Clone GH02216 Report

Search the DGRC for GH02216

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:22
Well:16
Vector:pOT2
Associated Gene/Transcriptvir-1-RC
Protein status:GH02216.pep: gold
Preliminary Size:1351
Sequenced Size:1217

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31764 2002-03-19 Blastp of sequenced clone
vir-1 2008-04-29 Release 5.5 accounting
vir-1 2008-08-15 Release 5.9 accounting
Obp49a 2008-08-15 Release 5.9 accounting
vir-1 2008-12-18 5.12 accounting
Obp49a 2008-12-18 5.12 accounting

Clone Sequence Records

GH02216.complete Sequence

1217 bp (1217 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094667

> GH02216.complete
AAAATGCTTTCAAAATCGCAGCTATTACTGCTCGTTGTCGGGTTCTGCCT
GAATGCAGCCGTCTCGGCTGACGTGGACTGCAGCAAGCGGCCATCGTTTG
TCAATCCCAAAACCTGTTGTCCAATGCCGGACTTCGTGACCGCCGAGTTG
AAGCAAAAGTGCATCAACTCGGCTTTCCGCACAGAACAAAACTGAACAGA
ATCGAATCCGGTTGCCGGTCCACATCAACGCATCAAAGCTTTCAGCCCTA
AATAAACTATACAAATTAAACAAATTATAAGCTTGTGAAAAAAAAAAAAC
CAAACAAAAATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGCTAGCCCT
TAGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGACGATGCGG
AAGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTTCCATAAC
TTCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTCAGCCGAA
TCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGATCTCTTCC
GCCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTCCGGTGAG
GAGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATGGCAGCGG
AGCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGACTCGAAGA
ACGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAAGGTTGAG
ATCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGGTCCGCTT
GGTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAGGGAGTGC
ACACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCACCTCCGCC
CCGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATGATCGCCG
CGAGCCGCTGGAGAAGCAGCCACAGGATAACGAGGTGCGCGACATTGATG
AGCCCAAGGTATAAACTTATTTACGACAAAGAAAAAACATATATCCTTTG
AAAGACATTTAACCTGGAAATGCTTGGCAAGCGCTCTACTAACCAATAAA
AAAAAAAAAACGAATTGTATATTGAGATCTTTCTATAACTTGTAATATAC
CTATATACATATTTCTATTCTTTTTTTAAATAAAGTTTTCCATAAAACTA
AAAAAAAAAAAAAAAAA

GH02216.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-RC 1153 vir-1-RC 122..1150 173..1201 5145 100 Plus
vir-1.d 1626 vir-1.d 529..1545 185..1201 5085 100 Plus
vir-1.b 1218 vir-1.b 121..1137 185..1201 5085 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12405595..12406069 1199..725 2375 100 Minus
chr2L 23010047 chr2L 12406149..12406336 728..541 940 100 Minus
chr2L 23010047 chr2L 12420246..12420449 373..173 940 98.5 Minus
chr2L 23010047 chr2L 12408061..12408231 541..371 855 100 Minus
chr2R 21145070 chr2R 8577964..8578080 167..51 585 100 Minus
chr2R 21145070 chr2R 8578136..8578186 51..1 255 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12406992..12407468 1201..725 2385 100 Minus
2L 23513712 2L 12421641..12421841 373..173 1005 100 Minus
2L 23513712 2L 12407548..12407735 728..541 940 100 Minus
2L 23513712 2L 12409456..12409626 541..371 855 100 Minus
2R 25286936 2R 12690701..12690817 167..51 585 100 Minus
2R 25286936 2R 12690873..12690923 51..1 255 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12406992..12407468 1201..725 2385 100 Minus
2L 23513712 2L 12421641..12421841 373..173 1005 100 Minus
2L 23513712 2L 12407548..12407735 728..541 940 100 Minus
2L 23513712 2L 12409456..12409626 541..371 855 100 Minus
2R 25260384 2R 12691900..12692016 167..51 585 100 Minus
2R 25260384 2R 12692072..12692122 51..1 255 100 Minus
Blast to na_te.dros performed 2019-03-16 15:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 1..55 249..303 113 67.3 Plus

GH02216.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:57:36 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12405595..12406067 727..1199 100 <- Minus
chr2L 12406151..12406335 542..726 100 <- Minus
chr2L 12408061..12408228 374..541 100 <- Minus
chr2L 12420246..12420449 173..373 98 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:09:10 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 1..705 310..1014 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:32:03 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 1..705 310..1014 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:57:52 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 1..705 310..1014 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:05:03 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 1..705 310..1014 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:57:02 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 1..705 310..1014 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:09:09 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 1..1027 173..1199 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:32:03 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 1..1027 173..1199 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:57:52 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 22..1048 173..1199 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:05:03 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 1..1027 173..1199 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:57:02 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 22..1048 173..1199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:36 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12406994..12407466 727..1199 100 <- Minus
2L 12407550..12407734 542..726 100 <- Minus
2L 12409456..12409623 374..541 100 <- Minus
2L 12421641..12421841 173..373 100 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:36 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12406994..12407466 727..1199 100 <- Minus
2L 12407550..12407734 542..726 100 <- Minus
2L 12409456..12409623 374..541 100 <- Minus
2L 12421641..12421841 173..373 100 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:36 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12406994..12407466 727..1199 100 <- Minus
2L 12407550..12407734 542..726 100 <- Minus
2L 12409456..12409623 374..541 100 <- Minus
2L 12421641..12421841 173..373 100 == Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:57:52 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12421641..12421841 173..373 100 == Minus
arm_2L 12406994..12407466 727..1199 100 <- Minus
arm_2L 12407550..12407734 542..726 100 <- Minus
arm_2L 12409456..12409623 374..541 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:51 Download gff for GH02216.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12406994..12407466 727..1199 100 <- Minus
2L 12407550..12407734 542..726 100 <- Minus
2L 12409456..12409623 374..541 100 <- Minus
2L 12421641..12421841 173..373 100 == Minus

GH02216.pep Sequence

Translation from 309 to 1013

> GH02216.pep
MKLLFGLLMTVLALSGVFTLPARNDPQDDAEVIKVPSRPQPESDFHNFRG
VIDTGSGYPFLQPNPSSFNVGIFDSFDDLFRRLRTRLWPVIGRDSGEEGA
SPTGDSDDSSDGSGAGFPFGVRPLIPLDSKNANTTSTIKVVNGHKVEINE
TVYGDSNSVFKVRLVNVRPLESGEEVAQGVHTSGGDFQPALEPSTSAPPK
KFEEFDEEDDDDRREPLEKQPQDNEVRDIDEPKV*

GH02216.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15675-PA 239 GF15675-PA 1..239 1..234 852 71.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10265-PA 227 GG10265-PA 1..226 1..230 883 83.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10136-PA 228 GH10136-PA 1..228 1..234 684 63.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-PH 234 CG31764-PH 1..234 1..234 1226 100 Plus
vir-1-PC 234 CG31764-PC 1..234 1..234 1226 100 Plus
vir-1-PB 431 CG31764-PB 1..233 1..233 1222 100 Plus
vir-1-PA 431 CG31764-PA 1..233 1..233 1222 100 Plus
vir-1-PG 423 CG31764-PG 1..225 1..225 1180 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22225-PA 411 GI22225-PA 1..229 1..233 745 64 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19505-PA 463 GL19505-PA 16..243 16..233 717 72.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16459-PA 463 GA16459-PA 16..243 16..233 756 72.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26251-PA 431 GM26251-PA 1..233 1..233 1202 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22123-PA 440 GD22123-PA 1..233 1..233 1204 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20102-PA 231 GJ20102-PA 16..231 17..234 652 63.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14629-PA 419 GK14629-PA 1..237 1..233 671 66.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12315-PA 430 GE12315-PA 1..233 1..233 951 91 Plus

GH02216.hyp Sequence

Translation from 309 to 1013

> GH02216.hyp
MKLLFGLLMTVLALSGVFTLPARNDPQDDAEVIKVPSRPQPESDFHNFRG
VIDTGSGYPFLQPNPSSFNVGIFDSFDDLFRRLRTRLWPVIGRDSGEEGA
SPTGDSDDSSDGSGAGFPFGVRPLIPLDSKNANTTSTIKVVNGHKVEINE
TVYGDSNSVFKVRLVNVRPLESGEEVAQGVHTSGGDFQPALEPSTSAPPK
KFEEFDEEDDDDRREPLEKQPQDNEVRDIDEPKV*

GH02216.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-PH 234 CG31764-PH 1..234 1..234 1226 100 Plus
vir-1-PC 234 CG31764-PC 1..234 1..234 1226 100 Plus
vir-1-PB 431 CG31764-PB 1..233 1..233 1222 100 Plus
vir-1-PA 431 CG31764-PA 1..233 1..233 1222 100 Plus
vir-1-PG 423 CG31764-PG 1..225 1..225 1180 100 Plus