Clone GH01984 Report

Search the DGRC for GH01984

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:19
Well:84
Vector:pOT2
Associated Gene/TranscriptOat-RA
Protein status:GH01984.pep: gold
Preliminary Size:1480
Sequenced Size:1498

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8782 2001-01-01 Release 2 assignment
CG8782 2001-07-04 Blastp of sequenced clone
CG8782 2003-01-01 Sim4 clustering to Release 3
Oat 2008-04-29 Release 5.5 accounting
Oat 2008-08-15 Release 5.9 accounting
Oat 2008-12-18 5.12 accounting

Clone Sequence Records

GH01984.complete Sequence

1498 bp (1498 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047517

> GH01984.complete
CCGCGATCCGCGAGTACAAGTGCCATACCCCATCGACTCGCGAGATACAT
ACATACATACTATCGCCAACATGTTCGCCAAGCTATCAGCCCGCGGGATC
GCCACCCGCATGAGCTTCTTGGCACAGAAGACAGCTTCCCAGGAGACGAC
GGCCGCCGCCGGATCCCGTTCCGAACTCGTCTATGCCAGGGAGAACAAGT
ACGGCGCCCACAACTACCACCCACTGCCCGTGGCCCTGACCAAGGGCGAG
GGCGTGTTTGTCTGGGATGTGGAGGGCAAGCGCTACTTCGACTATCTGAG
CGCCTACTCGGCGGTCAACCAGGGTCACTGCCATCCCAAGATCGTAGCGG
CACTCACAGCACAGGCCTCCAAGTTGGCCTTGACATCGCGTGCCTTCTAT
TCGGATGTCCTTGGAGAGTACGAGGAGTACGTGACCAAGCTCTTTGGCTT
CGACAAGGTGCTGCCCATGAACACGGGCGTTGAGGGCGGAGAAACCGCCT
GCAAGTTGGCCCGCAAGTGGGGCTACCTGGAGAAGAAGATACCTGCCAAC
CAGGCAAAGATCATCTTCGCGCGCAACAACTTCTGGGGACGCACCCTGTC
GGCGGTGTCCGCCTCCAATGATCCCAGTAGCTACGAGGGATTCGGACCCT
TCATGCCCGGATTCGAGCTGATCGAGTACGACAATGTGTCAGCGCTGGAG
GAGTCCCTCAAGGATCCGAATGTGTGCGCCTTCATGGTGGAGCCCATTCA
GGGAGAGGCTGGCGTGGTGGTGCCCAGTGATGGCTATCTGAAGAAGGTGC
GAGAGCTCTGCACCAAGTACAATGTGCTCTGGATTGCCGACGAGGTGCAG
ACAGGATTGGCCAGAACTGGAAAGCTGCTGGCCGTGGACTACGAGCAGGT
GCAGCCAGACATTCTGATCCTGGGAAAAGCACTGTCCGGAGGAATGTATC
CCGTGTCGGCGGTTCTCTGCAACGACCAGGTGATGCTGTGCATCAAGCCG
GGCGAGCACGGATCCACCTACGGAGGCAACCCCCTGGGCTGCCGAGTGGC
CATGGCCGCCTTGGAGGTTCTGCAGGAGGAGAAGCTGGCGGAGAACGCCT
TCAAAATGGGTGACCTGCTGCGCAACGAGCTGTCCACGCTGCCCAAGGAT
GTGGTGTCGGTGGTGCGCGGAAAGGGTCTGCTCAACGCCATCGTTATTAA
CCAGAAGTTCGATGCCTGGGAGGTGTGCCTCAGGCTAAAGGAGAACGGAC
TCCTGGCCAAGCCCACCCATGGCGACATTATTCGCTTCGCTCCTCCACTG
GTCATCAATGAGACCCAAATGCGCGAGAGCATCGACATAATCAGGAAAAC
CATTCTGTCCATGTAGATTTTGGTGTCAGTGGAGCACCGCTCATGTATAG
CGAATAGCGTTTAACAGAATGTAAATTAAGTTTTGTGGAAAGTCTGAAAT
AAAATACACTTTTAATACTTTTTATACCAGAAAAAAAAAAAAAAAAAA

GH01984.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Oat-RA 1673 Oat-RA 133..1614 1..1482 7410 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19636947..19637762 1205..390 4035 99.6 Minus
chr3L 24539361 chr3L 19638777..19639166 390..1 1950 100 Minus
chr3L 24539361 chr3L 19636616..19636890 1480..1206 1375 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19647611..19648426 1205..390 4080 100 Minus
3L 28110227 3L 19649441..19649830 390..1 1950 100 Minus
3L 28110227 3L 19647278..19647554 1482..1206 1385 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19640711..19641526 1205..390 4080 100 Minus
3L 28103327 3L 19642541..19642930 390..1 1950 100 Minus
3L 28103327 3L 19640378..19640654 1482..1206 1385 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:22:27 has no hits.

GH01984.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:23:24 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19636616..19636890 1206..1480 100 <- Minus
chr3L 19636947..19637761 391..1205 99 <- Minus
chr3L 19638777..19639166 1..390 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:06:11 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 1..1296 71..1366 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:07 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 1..1296 71..1366 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:30 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 1..1296 71..1366 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:36 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 1..1296 71..1366 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:07:33 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 1..1296 71..1366 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:49 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 20..1499 1..1480 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:07 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 20..1499 1..1480 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:30 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 22..1501 1..1480 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:36 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 20..1499 1..1480 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:07:33 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
Oat-RA 22..1501 1..1480 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:24 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19647280..19647554 1206..1480 100 <- Minus
3L 19647611..19648425 391..1205 100 <- Minus
3L 19649441..19649830 1..390 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:24 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19647280..19647554 1206..1480 100 <- Minus
3L 19647611..19648425 391..1205 100 <- Minus
3L 19649441..19649830 1..390 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:24 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19647280..19647554 1206..1480 100 <- Minus
3L 19647611..19648425 391..1205 100 <- Minus
3L 19649441..19649830 1..390 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:30 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19640380..19640654 1206..1480 100 <- Minus
arm_3L 19640711..19641525 391..1205 100 <- Minus
arm_3L 19642541..19642930 1..390 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:41 Download gff for GH01984.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19640380..19640654 1206..1480 100 <- Minus
3L 19640711..19641525 391..1205 100 <- Minus
3L 19642541..19642930 1..390 100   Minus

GH01984.hyp Sequence

Translation from 1 to 1365

> GH01984.hyp
RDPRVQVPYPIDSRDTYIHTIANMFAKLSARGIATRMSFLAQKTASQETT
AAAGSRSELVYARENKYGAHNYHPLPVALTKGEGVFVWDVEGKRYFDYLS
AYSAVNQGHCHPKIVAALTAQASKLALTSRAFYSDVLGEYEEYVTKLFGF
DKVLPMNTGVEGGETACKLARKWGYLEKKIPANQAKIIFARNNFWGRTLS
AVSASNDPSSYEGFGPFMPGFELIEYDNVSALEESLKDPNVCAFMVEPIQ
GEAGVVVPSDGYLKKVRELCTKYNVLWIADEVQTGLARTGKLLAVDYEQV
QPDILILGKALSGGMYPVSAVLCNDQVMLCIKPGEHGSTYGGNPLGCRVA
MAALEVLQEEKLAENAFKMGDLLRNELSTLPKDVVSVVRGKGLLNAIVIN
QKFDAWEVCLRLKENGLLAKPTHGDIIRFAPPLVINETQMRESIDIIRKT
ILSM*

GH01984.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Oat-PA 431 CG8782-PA 1..431 24..454 2226 100 Plus
CG11241-PA 508 CG11241-PA 80..500 76..451 372 28 Plus
CG11241-PC 518 CG11241-PC 80..484 76..435 355 28.4 Plus
CG11241-PB 518 CG11241-PB 80..484 76..435 355 28.4 Plus
CG8745-PA 494 CG8745-PA 37..438 72..442 297 25.6 Plus

GH01984.pep Sequence

Translation from 70 to 1365

> GH01984.pep
MFAKLSARGIATRMSFLAQKTASQETTAAAGSRSELVYARENKYGAHNYH
PLPVALTKGEGVFVWDVEGKRYFDYLSAYSAVNQGHCHPKIVAALTAQAS
KLALTSRAFYSDVLGEYEEYVTKLFGFDKVLPMNTGVEGGETACKLARKW
GYLEKKIPANQAKIIFARNNFWGRTLSAVSASNDPSSYEGFGPFMPGFEL
IEYDNVSALEESLKDPNVCAFMVEPIQGEAGVVVPSDGYLKKVRELCTKY
NVLWIADEVQTGLARTGKLLAVDYEQVQPDILILGKALSGGMYPVSAVLC
NDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGDLL
RNELSTLPKDVVSVVRGKGLLNAIVINQKFDAWEVCLRLKENGLLAKPTH
GDIIRFAPPLVINETQMRESIDIIRKTILSM*

GH01984.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Oat-PA 432 GF10718-PA 1..432 1..431 2146 92.6 Plus
Dana\GF23448-PA 466 GF23448-PA 38..458 53..428 401 28.9 Plus
Dana\GF19062-PA 495 GF19062-PA 17..450 32..431 314 25.3 Plus
Dana\GF10831-PA 486 GF10831-PA 67..483 58..428 198 24.1 Plus
Dana\GF10832-PA 326 GF10832-PA 22..323 148..428 159 23.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13385-PA 430 GG13385-PA 1..430 1..431 2223 96.1 Plus
Dere\GG13171-PA 502 GG13171-PA 74..494 53..428 387 28.6 Plus
Dere\GG13754-PA 494 GG13754-PA 17..450 32..431 313 25.3 Plus
Dere\GG13352-PA 486 GG13352-PA 67..486 58..431 229 24.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14619-PA 433 GH14619-PA 1..433 1..431 1990 82.9 Plus
Dgri\GH24027-PA 433 GH24027-PA 1..433 1..431 1986 82.7 Plus
Dgri\GH14768-PA 503 GH14768-PA 74..491 53..424 401 27.5 Plus
Dgri\GH17687-PA 495 GH17687-PA 9..450 19..431 331 25.9 Plus
Dgri\GH17185-PA 469 GH17185-PA 49..469 58..431 209 23.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
Oat-PA 431 CG8782-PA 1..431 1..431 2226 100 Plus
CG11241-PA 508 CG11241-PA 80..500 53..428 372 28 Plus
CG11241-PC 518 CG11241-PC 80..484 53..412 355 28.4 Plus
CG11241-PB 518 CG11241-PB 80..484 53..412 355 28.4 Plus
CG8745-PA 494 CG8745-PA 37..438 49..419 297 25.6 Plus
Gabat-PD 486 CG7433-PD 67..483 58..428 229 24.6 Plus
Gabat-PC 486 CG7433-PC 67..483 58..428 229 24.6 Plus
Gabat-PA 486 CG7433-PA 67..483 58..428 229 24.6 Plus
Gabat-PB 486 CG7433-PB 67..483 58..428 229 24.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13506-PA 431 GI13506-PA 1..431 1..431 1973 82.1 Plus
Dmoj\GI11871-PA 491 GI11871-PA 62..483 53..428 396 28.1 Plus
Dmoj\GI21508-PA 506 GI21508-PA 9..450 19..431 316 25.5 Plus
Dmoj\GI13950-PA 469 GI13950-PA 49..469 58..431 225 24.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20876-PA 433 GL20876-PA 1..433 1..431 2058 88.7 Plus
Dper\GL18115-PA 495 GL18115-PA 81..487 53..428 375 27.4 Plus
Dper\GL14846-PA 302 GL14846-PA 29..257 218..431 235 29.4 Plus
Dper\GL11898-PA 487 GL11898-PA 67..487 58..431 223 25.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21318-PA 433 GA21318-PA 1..433 1..431 2089 89.8 Plus
Dpse\GA10859-PA 509 GA10859-PA 81..501 53..428 396 28.2 Plus
Dpse\GA26338-PA 497 GA26338-PA 1..452 14..431 325 25.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16950-PA 431 GM16950-PA 1..431 1..431 2262 97.2 Plus
Dsec\GM22081-PA 508 GM22081-PA 80..500 53..428 390 28.4 Plus
Dsec\GM14750-PA 486 GM14750-PA 67..486 58..431 226 25.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12261-PA 137 GD12261-PA 1..136 1..136 712 97.8 Plus
Dsim\GD12262-PA 86 GD12262-PA 1..86 346..431 445 96.5 Plus
Dsim\GD12056-PA 508 GD12056-PA 80..500 53..428 382 28.6 Plus
Dsim\GD12648-PA 494 GD12648-PA 17..450 32..431 309 24.9 Plus
Dsim\GD12233-PA 486 GD12233-PA 67..486 58..431 231 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11867-PA 433 GJ11867-PA 1..433 1..431 1966 81.8 Plus
Dvir\GJ13565-PA 503 GJ13565-PA 74..495 53..428 404 29 Plus
Dvir\GJ19045-PA 500 GJ19045-PA 1..450 14..431 314 24.8 Plus
Dvir\GJ13734-PA 469 GJ13734-PA 49..469 58..431 222 23.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25792-PA 428 GK25792-PA 1..428 1..431 1981 85.2 Plus
Dwil\GK20568-PA 495 GK20568-PA 65..488 53..428 390 27.9 Plus
Dwil\GK24849-PA 495 GK24849-PA 17..450 32..431 347 26.4 Plus
Dwil\GK20289-PA 474 GK20289-PA 54..474 58..431 224 25.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22477-PA 430 GE22477-PA 1..430 1..431 2234 96.8 Plus
Dyak\GE19492-PA 474 GE19492-PA 46..466 53..428 380 28.2 Plus
Dyak\GE20050-PA 494 GE20050-PA 17..450 32..431 313 25.1 Plus
Dyak\GE22444-PA 486 GE22444-PA 67..486 58..431 228 25.2 Plus