Clone GH02020 Report

Search the DGRC for GH02020

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:20
Well:20
Vector:pOT2
Associated Gene/TranscriptCG14823-RD
Protein status:GH02020.pep: gold
Preliminary Size:1238
Sequenced Size:1066

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14823 2001-01-01 Release 2 assignment
CG14823 2003-02-22 Blastp of sequenced clone
CG14823 2008-04-29 Release 5.5 accounting
CG14823 2008-08-15 Release 5.9 accounting
CG14823 2008-12-18 5.12 accounting

Clone Sequence Records

GH02020.complete Sequence

1066 bp (1066 high quality bases) assembled on 2003-02-22

GenBank Submission: AY060603

> GH02020.complete
GAGAAGCCAGCTCGCCATGGAGCCCACATGCAGCAGCAGTGTGGCGGAAT
TGGCCAAATACAGTGAGGATGATGTGGAAACGGATGAGTCCAAGGTGGTG
GAGCATCAGGAATATGCCGAAGCGCTGTCAATGTCCGGGGAAAGTCGTAA
GCGGAAACGATGGACTCGAAGGTCCTGCTGCACTCGCCAAGTCCTGAGTA
CGGGCGCCATTTTCATCGCCCTTCTGCTCATCATCGGCGCCATTTACATG
CACTTAAGACAGAAGCATCATCTGGGCCGACTGCACATCAATCTCAAGGA
TCGGGGGCAAGTGGAGGTCCTGGAGGAGGACTTTCCCATGGTCACCGCTG
CGGGAGTGGGTGAGTGTGCCACAAGGACTCTTGTTCAATCGCTAAGAAGC
TCTTAGACTTCGGTTAATTTTATAAGCGGTTTATATTGTTGGGATAGTGG
TATTTTCTCTCTTTTTCTTTGTTTTGTTTTTTTTCTTTCCCAGCTGACTG
ATTAGAATTGCCATTAGATGAACCAGCAGATTTCAACGTTTCGAAATTAT
AGCGATAATAAATAAAAGCTTGTATTTATTACACAACAACTATGCAACGC
ATGCCCAGACCTCGACGATAACAACATTCCAGCCGCCTCCGACATCCTCC
CCAGAGCCCAGTGCCAAGTGCCTGGACTGCATGGCCACCACTGCCACGGA
TAATATTCCGGCAATCTGCAGGCACCGAGGACGACCAGAGGAGCCGTGCG
GCATTTATCGCATCTCCCACGTCTACTGGCAGGACGCACTCCGGATAATT
GACCCGGACGACTCACTCGCCCGGGACTACGGAAGATGCGTGGTGGATGT
CCAGTGCGCCGAGCGTATTGTGCGTAGCTATGTGCAGCGATATGGTGGCG
AGGATTGCAATGGAGACGGACGGATCGAGTGTCGGGATCATGTGAGGCTG
CACATGAGAGGACCCGGCGGCTGCCGCAGGCAGGAGCCACTGGGGAGCCT
GTCTGAGAGGAGATTGGAAAACTGCTTGAAATACAGGGGGATTACTTAAA
AAAAAAAAAAAAAAAA

GH02020.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-RD 1133 CG14823-RD 55..1105 1..1051 5255 100 Plus
CG14823-RB 1103 CG14823-RB 542..1100 493..1051 2795 100 Plus
CG14823-RA 1127 CG14823-RA 649..1099 601..1051 2255 100 Plus
CG14823-RB 1103 CG14823-RB 184..546 1..363 1800 99.7 Plus
CG14823-RA 1127 CG14823-RA 290..648 1..359 1795 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7058588..7059187 1..600 2955 99.5 Plus
chr3L 24539361 chr3L 7059775..7059999 601..825 1110 99.6 Plus
chr3L 24539361 chr3L 7060223..7060445 825..1047 1085 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7066368..7066967 1..600 3000 100 Plus
3L 28110227 3L 7068003..7068229 825..1051 1135 100 Plus
3L 28110227 3L 7067555..7067779 601..825 1125 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7059468..7060067 1..600 3000 100 Plus
3L 28103327 3L 7061103..7061329 825..1051 1135 100 Plus
3L 28103327 3L 7060655..7060879 601..825 1125 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:46:53 has no hits.

GH02020.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:47:53 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7060224..7060445 826..1047 99   Plus
chr3L 7058588..7059187 1..600 99 -> Plus
chr3L 7059775..7059999 601..825 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:06:29 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RA 1..343 17..359 100 == Plus
CG14823-RA 344..790 601..1047 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:21 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RA 1..343 17..359 100 == Plus
CG14823-RA 344..790 601..1047 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:49:52 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RA 1..343 17..359 100 == Plus
CG14823-RA 344..792 601..1049 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:42 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RA 1..343 17..359 100 == Plus
CG14823-RA 344..790 601..1047 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:04 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RA 1..343 17..359 100 == Plus
CG14823-RA 344..792 601..1049 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:02:02 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 55..1101 1..1047 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:21 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 55..1101 1..1047 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:52 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 55..1101 1..1047 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:42 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 55..1101 1..1047 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:04 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 55..1101 1..1047 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:53 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7066368..7066967 1..600 100 -> Plus
3L 7067555..7067779 601..825 100 -> Plus
3L 7068004..7068225 826..1047 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:53 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7066368..7066967 1..600 100 -> Plus
3L 7067555..7067779 601..825 100 -> Plus
3L 7068004..7068225 826..1047 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:53 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7066368..7066967 1..600 100 -> Plus
3L 7067555..7067779 601..825 100 -> Plus
3L 7068004..7068225 826..1047 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:52 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7059468..7060067 1..600 100 -> Plus
arm_3L 7060655..7060879 601..825 100 -> Plus
arm_3L 7061104..7061325 826..1047 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:11:09 Download gff for GH02020.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7059468..7060067 1..600 100 -> Plus
3L 7060655..7060879 601..825 100 -> Plus
3L 7061104..7061325 826..1047 100   Plus

GH02020.hyp Sequence

Translation from 1 to 405

> GH02020.hyp
RSQLAMEPTCSSSVAELAKYSEDDVETDESKVVEHQEYAEALSMSGESRK
RKRWTRRSCCTRQVLSTGAIFIALLLIIGAIYMHLRQKHHLGRLHINLKD
RGQVEVLEEDFPMVTAAGVGECATRTLVQSLRSS*

GH02020.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-PD 129 CG14823-PD 1..129 6..134 655 100 Plus
CG14823-PB 116 CG14823-PB 1..116 6..121 584 98.3 Plus
CG14823-PA 263 CG14823-PA 1..114 6..119 582 100 Plus

GH02020.pep Sequence

Translation from 16 to 405

> GH02020.pep
MEPTCSSSVAELAKYSEDDVETDESKVVEHQEYAEALSMSGESRKRKRWT
RRSCCTRQVLSTGAIFIALLLIIGAIYMHLRQKHHLGRLHINLKDRGQVE
VLEEDFPMVTAAGVGECATRTLVQSLRSS*

GH02020.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25005-PA 264 GF25005-PA 7..121 6..114 265 54.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14400-PA 264 GG14400-PA 1..105 1..106 456 84.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15386-PA 226 GH15386-PA 37..112 54..125 147 42.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-PD 129 CG14823-PD 1..129 1..129 655 100 Plus
CG14823-PB 116 CG14823-PB 1..116 1..116 584 98.3 Plus
CG14823-PA 263 CG14823-PA 1..114 1..114 582 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25021-PA 254 GL25021-PA 1..118 1..114 241 51.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13274-PA 254 GA13274-PA 1..128 1..126 234 47.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14814-PA 263 GM14814-PA 1..114 1..114 578 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13989-PA 263 GD13989-PA 1..114 1..114 590 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13134-PA 225 GJ13134-PA 30..98 49..115 162 52.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16648-PA 274 GK16648-PA 1..113 1..98 202 43.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21589-PA 262 GE21589-PA 1..105 1..106 432 90.6 Plus