAAGTGAATTGAATCTAAAAAGATGT
CCGTAGTGCCACTGATGTTCCGTGACTGGTGGGATGAGCTCGACTTTCCA
ATGCGCACCTCGCGCCTCTTGGACCAGCACTTCGGTCAGGGACTGAAGAG
GGATGACCTCATGTCCTCCGTGTGGAACTCCCGCCCCACAGTGCTGCGAT
CGGGATACCTGCGCCCCTGGCACACGAACAGCCTGCAGAAGCAGGAGTCC
GGTTCCACCCTCAACATCGACAGCGAGAAGTTCGAGGTCATTCTGGATGT
GCAGCAGTTCTCGCCATCCGAGATCACCGTCAAGGTGGCCGACAAGTTCG
TCATCGTGGAGGGAAAGCATGAGGAGAAGCAGGACGAGCACGGATATGTC
TCCCGCCAGTTCTCCAGACGCTACCAGCTGCCAAGTGATGTCAACCCCGA
CACGGTCACATCGTCCCTCTCCTCCGATGGCCTGCTGACCATCAAGGCGC
CAATGAAGGCGCTGCCTCCTCCGCAGACTGAACGCCTTGTGCAGATCACA
CAGACTGGTCCCTCCTCCAAGGAGGACAACGCCAAGAAGGTGGAGACCTC
CACCGCCTAGGACTCAATCCTTTTGTACCGCCTTCAGTGTTAGTTAGTTT
ATGTCTACGTGTGCCTTATATATTGGACTCTACATATTTTATATCAATTA
AAACGAATCTTTAGATAAAAAAAAAAAAAAAAAAA

GH01960.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-RA 867 l(2)efl-RA 140..858 1..719 3595 100 Plus
l(2)efl-RB 844 l(2)efl-RB 55..492 1..438 2190 100 Plus
l(2)efl-RB 844 l(2)efl-RB 551..835 435..719 1425 100 Plus
CG5431-RA 1143 CG5431-RA 1061..1143 719..637 415 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19571172..19571565 438..45 1955 99.7 Minus
chr2R 21145070 chr2R 19570832..19571113 716..435 1365 98.9 Minus
chr2R 21145070 chr2R 19571657..19571702 46..1 215 97.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23684991..23685384 438..45 1970 100 Minus
2R 25286936 2R 23684648..23684932 719..435 1425 100 Minus
2R 25286936 2R 23685476..23685521 46..1 230 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23686190..23686583 438..45 1970 100 Minus
2R 25260384 2R 23685847..23686131 719..435 1425 100 Minus
2R 25260384 2R 23686675..23686720 46..1 230 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:35:53 has no hits.

GH01960.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:36:57 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19570832..19571113 435..716 98 <- Minus
chr2R 19571176..19571563 47..434 99 <- Minus
chr2R 19571657..19571702 1..46 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:06:04 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 1..564 47..610 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:51 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 1..564 47..610 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:02:53 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 1..564 47..610 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:08 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 1..564 47..610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:26:57 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 20..735 1..716 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:50 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 20..735 1..716 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:02:53 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 23..738 1..716 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:26 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 20..735 1..716 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:08 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 23..738 1..716 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:36:57 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23684651..23684932 435..716 100 <- Minus
2R 23684995..23685382 47..434 100 <- Minus
2R 23685476..23685521 1..46 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:36:57 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23684651..23684932 435..716 100 <- Minus
2R 23684995..23685382 47..434 100 <- Minus
2R 23685476..23685521 1..46 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:36:57 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23684651..23684932 435..716 100 <- Minus
2R 23684995..23685382 47..434 100 <- Minus
2R 23685476..23685521 1..46 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:02:53 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19572174..19572455 435..716 100 <- Minus
arm_2R 19572518..19572905 47..434 100 <- Minus
arm_2R 19572999..19573044 1..46 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:45 Download gff for GH01960.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23685868..23686149 435..716 100 <- Minus
2R 23686212..23686599 47..434 100 <- Minus
2R 23686693..23686738 1..46 100   Minus

GH01960.pep Sequence

Translation from 46 to 609

> GH01960.pep
MSVVPLMFRDWWDELDFPMRTSRLLDQHFGQGLKRDDLMSSVWNSRPTVL
RSGYLRPWHTNSLQKQESGSTLNIDSEKFEVILDVQQFSPSEITVKVADK
FVIVEGKHEEKQDEHGYVSRQFSRRYQLPSDVNPDTVTSSLSSDGLLTIK
APMKALPPPQTERLVQITQTGPSSKEDNAKKVETSTA*

GH01960.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11829-PA 187 GF11829-PA 1..187 1..187 945 95.7 Plus
Dana\GF10691-PA 190 GF10691-PA 66..166 74..173 275 49.5 Plus
Dana\GF23739-PA 205 GF23739-PA 81..181 74..173 269 48.5 Plus
Dana\GF10692-PA 219 GF10692-PA 1..190 1..173 262 39.8 Plus
Dana\GF23740-PA 195 GF23740-PA 81..191 79..187 239 44.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20009-PA 187 GG20009-PA 1..187 1..187 969 98.4 Plus
Dere\GG15371-PA 212 GG15371-PA 1..186 1..173 277 41.1 Plus
Dere\GG15370-PA 187 GG15370-PA 67..167 74..173 271 51.5 Plus
Dere\GG14047-PA 208 GG14047-PA 80..184 70..173 265 45.7 Plus
Dere\GG14048-PA 199 GG14048-PA 80..188 78..186 250 44 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21555-PA 189 GH21555-PA 1..188 1..186 903 91.5 Plus
Dgri\GH17009-PA 218 GH17009-PA 1..200 1..186 318 38.5 Plus
Dgri\GH17008-PA 180 GH17008-PA 49..172 61..181 300 46 Plus
Dgri\GH14700-PA 204 GH14700-PA 16..177 21..173 291 38.9 Plus
Dgri\GH23707-PA 185 GH23707-PA 61..177 68..181 279 45.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-PC 187 CG4533-PC 1..187 1..187 970 100 Plus
l(2)efl-PA 187 CG4533-PA 1..187 1..187 970 100 Plus
Hsp27-PB 213 CG4466-PB 1..185 1..173 312 41.4 Plus
Hsp27-PA 213 CG4466-PA 1..185 1..173 312 41.4 Plus
Hsp23-PB 186 CG4463-PB 60..179 68..183 275 48.3 Plus
Hsp23-PA 186 CG4463-PA 60..179 68..183 275 48.3 Plus
Hsp26-PB 208 CG4183-PB 80..194 70..183 268 44.3 Plus
Hsp26-PA 208 CG4183-PA 80..194 70..183 268 44.3 Plus
Hsp67Bc-PA 199 CG4190-PA 81..180 79..178 246 47 Plus
Hsp67Ba-PA 445 CG4167-PA 122..237 74..185 235 40.8 Plus
CG4461-PA 200 CG4461-PA 1..193 1..171 227 35.1 Plus
CG7409-PA 154 CG7409-PA 15..148 43..173 200 37 Plus
CG14207-PC 154 CG14207-PC 62..147 75..161 194 43.7 Plus
CG14207-PD 183 CG14207-PD 91..176 75..161 194 43.7 Plus
CG14207-PA 183 CG14207-PA 91..176 75..161 194 43.7 Plus
CG14207-PB 192 CG14207-PB 100..185 75..161 194 43.7 Plus
Hsp22-PB 174 CG4460-PB 49..162 64..176 187 42.2 Plus
Hsp22-PA 174 CG4460-PA 49..162 64..176 187 42.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19527-PA 189 GI19527-PA 1..188 1..186 912 92 Plus
Dmoj\GI13087-PA 209 GI13087-PA 1..182 1..173 294 38.3 Plus
Dmoj\GI13085-PA 185 GI13085-PA 60..175 69..181 281 49.1 Plus
Dmoj\GI12247-PA 211 GI12247-PA 88..188 74..173 271 50 Plus
Dmoj\GI13089-PA 193 GI13089-PA 65..185 67..181 248 43 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17594-PA 202 GL17594-PA 1..186 1..186 921 92.5 Plus
Dper\GL22632-PA 204 GL22632-PA 79..180 73..173 288 52.4 Plus
Dper\GL22446-PA 184 GL22446-PA 60..166 68..173 276 48.6 Plus
Dper\GL22443-PA 184 GL22443-PA 60..166 68..173 276 48.6 Plus
Dper\GL22447-PA 225 GL22447-PA 1..193 1..173 264 40.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18238-PA 187 GA18238-PA 1..187 1..187 929 92.5 Plus
Dpse\GA18238-PB 156 GA18238-PB 1..132 1..132 673 93.2 Plus
Dpse\GA18011-PA 204 GA18011-PA 79..180 73..173 288 52.4 Plus
Dpse\GA18202-PA 184 GA18202-PA 60..166 68..173 276 48.6 Plus
Dpse\GA18205-PA 225 GA18205-PA 1..193 1..173 264 40.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15521-PA 187 GM15521-PA 1..187 1..187 986 100 Plus
Dsec\GM25143-PA 213 GM25143-PA 1..185 1..173 284 40.8 Plus
Dsec\GM25142-PA 183 GM25142-PA 49..180 63..187 282 46.2 Plus
Dsec\GM24881-PA 211 GM24881-PA 80..184 70..173 270 46.7 Plus
Dsec\GM24882-PA 199 GM24882-PA 80..175 78..173 251 47.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25025-PA 187 GD25025-PA 1..187 1..187 986 100 Plus
Dsim\GD14177-PA 213 GD14177-PA 1..185 1..173 281 40.8 Plus
Dsim\GD12933-PA 211 GD12933-PA 80..184 70..173 270 46.7 Plus
Dsim\GD12934-PA 199 GD12934-PA 80..175 78..173 251 47.9 Plus
Dsim\GD14176-PA 177 GD14176-PA 66..174 74..187 236 43.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21096-PA 189 GJ21096-PA 1..189 1..187 917 92.1 Plus
Dvir\GJ13835-PA 211 GJ13835-PA 1..210 1..185 306 36.2 Plus
Dvir\GJ13834-PA 186 GJ13834-PA 60..176 68..181 283 47 Plus
Dvir\GJ13836-PA 214 GJ13836-PA 86..186 74..173 279 51.5 Plus
Dvir\GJ11479-PA 216 GJ11479-PA 87..205 74..187 279 48.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23172-PA 187 GK23172-PA 1..187 1..187 938 95.2 Plus
Dwil\GK17636-PA 186 GK17636-PA 65..165 74..173 272 49.5 Plus
Dwil\GK17637-PA 227 GK17637-PA 1..210 1..187 263 38.2 Plus
Dwil\GK16566-PA 216 GK16566-PA 88..209 74..186 256 45.6 Plus
Dwil\GK19253-PA 192 GK19253-PA 80..181 79..180 251 49.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11545-PA 187 GE11545-PA 1..187 1..187 966 97.9 Plus
Dyak\GE20832-PA 186 GE20832-PA 66..179 74..183 276 49.1 Plus
Dyak\GE20833-PA 212 GE20833-PA 1..186 1..173 275 40.6 Plus
Dyak\GE21250-PA 208 GE21250-PA 80..184 70..173 262 45.7 Plus
Dyak\Hsp67Bc-PA 199 GE21251-PA 80..175 78..173 250 47.9 Plus

GH01960.hyp Sequence

Translation from 46 to 609

> GH01960.hyp
MSVVPLMFRDWWDELDFPMRTSRLLDQHFGQGLKRDDLMSSVWNSRPTVL
RSGYLRPWHTNSLQKQESGSTLNIDSEKFEVILDVQQFSPSEITVKVADK
FVIVEGKHEEKQDEHGYVSRQFSRRYQLPSDVNPDTVTSSLSSDGLLTIK
APMKALPPPQTERLVQITQTGPSSKEDNAKKVETSTA*

GH01960.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-PC 187 CG4533-PC 1..187 1..187 970 100 Plus
l(2)efl-PA 187 CG4533-PA 1..187 1..187 970 100 Plus
Hsp27-PB 213 CG4466-PB 1..185 1..173 312 41.4 Plus
Hsp27-PA 213 CG4466-PA 1..185 1..173 312 41.4 Plus
Hsp23-PB 186 CG4463-PB 60..179 68..183 275 48.3 Plus