Clone GH02288 Report

Search the DGRC for GH02288

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:22
Well:88
Vector:pOT2
Associated Gene/TranscriptExt2-RB
Protein status:GH02288.pep: gold
Preliminary Size:2698
Sequenced Size:2709

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33038 2000-02-14 Blastp of sequenced clone
CG8433 2001-01-01 Release 2 assignment
CG33038 2003-01-01 Sim4 clustering to Release 3
Ext2 2008-04-29 Release 5.5 accounting
CG10731 2008-08-15 Release 5.9 accounting
Ext2 2008-08-15 Release 5.9 accounting
Ext2 2008-12-18 5.12 accounting
CG10731 2008-12-18 5.12 accounting

Clone Sequence Records

GH02288.complete Sequence

2709 bp (2709 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145598

> GH02288.complete
ATACGGTCATGTTATCTTGGGAATAAGAGAAAAGGACAATATGTGAAAAT
ATCAATAAAATGACAAAAATAAAGAATCTGCTGAGTTTTGTGACCCAGTC
ACGGGCCATATCGCACACCAATCCCAGGGAACATATACTTAACTGCCTGA
CCTATGGGCTACTAGTCATTGTGGCGCTCTGCGCGGGTTTTCTGCTTTGG
GATCTCTCCAGCAGCCCACGGGATGGATTCTTCCATGGGAAAAGGGACTC
GCACACATTAATCCTCGACCTGGAGCACATCCAGGAGCTTGCCGTAAATC
CGGAGGCCGAACAGCGGGCACGGAATGTAAACTGCACCTTCTGGGACTGC
CTGAACATCTACAAATGCGAGCACGACCGCCTAAAGGTCTACATCTATCC
GCTGCAGGAGTTTGTTGACGAGCAGAGCGACAAAACGGCCACCACCCTGT
CCAGCGAGTACTTCCAAATATTGGAGGCGGTACTAAAGAGTCGCTACTAC
ACGTCCAATCCGAACGAAGCGTGCCTCTTTCTGCCCAGTTTGGATCTCCT
GAACCAAAATGTCTTCGACAAGCACTTGGCGGGCGCTGCCTTGGCTTCAC
TGGACTTCTGGGATCGTGGTGCCAACCACATCATCTTTAATATGCTGCCC
GGCGGAGCTCCATCCTATAACACTGTGCTGGATGTGAATACGGATAATGC
CATCATTTTTGGCGGTGGCTTTGACTCTTGGTCTTATCGCCCGGGCTTTG
ATGTCGCCATTCCAGTCTGGAGTCCACGATTGGTGCGACAACATGCACAT
GCGACGGCCCAGAGGAAGTTCCTATTGGTAGTAGCCCAGCTGAACATTCT
TCCGCGCTTTGTGAGGACTCTGAGGGAGTTATCTCTGGCTCACAGCGAGC
AATTGCTTCTTTTGGGAGCCTGCGAGAACTTGGATCTCACAATGCGCTGC
CCTTTGTCGCAGCACCACAAATCGCTGGAGTATCCTCGGCTGCTGTCTCG
CGGTAAATTTTGCCTGCTAGGTCGTAGTCTTCGCATGGGTCAACCCGATC
TAGTAGAGATTATGTCTCAGCACTGTATTCCCGTAATTGCCGTGGACAAC
TATGTGCTACCCTTCGAAGATGTGATTGATTGGTCATTGGCCTCCGTTCG
TATACGCGAAAACGAACTGCATTCCGTAATGCAGAAGCTAAAAGCAATAT
CGAGTGTTAAGATAGTTGAAATGCAGAAGCAAGTGCAGTGGTTGTTCTCC
AAGTACTTCAAAGATCTGAAGACTGTGACACTAACTGCTCTTGAGGTGCT
GGAGAGTAGGATCTTTCCGCTGCGAGCCCGTAGCAGTCGTCAGTGGAATA
CCATTGATACCAACGCCCGTTCCACATTCAATCCCCTTTTCCTGCCGTCG
CTGGCACCAAAGTCACAGGGCTTCACCGCCGTCATCCTCACCTACGATCG
CGTGGAGAGTCTGTTCCTGCTGATTCAGAAGCTCGCTGTAGTGCCATCAT
TGCAAAGCATTTTAGTGATTTGGAATAATCAGAAAAAATCTCCACCGCAC
TTATCCACCTTTCCATCTATATCGAAACCGCTGAAAATTCGGCAAACCAA
GGAGAACAAGCTATCCAATCGATTCTATCCATATCCAGAAATAGAAACGG
AAGCTATCTTAACCATAGACGATGACATCATAATGCTGACCACTGATGAG
TTGGATTTTGGCTATGAAGTTTGGCGAGAGTTTCCTGATCACATTGTTGG
CTTTCCCAGTCGAATTCATGTTTGGGAAAATGTTACGATGCGCTGGCACT
ACGAATCGGAGTGGACGAACCAAATATCAATGGTTCTTACCGGCGCTGCT
TTCCATCACAAGTACTGGAGTCACATGTACACACATGCCATGCCGGGTGA
TATCAAGGATTGGGTGGATGAGCACATGAATTGCGAGGACATTGCCATGA
ATTTTCTGGTGGCCAACATCACCAACAATCCGCCCATTAAGGTTACTCCT
CGAAAGAAGTTTAAGTGCCCGGAGTGCACCAATACGGAAATGCTCTCCGC
TGATCTGAATCACATGCGTGAACGTTCGGCTTGCATTGATCGCTTCTCCA
AAATCTACGGCCGCATGCCACTTCGCACGGTGGAGTTCAGAGCGGACCCT
GTGTTATTCCGGGACAATTTCCCGGACAAGTTGAAGCGTTACAATGATAT
TGGTAGCTTATAAGGGTCCTTAGCTTTGAGGCCAACATTCCAGAGGAACC
TATGCAGATATACCAAAGACTTCTGAGAATACCGCTCAACTCTAATGGAA
ATCTAATGTTCGTTTATATCATAGCAATACCTTCTTAACGGATAAAGAGG
CCAACTTATCTGGATCTCGCTTAGAAAATCAATTTCGTCATTGGGATGTG
ATAGAGATGACTATTGTAGGCAGGTCCGGTTGTATTCTTTTGACTTCTCA
TTGGTACTCAAAAATCCAATTATTCCGTTTGGATTCTCACGTATTTGTCA
AAATAGTTTAAATATGCTTTAGAACAATTAATTGAATTAACGTCCGTTCT
TTGGACTTATTATAAGTTATTATTATTGTAGTTGTAGGTCGTAATATTGG
CAGCTTTTATCTAGACTTTATTTTGATTTTAAATCAATAATTTAAAAAAC
TGAAACTGGCCTGTAAATAAGAATTAAAATAATCATATCATAAAAAAAAA
AAAAAAAAA

GH02288.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ext2-RA 3464 Ext2-RA 776..3464 1..2689 13445 100 Plus
CG10731-RA 3464 CG10731-RA 776..3464 1..2689 13445 100 Plus
Ext2-RB 2689 Ext2-RB 1..2689 1..2689 13445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12034485..12036035 1551..1 7680 99.7 Minus
chr2R 21145070 chr2R 12033223..12034203 2691..1711 4845 99.6 Minus
chr2R 21145070 chr2R 12034261..12034420 1711..1552 755 98.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16147166..16148716 1551..1 7755 100 Minus
2R 25286936 2R 16145897..16146884 2698..1711 4925 99.9 Minus
2R 25286936 2R 16146942..16147101 1711..1552 800 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16148365..16149915 1551..1 7755 100 Minus
2R 25260384 2R 16147096..16148083 2698..1711 4925 99.8 Minus
2R 25260384 2R 16148141..16148300 1711..1552 800 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:30:18 has no hits.

GH02288.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:31:14 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12034261..12034420 1552..1711 98 <- Minus
chr2R 12033223..12034202 1712..2691 99 <- Minus
chr2R 12034485..12036035 1..1551 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:07:07 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
Ext2-RB 1..2154 60..2213 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:04 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
Ext2-RB 1..2154 60..2213 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:43:55 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
Ext2-RA 1..2154 60..2213 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:38 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
Ext2-RB 1..2154 60..2213 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:01:04 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
Ext2-RB 1..2154 60..2213 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:17:11 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10731-RA 776..3464 1..2689 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:03 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10731-RA 776..3464 1..2689 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:43:55 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
Ext2-RA 799..3489 1..2691 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:38 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10731-RA 776..3464 1..2689 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:01:04 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
Ext2-RB 4..2694 1..2691 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:31:14 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16145904..16146883 1712..2691 100 <- Minus
2R 16146942..16147101 1552..1711 100 <- Minus
2R 16147166..16148716 1..1551 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:31:14 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16145904..16146883 1712..2691 100 <- Minus
2R 16146942..16147101 1552..1711 100 <- Minus
2R 16147166..16148716 1..1551 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:31:14 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16145904..16146883 1712..2691 100 <- Minus
2R 16146942..16147101 1552..1711 100 <- Minus
2R 16147166..16148716 1..1551 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:43:55 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12033409..12034388 1712..2691 100 <- Minus
arm_2R 12034447..12034606 1552..1711 100 <- Minus
arm_2R 12034671..12036221 1..1551 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:24 Download gff for GH02288.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16147103..16148082 1712..2691 100 <- Minus
2R 16148141..16148300 1552..1711 100 <- Minus
2R 16148365..16149915 1..1551 100   Minus

GH02288.pep Sequence

Translation from 59 to 2212

> GH02288.pep
MTKIKNLLSFVTQSRAISHTNPREHILNCLTYGLLVIVALCAGFLLWDLS
SSPRDGFFHGKRDSHTLILDLEHIQELAVNPEAEQRARNVNCTFWDCLNI
YKCEHDRLKVYIYPLQEFVDEQSDKTATTLSSEYFQILEAVLKSRYYTSN
PNEACLFLPSLDLLNQNVFDKHLAGAALASLDFWDRGANHIIFNMLPGGA
PSYNTVLDVNTDNAIIFGGGFDSWSYRPGFDVAIPVWSPRLVRQHAHATA
QRKFLLVVAQLNILPRFVRTLRELSLAHSEQLLLLGACENLDLTMRCPLS
QHHKSLEYPRLLSRGKFCLLGRSLRMGQPDLVEIMSQHCIPVIAVDNYVL
PFEDVIDWSLASVRIRENELHSVMQKLKAISSVKIVEMQKQVQWLFSKYF
KDLKTVTLTALEVLESRIFPLRARSSRQWNTIDTNARSTFNPLFLPSLAP
KSQGFTAVILTYDRVESLFLLIQKLAVVPSLQSILVIWNNQKKSPPHLST
FPSISKPLKIRQTKENKLSNRFYPYPEIETEAILTIDDDIIMLTTDELDF
GYEVWREFPDHIVGFPSRIHVWENVTMRWHYESEWTNQISMVLTGAAFHH
KYWSHMYTHAMPGDIKDWVDEHMNCEDIAMNFLVANITNNPPIKVTPRKK
FKCPECTNTEMLSADLNHMRERSACIDRFSKIYGRMPLRTVEFRADPVLF
RDNFPDKLKRYNDIGSL*

GH02288.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13049-PA 717 GF13049-PA 1..717 1..717 3606 91.2 Plus
Dana\GF13249-PA 765 GF13249-PA 56..760 58..714 884 31.8 Plus
Dana\GF11490-PA 971 GF11490-PA 709..971 450..714 588 46.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22301-PA 717 GG22301-PA 1..717 1..717 3807 98.5 Plus
Dere\GG20465-PA 760 GG20465-PA 56..755 58..714 895 32.3 Plus
Dere\GG21945-PA 972 GG21945-PA 710..972 450..714 583 46.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20211-PA 648 GH20211-PA 3..648 75..717 2904 80.8 Plus
Dgri\GH20787-PA 754 GH20787-PA 58..749 68..714 859 32 Plus
Dgri\GH23150-PA 983 GH23150-PA 722..983 450..714 617 46.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
sotv-PB 717 CG8433-PB 1..717 1..717 3793 100 Plus
ttv-PB 760 CG10117-PB 56..755 58..714 883 32.6 Plus
ttv-PA 760 CG10117-PA 56..755 58..714 883 32.6 Plus
botv-PA 972 CG15110-PA 710..972 450..714 617 46.6 Plus
ttv-PC 299 CG10117-PC 33..294 467..714 499 38.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20737-PA 720 GI20737-PA 1..720 1..717 3091 79.6 Plus
Dmoj\GI20872-PA 761 GI20872-PA 89..756 92..714 856 32.1 Plus
Dmoj\GI18912-PA 974 GI18912-PA 713..974 450..714 616 46.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11396-PA 717 GL11396-PA 1..717 1..717 3501 89 Plus
Dper\GL11868-PA 651 GL11868-PA 390..651 450..714 614 46.8 Plus
Dper\GL11446-PA 676 GL11446-PA 228..656 227..608 509 31.4 Plus
Dper\GL16355-PA 247 GL16355-PA 62..242 85..257 218 31.4 Plus
Dper\GL11871-PA 101 GL11871-PA 11..101 588..714 153 31.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17244-PA 717 GA17244-PA 1..717 1..717 3501 89.1 Plus
Dpse\GA10084-PA 765 GA10084-PA 79..760 78..714 887 32.4 Plus
Dpse\GA13499-PA 967 GA13499-PA 706..967 450..714 618 46.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20090-PA 717 GM20090-PA 1..717 1..717 3841 99 Plus
Dsec\GM21554-PA 760 GM21554-PA 61..755 70..714 898 32.5 Plus
Dsec\GM21933-PA 972 GM21933-PA 710..972 450..714 578 46.3 Plus
Dsec\GM19618-PA 73 GM19618-PA 1..73 645..717 406 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25567-PA 717 GD25567-PA 1..717 1..717 3856 99.7 Plus
Dsim\GD11060-PA 760 GD11060-PA 56..755 58..714 900 32.5 Plus
Dsim\GD11429-PA 608 GD11429-PA 457..603 564..709 371 51 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20474-PA 719 GJ20474-PA 1..719 1..717 3104 79.1 Plus
Dvir\GJ20607-PA 757 GJ20607-PA 85..752 92..714 863 32.4 Plus
Dvir\GJ19767-PA 977 GJ19767-PA 716..977 450..714 612 46.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15814-PA 728 GK15814-PA 1..728 1..717 3188 80.6 Plus
Dwil\GK15839-PA 776 GK15839-PA 83..771 81..714 880 32.5 Plus
Dwil\GK17964-PA 938 GK17964-PA 677..933 450..710 610 45 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14097-PA 717 GE14097-PA 1..717 1..717 3821 98.5 Plus
Dyak\GE13596-PA 760 GE13596-PA 56..755 58..714 901 32.4 Plus
Dyak\GE12019-PA 972 GE12019-PA 710..972 450..714 587 46.6 Plus

GH02288.hyp Sequence

Translation from 59 to 2212

> GH02288.hyp
MTKIKNLLSFVTQSRAISHTNPREHILNCLTYGLLVIVALCAGFLLWDLS
SSPRDGFFHGKRDSHTLILDLEHIQELAVNPEAEQRARNVNCTFWDCLNI
YKCEHDRLKVYIYPLQEFVDEQSDKTATTLSSEYFQILEAVLKSRYYTSN
PNEACLFLPSLDLLNQNVFDKHLAGAALASLDFWDRGANHIIFNMLPGGA
PSYNTVLDVNTDNAIIFGGGFDSWSYRPGFDVAIPVWSPRLVRQHAHATA
QRKFLLVVAQLNILPRFVRTLRELSLAHSEQLLLLGACENLDLTMRCPLS
QHHKSLEYPRLLSRGKFCLLGRSLRMGQPDLVEIMSQHCIPVIAVDNYVL
PFEDVIDWSLASVRIRENELHSVMQKLKAISSVKIVEMQKQVQWLFSKYF
KDLKTVTLTALEVLESRIFPLRARSSRQWNTIDTNARSTFNPLFLPSLAP
KSQGFTAVILTYDRVESLFLLIQKLAVVPSLQSILVIWNNQKKSPPHLST
FPSISKPLKIRQTKENKLSNRFYPYPEIETEAILTIDDDIIMLTTDELDF
GYEVWREFPDHIVGFPSRIHVWENVTMRWHYESEWTNQISMVLTGAAFHH
KYWSHMYTHAMPGDIKDWVDEHMNCEDIAMNFLVANITNNPPIKVTPRKK
FKCPECTNTEMLSADLNHMRERSACIDRFSKIYGRMPLRTVEFRADPVLF
RDNFPDKLKRYNDIGSL*

GH02288.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Ext2-PB 717 CG8433-PB 1..717 1..717 3793 100 Plus
ttv-PB 760 CG10117-PB 56..755 58..714 883 32.6 Plus
ttv-PA 760 CG10117-PA 56..755 58..714 883 32.6 Plus
botv-PA 972 CG15110-PA 710..972 450..714 617 46.6 Plus
ttv-PC 299 CG10117-PC 33..294 467..714 499 38.9 Plus