Clone GH01967 Report

Search the DGRC for GH01967

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:19
Well:67
Vector:pOT2
Associated Gene/Transcriptgem-RA
Protein status:GH01967.pep: gold
Preliminary Size:1411
Sequenced Size:5098

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30011 2002-01-03 Blastp of sequenced clone
CG30011 2003-01-01 Sim4 clustering to Release 3
gem 2008-04-29 Release 5.5 accounting
gem 2008-08-15 Release 5.9 accounting
gem 2008-12-18 5.12 accounting

Clone Sequence Records

GH01967.complete Sequence

5098 bp (5098 high quality bases) assembled on 2005-08-22

GenBank Submission: AY075312

> GH01967.complete
TTGGCTGCCGCTCGACCAAGGTTCTGCCGCACAAAATGCTCGTCTCTTTG
GGCTTTTCGAAGCCTCGCTTCGTCGGATTAAAAGTGCTCCTCTAGCACGC
TCGCAAGTTAGTCCGGCCACAAAAATAAGAAAACCCAAAACTTTAAAATA
TAACCATAACCCATTGAATTGGCAGAAAAAGTTTTCACCACCCACCGAAT
CGTACCGTTATCGTTATCGCGAAACAGAATCCACAGATAAAAAACGTTCC
GTTTCACTTCGTCGTAAATACAGTGCTAAATCGTGTGAAACAAACTAAAG
TCGCTGCAAAAACAGCCTAATTTGTCTAATGAAAGCCGAGAGCATTTGTG
AATAATTAGCCCCGAAAAAAAACCTGTTCGCAGTCACCGCAAAAATTAGG
CCCCAATAAAAAGTGACGATCCAAGAAACTGGCATCTCGCCCGCTTGATA
TATAACACCCCAACACAAACGTAAAGTTCGCGATAACACCTATACAAAAT
AAAAAAAAGAGAGAAACCAAATCCAGCGAATCAACTTCAGAGTAAAGTCG
CAAAGTCAGTGCAAGCCAGAGCAAAATCGTCGAGCAAACCGAGTAGTTGT
CCAAACGTTAAGTCGCAAAAAGTCTAGGAAACCACCCCTACAATCGCTAT
CAGATTTCTAGTGCTAATACGATCGAAATAATGTCAGCCTTCTGACAGTG
TATAACAAATAAAGTTACATAATCACCGTTGCAAATCCAATTTTTTTTTG
GAAGCGAACCCCCAAAAGTGCCCAATTGGAATGTCGAATATCTGACAGTG
ACCAAACAAACAGCGAAATCAGTCGAAACCAAACTCAAGAGAGAACCCCA
ACTGCAGAAGGAAAGCGAGCGAAGTTGTTATCAGTGAAAATATACACACA
TATATATTCGATTTCAGCGTAAACAACTACTATATAATGTCCGTCGCCAT
CTGACAGTGGTCCAAACAACCAGCACAAAGAGCTAGAAGTCGCCGCAGCC
AGTGACAAGTTTCACCACAGCGAGTGAGACCTGTACCGTAGAACCAACAC
AAGACACTTAAGCTTGCAACACGGGCTAACCAATTCAGCGATAAATGGAG
AAATCTGAAATACGACTGCAACGCATGTCTAATGAATATCAGTCGCAATC
GAGCTATATGTACCTCCGGACCAAGATGCTGTTAAAAATCGAGAATACCC
TACTTCGAAGCCATCGTCAGCGCGAGACCACCGGTATCAAGAAACTATAC
AATTCGTTTTTCGTATTGTTTTAATTTGCCCCCCCGGCCAGTCCCGAACC
CTCTCAAAAGGCCCCAAGAACACAAAACGCACAAAAGCAAAATTTACAAT
TCCACTCAACTGTGAGCCAAGTTAGAAAAAGTTACAAGAAAGCAAGTTAT
ACATGTTATACCTACGTTAAATAAATATATGAATAAACTAGAGATATTAT
TTGGTTGTTAGTAGAACTCACGTCAAGTGCATATGGTTAGCCCTCGTATA
TCCAAAGTGCTGTGCGACGAACGAACGATTAAGTAAATAAGTGTGTCATA
TGAGCATTTTGAACAAGCCAAGCCAAAATGTTAGCCTAAGCAAGTAATCA
GTAAGTGTTGGTCGATCAATATACGGTTTCTACTTCGAATATTACTATTA
CCATCAATCACTTTTGTTGCATTTCGCATTGCACCAAAAAACTTGAGCAA
AATTGCTGGCGAAATTACTCCGGTCGGAAGTGGTGTTTCGTAATACGGGT
GAGAGCGATCACGGTCAAATAATTCAGGAGGATATCAAACAACAAACAAC
AATAAGCTTGGACTAATAGAGACCAGAACGCGATTCTAACGCCGTTAACT
CACGTACCGAATGGCGCTTTCGTTTCTATCCCAAAACTCCGGTCTGTTGG
ATTTACAAAGCATATTCGATCCACAATATACTCATCATCAACAACAACAA
CAACAACTACTACATTTGAGCCACCACCCTCAACATCACATTCAACAACA
CCAAAATCAACAACTACAACAACAAGCGGAGCAAATTCAACAACATCAAC
AAGAACGCACCCTTTCAACAAAGTTCGATTTGAACCTGTTCAACGAACTC
GACCAAATGGAATTCAACAATTTAAATCGCAGTCAATATCAGAATAATAA
TAATAACAACAGTATCAGCAATAATCAAAACTCCAACAACAATACCAACA
CCACTAACGGTATCAGTGAAAATCTAAATCAGATCCAAAACCGCCACTTC
ATCAGCGGCTACCACCATCAGCATATTGGATCGGACTATGAGCAAGTGAT
CAACTTTGTTGACTCGCCGCCAAACTCAGAGGAATCGTGGACAGACGGAC
AGTCGAAGGACTCGCCGGGACCGCAGATCATCGACGTGCAGACCATTTAC
CTGAACAGCGGCTCACGCAAAAGACGAATGGATTGGGACTCTTTGGACAT
TGGCCAAAGTGAGAACTCACCCACAGCATCGCAGAGCGGCGACTTGCCCT
CCAAAGTGGCCCATCAGGAGAAGGAAAAGCACAAGCGCGAGAAGCACTCG
GGTCGCAGCAGCTGGAGCGATGATATCGGCTTCGATCTGAACGCCGAGTT
TAACAGCAACTCATATTTGAACAATGAGAACTTCCTGTCGTTCTCGCCCA
CGCTGACCACCCTGAAGCAGGAGCCCCAGACGGATCAGATCAAGCCGAGC
CCCAAGGTATCCCTGGATAATGCCTCCGCATCGCCCTCCATCGCCATTGC
CAAGTTGGATGAGGTCCAGAACTCGCCGTCGCAGGCTATTTCTGGCCAAG
ACTCGGCTAACGGATCGGGATCGGCCGCAAACGGCAAGCATGATGTAAAC
TCCGGACTCGCCTGCGGGTGTGGCTCTCCTCAGGGTTCACCACTAGCCAA
CGCCGAGTATGAGTTGAACGAAAAGGGAAAGCCCCAGCAACTTAGCGTTT
TGGATCCTGCTAAAATCGAGATCGGTTCGGCCAACGGAGCTACCCATGCC
GAGGATCACAAATTTCAGTACATTTTGGCAGCGGCCACTTCGATCGCCAC
CAAGAACAATGAGGAGACTTTGACGTACCTCAACCAAGGCCAGAGCTACG
AAATAAAGCTGAAGAAGATCGGAGACCTGTCCCTCTATAGGGATAAGATA
CTGAAGAGCGTGATCAAGATCTGTTTCCACGAGCGCCGCCTGCAGTTCAT
GGAGCGCGAACAGATGCAGCAATGGCAGCAATCCCGCCCAGGCGAACGCA
TCATTGAGGTGGACGTACCGCTTTCGTACGGCCTCTGCCACGTGTCGCAG
CCGTTGAGCTCCGGCTCACTGAACACTGTCGAGATCTTCTGGGACCCACT
GAAGGAGGTCGGCGTCTACATCAAGGTCAACTGCATTTCAACCGAATTTA
CCCCAAAGAAGCACGGCGGCGAGAAGGGTGTGCCCTTCCGACTGCAAATT
GAAACCTATATAGAAAACACAAACAGTGCCACCGCCAGCGGCTCGGGCGG
CAGCAACAACAGCGCCATCGCCAGTGGCAGCGGAAGCAGTGGCTCCGCTG
CACCAGCATCTCCGGAACGGACACCCAGTGCCGGCAGCAATGGTAAACAG
GCGGTCCACGCAGCTGCCTGCCAGATCAAGGTTTTTAAGCTAAAAGGAGC
TGATCGCAAACATAAACAGGATCGGGAGAAGATCCAGAAGCGACCGCAAT
CGGAGCAGGAGAAGTTCCAGCCCAGCTACGAGTGTACCATCATGAACGAT
ATATCCCTGGACCTGGTGATGTCCGCCACCACAACCGGCTGCTACAGTCC
CGAATATATGAAACTTTGGCCAAACTCGCCCGTGCACATACCCAAGTACG
ATGGAATGCTTCCGTTTGCGCCAAGTGCAGCATCGCCGGCTACCAGCAGC
AGCCCCATAGCCATCAACTCGGTGACATCGACCAACTCGCCCACCCTCAA
GCTGATGGACGCCACAAACATGGTCTCACCGCAGCATGTGCCCGCTGACA
TGGACGATTATAGCCAGAACATAATGCCGGAATCGACGCCCTCGCAAGTG
ACGCAGTGGCTGACCAATCATCGCCTCACGGCCTATCTTTCAACGTTTGC
ACAGTTCTCGGGAGCGGATATCATGCGCATGTCCAAGGAGGATTTGATTC
AAATTTGCGGCCTGGCCGATGGCATTCGCATGTTCAACATTTTGCGCGCC
AAAACTATTGCTCCCAGGCTAACGTTGTACGCCAGCGTGGATGGATGCAG
CTACAATGCCATCTACTTGTTGTCGAACACGGCCAAGGAGCTGCAGCAGA
AGCTTTTCAAGATGCCCGGCTTCTACGAGTTCATGGCCAAGGCCAGTGCC
CAGGAGAACGGAGCCGGTGGAGCAGCCACTGCAGCTGCTGCAGCACTCTT
CAACAATTGGGGGATGCACTCCAAGTATTCGGGCAGCGGCTCCAATATCT
TCAACGACGCCAACAAGAGCTGCGTGTACATATCGGGGCCATCGGGCATC
CTTGTGACCATCACCGACGAGGTGCTGAACAACGAGATCAAGGACGGCAG
CCTCTACGCGCTGGAGGTGCAGGCCGGCAAGGTGATCCTTAAGCTGATCA
ACAAGCAGGACAACAACTAAGCGATGTTCTGGCAACGCGTATGCACTGCA
GTAGAGACCACCCGAGCAATCAAGTATAGTTTATAGCATTTACACGCAGT
AAGATGGCACATCGAAACCGTTTTCTATATAGGTTTTAATTTGTATGAGA
TTTCGCGCAGCAATTTTGAACAAGTAAAAAGCAAGCAGCCTCTAACCCTG
TTCCCTAAAATCTTTGTTAAAGAACTAGTGCAAAATATTTAAGTTTCGTT
TTCAGTTCTCATTTTAAGTTTTGTTTATTTTATATGTATTTTATACCACC
TACGATATACGACTACATATGCACATTTAATTCTCCGATGCGATTGGATT
TCGATTCGTTCTTTTCCTACTTTTAATTTCTTTTATCGTTATGGCGTATG
CTTATCACATAAAGAACTATTATATATTTGTTTGTAGAACCACATCAATA
TCAATTGTTTGAAGTAGAAAGAAAAAACCCAAAAAAAAAAAAAAAAAA

GH01967.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
gem-RA 6406 gem-RA 1160..6255 1..5096 25465 99.9 Plus
gem-RC 6403 gem-RC 3501..6254 2343..5096 13755 99.9 Plus
gem-RC 6403 gem-RC 1120..3464 1..2345 11725 100 Plus
gem-RD 6476 gem-RD 1070..3414 1..2345 11725 100 Plus
gem-RD 6476 gem-RD 3451..4914 2343..3806 7320 100 Plus
gem-RD 6476 gem-RD 5041..6330 3807..5096 6435 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6012899..6015130 1..2232 11035 99.8 Plus
chr2R 21145070 chr2R 6024142..6025019 4203..5080 4360 99.8 Plus
chr2R 21145070 chr2R 6020295..6020772 3155..3632 2375 99.8 Plus
chr2R 21145070 chr2R 6019327..6019713 2625..3011 1890 99.2 Plus
chr2R 21145070 chr2R 6016375..6016585 2343..2553 1055 100 Plus
chr2R 21145070 chr2R 6023015..6023219 3807..4011 1025 100 Plus
chr2R 21145070 chr2R 6021387..6021564 3629..3806 860 98.9 Plus
chr2R 21145070 chr2R 6019852..6019996 3012..3156 725 100 Plus
chr2R 21145070 chr2R 6023289..6023404 4012..4127 580 100 Plus
chr2R 21145070 chr2R 6016132..6016246 2230..2344 575 100 Plus
chr2R 21145070 chr2R 6024007..6024082 4127..4202 380 100 Plus
chr2R 21145070 chr2R 6019173..6019246 2551..2624 370 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10125346..10127577 1..2232 11160 100 Plus
2R 25286936 2R 10136595..10137488 4203..5096 4455 99.9 Plus
2R 25286936 2R 10132748..10133225 3155..3632 2390 100 Plus
2R 25286936 2R 10131774..10132160 2625..3011 1935 100 Plus
2R 25286936 2R 10128821..10129031 2343..2553 1055 100 Plus
2R 25286936 2R 10135468..10135672 3807..4011 1025 100 Plus
2R 25286936 2R 10133840..10134017 3629..3806 890 100 Plus
2R 25286936 2R 10132305..10132449 3012..3156 725 100 Plus
2R 25286936 2R 10135742..10135857 4012..4127 580 100 Plus
2R 25286936 2R 10128578..10128692 2230..2344 575 100 Plus
2R 25286936 2R 10136460..10136535 4127..4202 380 100 Plus
2R 25286936 2R 10131621..10131694 2551..2624 370 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10126545..10128776 1..2232 11160 100 Plus
2R 25260384 2R 10137794..10138687 4203..5096 4455 99.8 Plus
2R 25260384 2R 10133947..10134424 3155..3632 2390 100 Plus
2R 25260384 2R 10132973..10133359 2625..3011 1935 100 Plus
2R 25260384 2R 10130020..10130230 2343..2553 1055 100 Plus
2R 25260384 2R 10136667..10136871 3807..4011 1025 100 Plus
2R 25260384 2R 10135039..10135216 3629..3806 890 100 Plus
2R 25260384 2R 10133504..10133648 3012..3156 725 100 Plus
2R 25260384 2R 10136941..10137056 4012..4127 580 100 Plus
2R 25260384 2R 10129777..10129891 2230..2344 575 100 Plus
2R 25260384 2R 10137659..10137734 4127..4202 380 100 Plus
2R 25260384 2R 10132820..10132893 2551..2624 370 100 Plus
Blast to na_te.dros performed 2019-03-16 06:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6876 3464..3589 161 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2835 3466..3918 156 53 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6711..6859 3443..3590 139 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2420 3472..3590 129 61.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 129..213 3472..3552 128 63.5 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9159..9243 3472..3552 128 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6801..6896 3466..3560 126 60.4 Plus
roo 9092 roo DM_ROO 9092bp 1041..1130 3465..3560 123 64.9 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 14..59 2135..2180 122 73.9 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7052..7097 2135..2180 122 73.9 Plus

GH01967.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:15:32 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6024008..6024082 4128..4202 100 -> Plus
chr2R 6021389..6021564 3631..3806 98 -> Plus
chr2R 6023015..6023219 3807..4011 100 -> Plus
chr2R 6016377..6016583 2345..2551 100 -> Plus
chr2R 6012899..6014830 1..1932 99 == Plus
chr2R 6014955..6015040 2057..2142 100 == Plus
chr2R 6015107..6015130 2209..2232 100 -> Plus
chr2R 6016135..6016246 2233..2344 100 -> Plus
chr2R 6019174..6019246 2552..2624 100 -> Plus
chr2R 6019327..6019713 2625..3011 99 -> Plus
chr2R 6019852..6019996 3012..3156 100 -> Plus
chr2R 6020297..6020770 3157..3630 99 -> Plus
chr2R 6023289..6023404 4012..4127 100 -> Plus
chr2R 6024142..6025019 4203..5080 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:34:47 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
gem-RA 1..2760 1861..4620 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:51:26 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
gem-RA 1..2760 1861..4620 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:39:22 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
gem-RA 1..2760 1861..4620 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:57:42 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
gem-RA 1..2760 1861..4620 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:15:23 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
gem-RA 1..2760 1861..4620 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:34:46 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
gem-RA 1..5080 1..5080 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:51:25 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
gem-RA 1059..6138 1..5080 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:22 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
gem-RA 1059..6138 1..5080 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:57:42 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
gem-RA 1..5080 1..5080 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:15:23 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
gem-RA 1..4930 151..5080 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:15:32 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10136461..10136535 4128..4202 100 -> Plus
2R 10125346..10127577 1..2232 100 -> Plus
2R 10128581..10128692 2233..2344 100 -> Plus
2R 10128823..10129029 2345..2551 100 -> Plus
2R 10131622..10131694 2552..2624 100 -> Plus
2R 10131774..10132160 2625..3011 100 -> Plus
2R 10132305..10132449 3012..3156 100 -> Plus
2R 10132750..10133223 3157..3630 100 -> Plus
2R 10133842..10134017 3631..3806 100 -> Plus
2R 10135468..10135672 3807..4011 100 -> Plus
2R 10135742..10135857 4012..4127 100 -> Plus
2R 10136595..10137472 4203..5080 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:15:32 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10136461..10136535 4128..4202 100 -> Plus
2R 10125346..10127577 1..2232 100 -> Plus
2R 10128581..10128692 2233..2344 100 -> Plus
2R 10128823..10129029 2345..2551 100 -> Plus
2R 10131622..10131694 2552..2624 100 -> Plus
2R 10131774..10132160 2625..3011 100 -> Plus
2R 10132305..10132449 3012..3156 100 -> Plus
2R 10132750..10133223 3157..3630 100 -> Plus
2R 10133842..10134017 3631..3806 100 -> Plus
2R 10135468..10135672 3807..4011 100 -> Plus
2R 10135742..10135857 4012..4127 100 -> Plus
2R 10136595..10137472 4203..5080 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:15:32 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10136461..10136535 4128..4202 100 -> Plus
2R 10125346..10127577 1..2232 100 -> Plus
2R 10128581..10128692 2233..2344 100 -> Plus
2R 10128823..10129029 2345..2551 100 -> Plus
2R 10131622..10131694 2552..2624 100 -> Plus
2R 10131774..10132160 2625..3011 100 -> Plus
2R 10132305..10132449 3012..3156 100 -> Plus
2R 10132750..10133223 3157..3630 100 -> Plus
2R 10133842..10134017 3631..3806 100 -> Plus
2R 10135468..10135672 3807..4011 100 -> Plus
2R 10135742..10135857 4012..4127 100 -> Plus
2R 10136595..10137472 4203..5080 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:22 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6016328..6016534 2345..2551 100 -> Plus
arm_2R 6019127..6019199 2552..2624 100 -> Plus
arm_2R 6012851..6015082 1..2232 100 -> Plus
arm_2R 6016086..6016197 2233..2344 100 -> Plus
arm_2R 6019279..6019665 2625..3011 100 -> Plus
arm_2R 6019810..6019954 3012..3156 100 -> Plus
arm_2R 6020255..6020728 3157..3630 100 -> Plus
arm_2R 6021347..6021522 3631..3806 100 -> Plus
arm_2R 6022973..6023177 3807..4011 100 -> Plus
arm_2R 6023247..6023362 4012..4127 100 -> Plus
arm_2R 6023966..6024040 4128..4202 100 -> Plus
arm_2R 6024100..6024977 4203..5080 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:29:39 Download gff for GH01967.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10136941..10137056 4012..4127 100 -> Plus
2R 10137660..10137734 4128..4202 100 -> Plus
2R 10130022..10130228 2345..2551 100 -> Plus
2R 10132821..10132893 2552..2624 100 -> Plus
2R 10126545..10128776 1..2232 100 -> Plus
2R 10129780..10129891 2233..2344 100 -> Plus
2R 10132973..10133359 2625..3011 100 -> Plus
2R 10133504..10133648 3012..3156 100 -> Plus
2R 10133949..10134422 3157..3630 100 -> Plus
2R 10135041..10135216 3631..3806 100 -> Plus
2R 10136667..10136871 3807..4011 100 -> Plus
2R 10137794..10138671 4203..5080 100   Plus

GH01967.pep Sequence

Translation from 1860 to 4619

> GH01967.pep
MALSFLSQNSGLLDLQSIFDPQYTHHQQQQQQLLHLSHHPQHHIQQHQNQ
QLQQQAEQIQQHQQERTLSTKFDLNLFNELDQMEFNNLNRSQYQNNNNNN
SISNNQNSNNNTNTTNGISENLNQIQNRHFISGYHHQHIGSDYEQVINFV
DSPPNSEESWTDGQSKDSPGPQIIDVQTIYLNSGSRKRRMDWDSLDIGQS
ENSPTASQSGDLPSKVAHQEKEKHKREKHSGRSSWSDDIGFDLNAEFNSN
SYLNNENFLSFSPTLTTLKQEPQTDQIKPSPKVSLDNASASPSIAIAKLD
EVQNSPSQAISGQDSANGSGSAANGKHDVNSGLACGCGSPQGSPLANAEY
ELNEKGKPQQLSVLDPAKIEIGSANGATHAEDHKFQYILAAATSIATKNN
EETLTYLNQGQSYEIKLKKIGDLSLYRDKILKSVIKICFHERRLQFMERE
QMQQWQQSRPGERIIEVDVPLSYGLCHVSQPLSSGSLNTVEIFWDPLKEV
GVYIKVNCISTEFTPKKHGGEKGVPFRLQIETYIENTNSATASGSGGSNN
SAIASGSGSSGSAAPASPERTPSAGSNGKQAVHAAACQIKVFKLKGADRK
HKQDREKIQKRPQSEQEKFQPSYECTIMNDISLDLVMSATTTGCYSPEYM
KLWPNSPVHIPKYDGMLPFAPSAASPATSSSPIAINSVTSTNSPTLKLMD
ATNMVSPQHVPADMDDYSQNIMPESTPSQVTQWLTNHRLTAYLSTFAQFS
GADIMRMSKEDLIQICGLADGIRMFNILRAKTIAPRLTLYASVDGCSYNA
IYLLSNTAKELQQKLFKMPGFYEFMAKASAQENGAGGAATAAAAALFNNW
GMHSKYSGSGSNIFNDANKSCVYISGPSGILVTITDEVLNNEIKDGSLYA
LEVQAGKVILKLINKQDNN*

GH01967.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12780-PA 899 GF12780-PA 1..899 1..919 3841 83 Plus
Dana\GF11678-PA 694 GF11678-PA 295..480 385..611 216 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24145-PA 915 GG24145-PA 1..915 1..919 3955 90 Plus
Dere\GG21828-PA 888 GG21828-PA 489..674 385..611 217 27.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21767-PA 957 GH21767-PA 1..957 1..919 3409 73.5 Plus
Dgri\GH22029-PA 1344 GH22029-PA 945..1130 385..611 222 28.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
gem-PG 919 CG30011-PG 1..919 1..919 4784 100 Plus
gem-PA 919 CG30011-PA 1..919 1..919 4784 100 Plus
gem-PC 932 CG30011-PC 1..932 1..919 4760 98.6 Plus
gem-PF 270 CG30011-PF 1..270 650..919 1390 100 Plus
grh-PO 698 CG42311-PO 299..484 385..611 209 27.3 Plus
grh-PN 729 CG42311-PN 299..484 385..611 209 27.3 Plus
grh-PK 784 CG42311-PK 354..539 385..611 209 27.3 Plus
grh-PH 1032 CG42311-PH 633..818 385..611 209 27.3 Plus
grh-PP 1063 CG42311-PP 633..818 385..611 209 27.3 Plus
grh-PI 1063 CG5058-PA 633..818 385..611 209 27.3 Plus
grh-PL 1302 CG42311-PL 903..1088 385..611 209 27.3 Plus
grh-PJ 1333 CG5058-PD 903..1088 385..611 209 27.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19314-PA 1007 GI19314-PA 656..1007 576..919 1542 85.6 Plus
Dmoj\GI19118-PA 1332 GI19118-PA 933..1118 385..611 221 28.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11578-PA 931 GL11578-PA 1..931 1..919 3758 79.7 Plus
Dper\GL17227-PA 706 GL17227-PA 307..492 385..611 214 27.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24777-PA 929 GA24777-PA 1..929 1..919 3753 79.4 Plus
Dpse\GA30279-PA 1360 GA30279-PA 922..1107 385..611 218 27.3 Plus
Dpse\GA30279-PB 1321 GA30279-PB 922..1107 385..611 218 27.3 Plus
Dpse\GA30279-PC 1046 GA30279-PC 647..832 385..611 216 27.3 Plus
Dpse\GA30279-PE 799 GA30279-PE 361..546 385..611 216 27.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21189-PA 926 GM21189-PA 1..926 1..919 4794 96.4 Plus
Dsec\GM21828-PA 697 GM21828-PA 298..483 385..611 215 27.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10717-PA 837 GD10717-PA 1..837 83..919 4292 95.5 Plus
Dsim\GD11322-PA 697 GD11322-PA 298..483 385..611 215 27.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22192-PA 1008 GJ22192-PA 1..1008 1..919 3337 70.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10687-PA 948 GK10687-PA 1..948 1..919 3231 70.4 Plus
Dwil\GK22232-PA 698 GK22232-PA 298..483 385..611 219 28.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19341-PA 924 GE19341-PA 1..924 1..919 3950 91.8 Plus
Dyak\grh-PA 698 GE11905-PA 299..484 385..611 215 27.3 Plus

GH01967.hyp Sequence

Translation from 1860 to 4619

> GH01967.hyp
MALSFLSQNSGLLDLQSIFDPQYTHHQQQQQQLLHLSHHPQHHIQQHQNQ
QLQQQAEQIQQHQQERTLSTKFDLNLFNELDQMEFNNLNRSQYQNNNNNN
SISNNQNSNNNTNTTNGISENLNQIQNRHFISGYHHQHIGSDYEQVINFV
DSPPNSEESWTDGQSKDSPGPQIIDVQTIYLNSGSRKRRMDWDSLDIGQS
ENSPTASQSGDLPSKVAHQEKEKHKREKHSGRSSWSDDIGFDLNAEFNSN
SYLNNENFLSFSPTLTTLKQEPQTDQIKPSPKVSLDNASASPSIAIAKLD
EVQNSPSQAISGQDSANGSGSAANGKHDVNSGLACGCGSPQGSPLANAEY
ELNEKGKPQQLSVLDPAKIEIGSANGATHAEDHKFQYILAAATSIATKNN
EETLTYLNQGQSYEIKLKKIGDLSLYRDKILKSVIKICFHERRLQFMERE
QMQQWQQSRPGERIIEVDVPLSYGLCHVSQPLSSGSLNTVEIFWDPLKEV
GVYIKVNCISTEFTPKKHGGEKGVPFRLQIETYIENTNSATASGSGGSNN
SAIASGSGSSGSAAPASPERTPSAGSNGKQAVHAAACQIKVFKLKGADRK
HKQDREKIQKRPQSEQEKFQPSYECTIMNDISLDLVMSATTTGCYSPEYM
KLWPNSPVHIPKYDGMLPFAPSAASPATSSSPIAINSVTSTNSPTLKLMD
ATNMVSPQHVPADMDDYSQNIMPESTPSQVTQWLTNHRLTAYLSTFAQFS
GADIMRMSKEDLIQICGLADGIRMFNILRAKTIAPRLTLYASVDGCSYNA
IYLLSNTAKELQQKLFKMPGFYEFMAKASAQENGAGGAATAAAAALFNNW
GMHSKYSGSGSNIFNDANKSCVYISGPSGILVTITDEVLNNEIKDGSLYA
LEVQAGKVILKLINKQDNN*

GH01967.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
gem-PG 919 CG30011-PG 1..919 1..919 4784 100 Plus
gem-PA 919 CG30011-PA 1..919 1..919 4784 100 Plus
gem-PC 932 CG30011-PC 1..932 1..919 4760 98.6 Plus
gem-PF 270 CG30011-PF 1..270 650..919 1390 100 Plus
grh-PO 698 CG42311-PO 299..484 385..611 209 27.3 Plus