Clone GH02210 Report

Search the DGRC for GH02210

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:22
Well:10
Vector:pOT2
Associated Gene/TranscriptCG12860-RA
Protein status:GH02210.pep: gold
Preliminary Size:1186
Sequenced Size:1199

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12860 2002-01-01 Sim4 clustering to Release 2
CG12860 2003-01-01 Sim4 clustering to Release 3
CG12860 2003-05-20 Blastp of sequenced clone
CG12860 2008-04-29 Release 5.5 accounting
CG12860 2008-08-15 Release 5.9 accounting
CG12860 2008-12-18 5.12 accounting

Clone Sequence Records

GH02210.complete Sequence

1199 bp (1199 high quality bases) assembled on 2003-05-20

GenBank Submission: BT011156

> GH02210.complete
AGCGTTCGCCTGTACAGACCAAAATTTCGTGTCTCTCAACCTGCCACAGC
ACCGGTTCCAATCCAAAACCTCCGTTTAGTTATGTTTCTGGCCAAAAGTT
CATCAATACTTCGCCCGCAGCTTCTTAATGAGGTGAAGGGACTAGTGAAG
TCACAATTTCTGGCTCTGTCACAGGTCGACCGACGCTTTGCCCACTCGGA
CGATAGGTGCGCCAATAAGAAATCCAGGAAGTGCGAGCAGAGCCCACCCA
AGGGTGTAGGTTTGCCCCCCCGGGATCGAAGACATTCTCATACGGATGGC
GTCAGTGATAAGTGCGCGAAGAACAAAAAAGATAAGCGGGAGTGCAAGAA
GTTTGAGTCCGAGAATGCCAAAAAGCCGGAATGCAAACCGCCCGTTGTCC
GTGCTCCAAAATACTACAAGCAGCTAAAACCGTGCAAGACCGACAAGGAG
CTCTCCGAGCTGCATCCCAAGTATCTGGGTGTATGGGGTCGTTGCGACAT
ACCCTACAAGCCAGAGCCCGATTGCACCGATCCCTGTGATTTGGCCGTAC
GTTTGGATGACAAGTACTACAAGCCCAGCAAATCGCTGGACCGCGAATTC
GACCAGTACTGGGTGGAGTGCTTCTTCCGGAAGCAGAAACGCTGCTGCCG
CAAGGTTGCTCCTGAGCGCACTTACCGCGTGTTAACCAAAAAGTGCGTTT
CCGCTCCGAAGAAGGCGCCTTGCTTCACCGTCAATCCCATGCCATGCAAA
CAAGAGGCCAAAACCAGCCCCTGTCCCAAGATCAAGCTATGCGAGTGTCC
GCCGGCAGCTGCCATTAACAATTGTAAACTGGTGCGAAGACACACAAGAT
GCCGGCGTCGCGCATGCCAGTATCCCAGCTTCTCGGAGTGCCAGCACGAG
GAGCTGAACACCAGCAGACCCATCGAGTGCCGCTGCCTGGAGGTGCCGCC
GCTTTGCCTTGTCTATCGACACGCTCTCCTCAACCGCCGACTTCCCTGTG
AGCCTCTGAAGCCGCGCAATGAATCGTGTTAAAGGAGGCACACTTTGGAT
TTGTGGACCCATTCATGGTGCTTCAACAATAGGCAGATAAAAATTAACAG
TGTAATAAAAGATACGAAATTTTTGGTTAAATAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH02210.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12860-RA 1177 CG12860-RA 46..1177 1..1132 5660 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10552947..10554078 1132..1 5645 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14665638..14666772 1135..1 5675 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14666837..14667971 1135..1 5675 100 Minus
Blast to na_te.dros performed 2019-03-15 19:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 2910..2962 736..789 114 70.4 Plus

GH02210.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:47:07 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10552947..10554078 1..1132 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:06:49 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12860-RA 1..951 82..1032 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:36:36 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12860-RA 1..951 82..1032 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:57:23 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12860-RA 1..951 82..1032 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:12:43 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12860-RA 1..951 82..1032 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:34 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12860-RA 1..951 82..1032 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:40:10 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12860-RA 46..1177 1..1132 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:36:36 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12860-RA 46..1177 1..1132 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:57:23 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12860-RA 46..1177 1..1132 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:12:43 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12860-RA 46..1177 1..1132 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:34 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12860-RA 46..1177 1..1132 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:07 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14665641..14666772 1..1132 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:07 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14665641..14666772 1..1132 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:07 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14665641..14666772 1..1132 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:57:23 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10553146..10554277 1..1132 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:49:04 Download gff for GH02210.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14666840..14667971 1..1132 100   Minus

GH02210.hyp Sequence

Translation from 1 to 1031

> GH02210.hyp
SVRLYRPKFRVSQPATAPVPIQNLRLVMFLAKSSSILRPQLLNEVKGLVK
SQFLALSQVDRRFAHSDDRCANKKSRKCEQSPPKGVGLPPRDRRHSHTDG
VSDKCAKNKKDKRECKKFESENAKKPECKPPVVRAPKYYKQLKPCKTDKE
LSELHPKYLGVWGRCDIPYKPEPDCTDPCDLAVRLDDKYYKPSKSLDREF
DQYWVECFFRKQKRCCRKVAPERTYRVLTKKCVSAPKKAPCFTVNPMPCK
QEAKTSPCPKIKLCECPPAAAINNCKLVRRHTRCRRRACQYPSFSECQHE
ELNTSRPIECRCLEVPPLCLVYRHALLNRRLPCEPLKPRNESC*

GH02210.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12860-PA 316 CG12860-PA 1..316 28..343 1761 100 Plus
CG2127-PB 289 CG2127-PB 43..276 93..331 274 31 Plus
CG2127-PA 305 CG2127-PA 59..292 93..331 274 31 Plus
CG8701-PA 246 CG8701-PA 77..239 170..338 216 32.6 Plus
boly-PA 255 CG30362-PA 77..249 145..324 205 31.1 Plus

GH02210.pep Sequence

Translation from 81 to 1031

> GH02210.pep
MFLAKSSSILRPQLLNEVKGLVKSQFLALSQVDRRFAHSDDRCANKKSRK
CEQSPPKGVGLPPRDRRHSHTDGVSDKCAKNKKDKRECKKFESENAKKPE
CKPPVVRAPKYYKQLKPCKTDKELSELHPKYLGVWGRCDIPYKPEPDCTD
PCDLAVRLDDKYYKPSKSLDREFDQYWVECFFRKQKRCCRKVAPERTYRV
LTKKCVSAPKKAPCFTVNPMPCKQEAKTSPCPKIKLCECPPAAAINNCKL
VRRHTRCRRRACQYPSFSECQHEELNTSRPIECRCLEVPPLCLVYRHALL
NRRLPCEPLKPRNESC*

GH02210.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13521-PA 277 GF13521-PA 1..272 1..316 611 46.7 Plus
Dana\GF12592-PA 303 GF12592-PA 128..290 142..304 211 38.6 Plus
Dana\GF14894-PA 253 GF14894-PA 92..243 147..296 148 31 Plus
Dana\GF19807-PA 244 GF19807-PA 86..243 149..302 147 32.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22408-PA 313 GG22408-PA 1..313 1..316 1337 84.8 Plus
Dere\GG10647-PA 303 GG10647-PA 119..290 126..304 199 34.6 Plus
Dere\GG10650-PA 256 GG10650-PA 98..255 149..302 164 31.4 Plus
Dere\GG23352-PA 244 GG23352-PA 82..237 148..311 162 36 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23833-PA 182 GH23833-PA 46..158 108..223 191 40.3 Plus
Dgri\GH22918-PA 182 GH22918-PA 46..158 108..223 189 41.2 Plus
Dgri\GH20818-PA 177 GH20818-PA 15..171 150..297 143 29.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12860-PA 316 CG12860-PA 1..316 1..316 1761 100 Plus
CG2127-PB 289 CG2127-PB 43..276 66..304 274 31 Plus
CG2127-PA 305 CG2127-PA 59..292 66..304 274 31 Plus
CG8701-PA 246 CG8701-PA 77..239 143..311 216 32.6 Plus
boly-PA 255 CG30362-PA 77..249 118..297 205 31.1 Plus
CG4691-PA 262 CG4691-PA 104..256 150..297 184 33.3 Plus
CG12861-PA 239 CG12861-PA 62..233 137..297 159 31.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20915-PA 272 GI20915-PA 109..266 149..297 192 34.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10633-PA 341 GL10633-PA 214..294 97..179 184 42.2 Plus
Dper\GL10869-PA 261 GL10869-PA 110..258 159..297 177 34 Plus
Dper\GL11217-PA 243 GL11217-PA 91..231 157..303 149 31.6 Plus
Dper\GL10634-PA 72 GL10634-PA 1..67 236..303 139 45.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11863-PA 267 GA11863-PA 56..262 96..303 335 39.3 Plus
Dpse\GA15789-PA 261 GA15789-PA 110..258 159..297 177 35.3 Plus
Dpse\GA21267-PA 243 GA21267-PA 91..231 157..303 149 31.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20194-PA 315 GM20194-PA 1..315 1..316 1409 88.9 Plus
Dsec\GM20692-PA 305 GM20692-PA 119..292 126..304 221 35.7 Plus
Dsec\GM20695-PA 252 GM20695-PA 108..246 159..297 157 33.8 Plus
Dsec\GM21027-PA 246 GM21027-PA 82..239 148..311 156 35.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25665-PA 315 GD25665-PA 1..315 1..316 1401 88.3 Plus
Dsim\GD15275-PA 305 GD15275-PA 119..292 126..304 218 35.7 Plus
Dsim\GD15278-PA 252 GD15278-PA 108..251 159..302 164 32.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21489-PA 220 GJ21489-PA 17..212 101..296 242 39 Plus
Dvir\GJ20644-PA 206 GJ20644-PA 45..200 150..297 172 31.4 Plus
Dvir\GJ20645-PA 276 GJ20645-PA 115..270 150..297 167 36.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19520-PA 203 GK19520-PA 3..203 109..306 307 39 Plus
Dwil\GK15825-PA 289 GK15825-PA 122..276 149..304 241 40.9 Plus
Dwil\GK15752-PA 216 GK15752-PA 55..203 148..299 152 32.5 Plus
Dwil\GK15755-PA 265 GK15755-PA 105..259 152..297 149 35.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12297-PA 314 GE12297-PA 1..312 1..313 1331 84 Plus
Dyak\GE23064-PA 307 GE23064-PA 121..294 126..304 213 34.6 Plus
Dyak\GE19192-PA 245 GE19192-PA 82..239 148..311 165 34.9 Plus
Dyak\GE23091-PA 256 GE23091-PA 78..250 118..297 156 29.2 Plus