Clone GH02203 Report

Search the DGRC for GH02203

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:22
Well:3
Vector:pOT2
Associated Gene/Transcriptwun-RA
Protein status:GH02203.pep: gold
Preliminary Size:1584
Sequenced Size:1610

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8804 2000-02-14 Blastp of sequenced clone
CG8804 2001-01-01 Release 2 assignment
CG8804 2003-01-01 Sim4 clustering to Release 3
wun 2008-04-29 Release 5.5 accounting
wun 2008-08-15 Release 5.9 accounting
wun 2008-12-18 5.12 accounting

Clone Sequence Records

GH02203.complete Sequence

1610 bp (1610 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145595

> GH02203.complete
CGTCGGCGAGCGAGACAACACCGCTGCGGCGGTCGGAAAACGAAACACCT
GACCATAAAGAACTGGCCCAAAGTAACAGCAACAGTCGACAAACAACAGT
TAATAGCAACAACAATAACTACAGTAACTCGGTGCAAGTGCGTCTGCAGG
AACAGGACAGAGATAGCGACAGCGAGCAACAACAACATACTGCCACCATC
ACCATGGATACCAACAAAAGAATCCTCTGCCGCGTGGGCTTGGATGTTTT
AATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTTTTCCTGCTGGGCG
AGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTCACTGAAGCACCCG
TTCCACGATTCTACGGTCCGGAATTGGATGCTATACTTCATCGGAGCTGT
GATACCAGTCGGCGTGATATTCATCGTGGAGGTCATCATTTCACAGAACA
AGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAGGTACGTCTTTATG
AACTACGAACTGCCCGACTGGATGATCGAGTGCTACAAGAAGATCGGCAT
CTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACGGATATAGCCAAGT
ACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGTGTGCCAGCCTCAA
ATGGCCGACGGCAGCACCTGCGACGATGCGATCAATGCGGGAAAATACAT
CCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCGCGCATGCTCAAAG
AGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTTCACCTTCTTCGCC
ATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGACCTGGCGGGGCTC
CAAGCTGCTGCGTCACCTTCTCCAGTTCCTGTTCATCATGGTGGCCTGGT
ACACAGCCCTAAGTCGCGTATCGGACTACAAGCACCACTGGTCCGATGTG
CTGGCAGGATCGCTTATTGGCTCCATAAGCGCACTGGTCGTGGCCAACTA
TGTCTCCGACTTGTTTCAAAAGCCCAACACGAAGCCCTATTTGGCGCGTA
CAGTGCAAGACATGAATGCATCGCCGGCCCAGGCCATAACGATTACTACA
AACTAACACGCAGAAGTGCAAAATAGCAATTACAAGTTGCACGAGCTGTA
GTTAAACTAAGGACTCGATGTTCTTACGGCTTTCTTCATGGGGACAGTGA
AGCCTAGCTTTGCGAGCCTTCCCAATTAATTTATTCCTGTACTGGCATTT
TAAGAGCTGAGCGTGAATGTATGTGTTAGCTGCAAGTGCACTCGAGTGCC
TTCTTTAATATTTAAACTAGAGCAATTGAGAGATCTGTGTATGACGATAG
CTATACTAAATATTTTTAACTGACGCAACAATTTCCACAAAACAAGTGAC
CTTTAAAACAGAGCTGCGCAAAAAATATATGAAAGCAATAAGTATTATGT
AAACTAGTTTTAAGCTTTGGATACGGAAAGATAATTAAAATATTTCTAAG
ATGGCCGTTAAATATGTTAATTTATAATTTTTGGCGAGAATTTACAATTG
TTCGCTGAATATTTTTATGAAAATAAAATAGAATTAAGAAAAAAAAAAAA
AAAAAAAAAA

GH02203.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
wun.a 1751 wun.a 158..1747 1..1590 7950 100 Plus
wun-RA 1594 wun-RA 1..1590 1..1590 7950 100 Plus
wun-RB 2131 wun-RB 468..2057 1..1590 7950 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5288041..5288637 1588..992 2985 100 Minus
chr2R 21145070 chr2R 5296701..5296964 264..1 1305 99.6 Minus
chr2R 21145070 chr2R 5291193..5291414 637..416 1095 99.5 Minus
chr2R 21145070 chr2R 5290144..5290324 815..635 905 100 Minus
chr2R 21145070 chr2R 5289896..5290074 993..815 895 100 Minus
chr2R 21145070 chr2R 5291795..5291947 416..264 765 100 Minus
chr3L 24539361 chr3L 22461741..22461956 756..971 210 73.1 Plus
chr2R 21145070 chr2R 5304930..5305035 856..961 200 79.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9400551..9401149 1590..992 2995 100 Minus
2R 25286936 2R 9409213..9409476 264..1 1320 100 Minus
2R 25286936 2R 9403705..9403926 637..416 1110 100 Minus
2R 25286936 2R 9402656..9402836 815..635 905 100 Minus
2R 25286936 2R 9402408..9402586 993..815 895 100 Minus
2R 25286936 2R 9404307..9404459 416..264 765 100 Minus
3L 28110227 3L 22472833..22473048 756..971 210 73.1 Plus
2R 25286936 2R 9417435..9417540 856..961 200 79.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9401750..9402348 1590..992 2995 100 Minus
2R 25260384 2R 9410412..9410675 264..1 1320 100 Minus
2R 25260384 2R 9404904..9405125 637..416 1110 100 Minus
2R 25260384 2R 9403855..9404035 815..635 905 100 Minus
2R 25260384 2R 9403607..9403785 993..815 895 100 Minus
2R 25260384 2R 9405506..9405658 416..264 765 100 Minus
2R 25260384 2R 9418634..9418739 856..961 200 79.2 Plus
Blast to na_te.dros performed 2019-03-16 09:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2371..2514 72..224 138 61.9 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5897..5941 1306..1350 116 78.3 Plus

GH02203.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:57:51 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5288041..5288636 993..1588 100 <- Minus
chr2R 5289897..5290073 816..992 100 <- Minus
chr2R 5290144..5290323 636..815 100 <- Minus
chr2R 5291195..5291413 417..635 99 <- Minus
chr2R 5291795..5291946 265..416 100 <- Minus
chr2R 5296701..5296964 1..264 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:06:47 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 35..1140 1..1106 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:34:42 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 35..1140 1..1106 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:53:24 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 35..1140 1..1106 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:09:22 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 35..1140 1..1106 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:50:07 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 35..1140 1..1106 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:37:18 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RA 1..1588 1..1588 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:34:42 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RA 1..1588 1..1588 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:24 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 417..2004 1..1588 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:09:22 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RA 1..1588 1..1588 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:50:07 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 417..2004 1..1588 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:57:51 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9409213..9409476 1..264 100   Minus
2R 9400553..9401148 993..1588 100 <- Minus
2R 9402409..9402585 816..992 100 <- Minus
2R 9402656..9402835 636..815 100 <- Minus
2R 9403707..9403925 417..635 100 <- Minus
2R 9404307..9404458 265..416 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:57:51 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9409213..9409476 1..264 100   Minus
2R 9400553..9401148 993..1588 100 <- Minus
2R 9402409..9402585 816..992 100 <- Minus
2R 9402656..9402835 636..815 100 <- Minus
2R 9403707..9403925 417..635 100 <- Minus
2R 9404307..9404458 265..416 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:57:51 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9409213..9409476 1..264 100   Minus
2R 9400553..9401148 993..1588 100 <- Minus
2R 9402409..9402585 816..992 100 <- Minus
2R 9402656..9402835 636..815 100 <- Minus
2R 9403707..9403925 417..635 100 <- Minus
2R 9404307..9404458 265..416 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:24 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5288058..5288653 993..1588 100 <- Minus
arm_2R 5289914..5290090 816..992 100 <- Minus
arm_2R 5290161..5290340 636..815 100 <- Minus
arm_2R 5291212..5291430 417..635 100 <- Minus
arm_2R 5291812..5291963 265..416 100 <- Minus
arm_2R 5296718..5296981 1..264 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:46:53 Download gff for GH02203.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9401752..9402347 993..1588 100 <- Minus
2R 9403608..9403784 816..992 100 <- Minus
2R 9403855..9404034 636..815 100 <- Minus
2R 9404906..9405124 417..635 100 <- Minus
2R 9405506..9405657 265..416 100 <- Minus
2R 9410412..9410675 1..264 100   Minus

GH02203.hyp Sequence

Translation from 2 to 1105

> GH02203.hyp
SASETTPLRRSENETPDHKELAQSNSNSRQTTVNSNNNNYSNSVQVRLQE
QDRDSDSEQQQHTATITMDTNKRILCRVGLDVLILLCAGFPILLFFLLGE
PYKRGFFCDDESLKHPFHDSTVRNWMLYFIGAVIPVGVIFIVEVIISQNK
AKQDNGNATSRRYVFMNYELPDWMIECYKKIGIYAFGAVLSQLTTDIAKY
SIGRLRPHFIAVCQPQMADGSTCDDAINAGKYIQEFTCKGVGSSARMLKE
MRLSFPSGHSSFTFFAMVYLALYLQARMTWRGSKLLRHLLQFLFIMVAWY
TALSRVSDYKHHWSDVLAGSLIGSISALVVANYVSDLFQKPNTKPYLART
VQDMNASPAQAITITTN*

GH02203.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
wun-PB 379 CG8804-PB 13..379 1..367 1912 100 Plus
wun-PC 364 CG8804-PC 13..343 1..331 1724 99.7 Plus
wun-PA 300 CG8804-PA 1..300 68..367 1573 100 Plus
wun2-PA 350 CG8805-PA 8..347 1..332 799 45.6 Plus
wun2-PB 246 CG8805-PB 1..243 92..332 716 54.3 Plus

GH02203.pep Sequence

Translation from 203 to 1105

> GH02203.pep
MDTNKRILCRVGLDVLILLCAGFPILLFFLLGEPYKRGFFCDDESLKHPF
HDSTVRNWMLYFIGAVIPVGVIFIVEVIISQNKAKQDNGNATSRRYVFMN
YELPDWMIECYKKIGIYAFGAVLSQLTTDIAKYSIGRLRPHFIAVCQPQM
ADGSTCDDAINAGKYIQEFTCKGVGSSARMLKEMRLSFPSGHSSFTFFAM
VYLALYLQARMTWRGSKLLRHLLQFLFIMVAWYTALSRVSDYKHHWSDVL
AGSLIGSISALVVANYVSDLFQKPNTKPYLARTVQDMNASPAQAITITTN
*

GH02203.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13080-PA 377 GF13080-PA 75..377 1..300 1460 88.1 Plus
Dana\GF11822-PA 347 GF11822-PA 80..344 1..265 765 53.2 Plus
Dana\GF10980-PA 345 GF10980-PA 62..297 33..274 628 47.9 Plus
Dana\GF10978-PA 335 GF10978-PA 7..275 8..291 573 42 Plus
Dana\GF23463-PA 331 GF23463-PA 4..226 35..273 456 39.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10557-PA 372 GG10557-PA 73..372 1..300 1533 93 Plus
Dere\GG23436-PA 351 GG23436-PA 86..348 5..265 728 51.7 Plus
Dere\GG16258-PA 340 GG16258-PA 30..292 3..271 606 43.9 Plus
Dere\GG16256-PA 341 GG16256-PA 7..298 8..300 561 39.2 Plus
Dere\GG16259-PA 305 GG16259-PA 35..254 32..263 469 41.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21309-PA 380 GH21309-PA 85..380 1..300 1271 75.7 Plus
Dgri\GH20575-PA 365 GH20575-PA 104..365 7..265 749 55.7 Plus
Dgri\GH16694-PA 345 GH16694-PA 35..301 4..277 666 45.6 Plus
Dgri\GH16692-PA 348 GH16692-PA 7..295 8..300 565 40 Plus
Dgri\GH14815-PA 385 GH14815-PA 4..226 35..272 467 40.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
wun-PA 300 CG8804-PA 1..300 1..300 1573 100 Plus
wun-PB 379 CG8804-PB 80..379 1..300 1573 100 Plus
wun-PC 364 CG8804-PC 80..343 1..264 1385 99.6 Plus
wun2-PA 350 CG8805-PA 85..347 5..265 755 52.9 Plus
wun2-PB 246 CG8805-PB 1..243 25..265 716 54.3 Plus
CG11426-PA 340 CG11426-PA 30..292 3..271 651 43.9 Plus
CG11438-PB 341 CG11438-PB 7..287 8..291 577 41.5 Plus
CG11438-PA 341 CG11438-PA 7..287 8..291 577 41.5 Plus
laza-PA 334 CG11440-PA 4..226 35..273 483 40.9 Plus
CG11425-PA 305 CG11425-PA 20..254 13..263 453 38.9 Plus
CG11437-PA 305 CG11437-PA 6..281 4..277 384 33.3 Plus
CG12746-PE 363 CG12746-PE 158..298 123..268 184 32.5 Plus
CG12746-PD 363 CG12746-PD 158..298 123..268 184 32.5 Plus
CG12746-PB 363 CG12746-PB 158..298 123..268 184 32.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19743-PA 298 GI19743-PA 1..298 1..300 1281 77.4 Plus
Dmoj\GI19768-PA 375 GI19768-PA 113..372 7..265 737 50.4 Plus
Dmoj\GI11383-PA 345 GI11383-PA 36..300 4..274 645 43.9 Plus
Dmoj\GI11380-PA 340 GI11380-PA 7..295 8..300 573 40.7 Plus
Dmoj\GI13921-PA 361 GI13921-PA 4..234 35..284 496 40.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16886-PA 306 GL16886-PA 1..306 1..300 1421 85 Plus
Dper\GL17588-PA 372 GL17588-PA 105..369 5..265 762 52.1 Plus
Dper\GL23165-PA 343 GL23165-PA 51..295 24..274 611 45 Plus
Dper\GL23143-PA 328 GL23143-PA 7..272 8..291 503 39.5 Plus
Dper\GL23176-PA 274 GL23176-PA 2..206 48..263 382 41 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21332-PA 386 GA21332-PA 81..386 1..300 1425 84.6 Plus
Dpse\GA21332-PC 306 GA21332-PC 1..306 1..300 1417 84.6 Plus
Dpse\GA21332-PB 365 GA21332-PB 81..344 1..264 1292 87.9 Plus
Dpse\GA24835-PA 369 GA24835-PA 102..366 5..265 763 52.1 Plus
Dpse\GA10999-PA 343 GA10999-PA 51..295 24..274 611 45 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20603-PA 372 GM20603-PA 73..372 1..300 1603 97.7 Plus
Dsec\GM21120-PA 350 GM21120-PA 85..347 5..265 730 53.2 Plus
Dsec\GM22448-PA 340 GM22448-PA 51..292 24..271 652 46.8 Plus
Dsec\GM22445-PA 341 GM22445-PA 9..287 6..291 568 40.2 Plus
Dsec\GM22093-PA 337 GM22093-PA 4..226 35..273 473 41.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10076-PA 372 GD10076-PA 73..372 1..300 1596 97.3 Plus
Dsim\GD10653-PA 350 GD10653-PA 85..347 5..265 738 53.6 Plus
Dsim\GD15031-PA 340 GD15031-PA 51..292 24..271 656 47.2 Plus
Dsim\GD15029-PA 341 GD15029-PA 7..287 8..291 564 39.6 Plus
Dsim\GD15032-PA 305 GD15032-PA 33..277 30..286 475 38.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18026-PA 378 GJ18026-PA 81..378 1..300 1287 77.1 Plus
Dvir\GJ18273-PA 332 GJ18273-PA 63..312 13..263 731 57 Plus
Dvir\GJ11638-PA 337 GJ11638-PA 27..291 4..274 673 43.9 Plus
Dvir\GJ11635-PA 345 GJ11635-PA 28..299 29..300 590 42.3 Plus
Dvir\GJ13711-PA 340 GJ13711-PA 4..235 35..281 494 39.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21745-PA 385 GK21745-PA 84..385 1..300 1360 81.2 Plus
Dwil\GK21557-PA 361 GK21557-PA 92..358 4..265 771 55.1 Plus
Dwil\GK16761-PA 362 GK16761-PA 48..310 4..272 669 45.7 Plus
Dwil\GK16759-PA 364 GK16759-PA 7..276 8..271 554 42.6 Plus
Dwil\GK17452-PA 349 GK17452-PA 4..225 35..272 505 40.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22302-PA 369 GE22302-PA 70..369 1..300 1565 95.7 Plus
Dyak\GE19275-PA 354 GE19275-PA 89..351 5..265 732 52.5 Plus
Dyak\GE23019-PA 340 GE23019-PA 30..293 3..272 610 43 Plus
Dyak\GE19506-PA 340 GE19506-PA 30..292 3..271 606 43.1 Plus
Dyak\GE23017-PA 341 GE23017-PA 7..287 8..291 562 40.3 Plus