BDGP Sequence Production Resources |
Search the DGRC for GH02288
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 22 |
Well: | 88 |
Vector: | pOT2 |
Associated Gene/Transcript | Ext2-RB |
Protein status: | GH02288.pep: gold |
Preliminary Size: | 2698 |
Sequenced Size: | 2709 |
Gene | Date | Evidence |
---|---|---|
CG33038 | 2000-02-14 | Blastp of sequenced clone |
CG8433 | 2001-01-01 | Release 2 assignment |
CG33038 | 2003-01-01 | Sim4 clustering to Release 3 |
Ext2 | 2008-04-29 | Release 5.5 accounting |
CG10731 | 2008-08-15 | Release 5.9 accounting |
Ext2 | 2008-08-15 | Release 5.9 accounting |
Ext2 | 2008-12-18 | 5.12 accounting |
CG10731 | 2008-12-18 | 5.12 accounting |
2709 bp (2709 high quality bases) assembled on 2000-02-14
GenBank Submission: AF145598
> GH02288.complete ATACGGTCATGTTATCTTGGGAATAAGAGAAAAGGACAATATGTGAAAAT ATCAATAAAATGACAAAAATAAAGAATCTGCTGAGTTTTGTGACCCAGTC ACGGGCCATATCGCACACCAATCCCAGGGAACATATACTTAACTGCCTGA CCTATGGGCTACTAGTCATTGTGGCGCTCTGCGCGGGTTTTCTGCTTTGG GATCTCTCCAGCAGCCCACGGGATGGATTCTTCCATGGGAAAAGGGACTC GCACACATTAATCCTCGACCTGGAGCACATCCAGGAGCTTGCCGTAAATC CGGAGGCCGAACAGCGGGCACGGAATGTAAACTGCACCTTCTGGGACTGC CTGAACATCTACAAATGCGAGCACGACCGCCTAAAGGTCTACATCTATCC GCTGCAGGAGTTTGTTGACGAGCAGAGCGACAAAACGGCCACCACCCTGT CCAGCGAGTACTTCCAAATATTGGAGGCGGTACTAAAGAGTCGCTACTAC ACGTCCAATCCGAACGAAGCGTGCCTCTTTCTGCCCAGTTTGGATCTCCT GAACCAAAATGTCTTCGACAAGCACTTGGCGGGCGCTGCCTTGGCTTCAC TGGACTTCTGGGATCGTGGTGCCAACCACATCATCTTTAATATGCTGCCC GGCGGAGCTCCATCCTATAACACTGTGCTGGATGTGAATACGGATAATGC CATCATTTTTGGCGGTGGCTTTGACTCTTGGTCTTATCGCCCGGGCTTTG ATGTCGCCATTCCAGTCTGGAGTCCACGATTGGTGCGACAACATGCACAT GCGACGGCCCAGAGGAAGTTCCTATTGGTAGTAGCCCAGCTGAACATTCT TCCGCGCTTTGTGAGGACTCTGAGGGAGTTATCTCTGGCTCACAGCGAGC AATTGCTTCTTTTGGGAGCCTGCGAGAACTTGGATCTCACAATGCGCTGC CCTTTGTCGCAGCACCACAAATCGCTGGAGTATCCTCGGCTGCTGTCTCG CGGTAAATTTTGCCTGCTAGGTCGTAGTCTTCGCATGGGTCAACCCGATC TAGTAGAGATTATGTCTCAGCACTGTATTCCCGTAATTGCCGTGGACAAC TATGTGCTACCCTTCGAAGATGTGATTGATTGGTCATTGGCCTCCGTTCG TATACGCGAAAACGAACTGCATTCCGTAATGCAGAAGCTAAAAGCAATAT CGAGTGTTAAGATAGTTGAAATGCAGAAGCAAGTGCAGTGGTTGTTCTCC AAGTACTTCAAAGATCTGAAGACTGTGACACTAACTGCTCTTGAGGTGCT GGAGAGTAGGATCTTTCCGCTGCGAGCCCGTAGCAGTCGTCAGTGGAATA CCATTGATACCAACGCCCGTTCCACATTCAATCCCCTTTTCCTGCCGTCG CTGGCACCAAAGTCACAGGGCTTCACCGCCGTCATCCTCACCTACGATCG CGTGGAGAGTCTGTTCCTGCTGATTCAGAAGCTCGCTGTAGTGCCATCAT TGCAAAGCATTTTAGTGATTTGGAATAATCAGAAAAAATCTCCACCGCAC TTATCCACCTTTCCATCTATATCGAAACCGCTGAAAATTCGGCAAACCAA GGAGAACAAGCTATCCAATCGATTCTATCCATATCCAGAAATAGAAACGG AAGCTATCTTAACCATAGACGATGACATCATAATGCTGACCACTGATGAG TTGGATTTTGGCTATGAAGTTTGGCGAGAGTTTCCTGATCACATTGTTGG CTTTCCCAGTCGAATTCATGTTTGGGAAAATGTTACGATGCGCTGGCACT ACGAATCGGAGTGGACGAACCAAATATCAATGGTTCTTACCGGCGCTGCT TTCCATCACAAGTACTGGAGTCACATGTACACACATGCCATGCCGGGTGA TATCAAGGATTGGGTGGATGAGCACATGAATTGCGAGGACATTGCCATGA ATTTTCTGGTGGCCAACATCACCAACAATCCGCCCATTAAGGTTACTCCT CGAAAGAAGTTTAAGTGCCCGGAGTGCACCAATACGGAAATGCTCTCCGC TGATCTGAATCACATGCGTGAACGTTCGGCTTGCATTGATCGCTTCTCCA AAATCTACGGCCGCATGCCACTTCGCACGGTGGAGTTCAGAGCGGACCCT GTGTTATTCCGGGACAATTTCCCGGACAAGTTGAAGCGTTACAATGATAT TGGTAGCTTATAAGGGTCCTTAGCTTTGAGGCCAACATTCCAGAGGAACC TATGCAGATATACCAAAGACTTCTGAGAATACCGCTCAACTCTAATGGAA ATCTAATGTTCGTTTATATCATAGCAATACCTTCTTAACGGATAAAGAGG CCAACTTATCTGGATCTCGCTTAGAAAATCAATTTCGTCATTGGGATGTG ATAGAGATGACTATTGTAGGCAGGTCCGGTTGTATTCTTTTGACTTCTCA TTGGTACTCAAAAATCCAATTATTCCGTTTGGATTCTCACGTATTTGTCA AAATAGTTTAAATATGCTTTAGAACAATTAATTGAATTAACGTCCGTTCT TTGGACTTATTATAAGTTATTATTATTGTAGTTGTAGGTCGTAATATTGG CAGCTTTTATCTAGACTTTATTTTGATTTTAAATCAATAATTTAAAAAAC TGAAACTGGCCTGTAAATAAGAATTAAAATAATCATATCATAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 12034485..12036035 | 1551..1 | 7680 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 12033223..12034203 | 2691..1711 | 4845 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 12034261..12034420 | 1711..1552 | 755 | 98.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 16147166..16148716 | 1551..1 | 7755 | 100 | Minus |
2R | 25286936 | 2R | 16145897..16146884 | 2698..1711 | 4925 | 99.9 | Minus |
2R | 25286936 | 2R | 16146942..16147101 | 1711..1552 | 800 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 16148365..16149915 | 1551..1 | 7755 | 100 | Minus |
2R | 25260384 | 2R | 16147096..16148083 | 2698..1711 | 4925 | 99.8 | Minus |
2R | 25260384 | 2R | 16148141..16148300 | 1711..1552 | 800 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 12034261..12034420 | 1552..1711 | 98 | <- | Minus |
chr2R | 12033223..12034202 | 1712..2691 | 99 | <- | Minus |
chr2R | 12034485..12036035 | 1..1551 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ext2-RB | 1..2154 | 60..2213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ext2-RB | 1..2154 | 60..2213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ext2-RA | 1..2154 | 60..2213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ext2-RB | 1..2154 | 60..2213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ext2-RB | 1..2154 | 60..2213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10731-RA | 776..3464 | 1..2689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10731-RA | 776..3464 | 1..2689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ext2-RA | 799..3489 | 1..2691 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10731-RA | 776..3464 | 1..2689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ext2-RB | 4..2694 | 1..2691 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16145904..16146883 | 1712..2691 | 100 | <- | Minus |
2R | 16146942..16147101 | 1552..1711 | 100 | <- | Minus |
2R | 16147166..16148716 | 1..1551 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16145904..16146883 | 1712..2691 | 100 | <- | Minus |
2R | 16146942..16147101 | 1552..1711 | 100 | <- | Minus |
2R | 16147166..16148716 | 1..1551 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16145904..16146883 | 1712..2691 | 100 | <- | Minus |
2R | 16146942..16147101 | 1552..1711 | 100 | <- | Minus |
2R | 16147166..16148716 | 1..1551 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 12033409..12034388 | 1712..2691 | 100 | <- | Minus |
arm_2R | 12034447..12034606 | 1552..1711 | 100 | <- | Minus |
arm_2R | 12034671..12036221 | 1..1551 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16147103..16148082 | 1712..2691 | 100 | <- | Minus |
2R | 16148141..16148300 | 1552..1711 | 100 | <- | Minus |
2R | 16148365..16149915 | 1..1551 | 100 | Minus |
Translation from 59 to 2212
> GH02288.pep MTKIKNLLSFVTQSRAISHTNPREHILNCLTYGLLVIVALCAGFLLWDLS SSPRDGFFHGKRDSHTLILDLEHIQELAVNPEAEQRARNVNCTFWDCLNI YKCEHDRLKVYIYPLQEFVDEQSDKTATTLSSEYFQILEAVLKSRYYTSN PNEACLFLPSLDLLNQNVFDKHLAGAALASLDFWDRGANHIIFNMLPGGA PSYNTVLDVNTDNAIIFGGGFDSWSYRPGFDVAIPVWSPRLVRQHAHATA QRKFLLVVAQLNILPRFVRTLRELSLAHSEQLLLLGACENLDLTMRCPLS QHHKSLEYPRLLSRGKFCLLGRSLRMGQPDLVEIMSQHCIPVIAVDNYVL PFEDVIDWSLASVRIRENELHSVMQKLKAISSVKIVEMQKQVQWLFSKYF KDLKTVTLTALEVLESRIFPLRARSSRQWNTIDTNARSTFNPLFLPSLAP KSQGFTAVILTYDRVESLFLLIQKLAVVPSLQSILVIWNNQKKSPPHLST FPSISKPLKIRQTKENKLSNRFYPYPEIETEAILTIDDDIIMLTTDELDF GYEVWREFPDHIVGFPSRIHVWENVTMRWHYESEWTNQISMVLTGAAFHH KYWSHMYTHAMPGDIKDWVDEHMNCEDIAMNFLVANITNNPPIKVTPRKK FKCPECTNTEMLSADLNHMRERSACIDRFSKIYGRMPLRTVEFRADPVLF RDNFPDKLKRYNDIGSL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13049-PA | 717 | GF13049-PA | 1..717 | 1..717 | 3606 | 91.2 | Plus |
Dana\GF13249-PA | 765 | GF13249-PA | 56..760 | 58..714 | 884 | 31.8 | Plus |
Dana\GF11490-PA | 971 | GF11490-PA | 709..971 | 450..714 | 588 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22301-PA | 717 | GG22301-PA | 1..717 | 1..717 | 3807 | 98.5 | Plus |
Dere\GG20465-PA | 760 | GG20465-PA | 56..755 | 58..714 | 895 | 32.3 | Plus |
Dere\GG21945-PA | 972 | GG21945-PA | 710..972 | 450..714 | 583 | 46.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20211-PA | 648 | GH20211-PA | 3..648 | 75..717 | 2904 | 80.8 | Plus |
Dgri\GH20787-PA | 754 | GH20787-PA | 58..749 | 68..714 | 859 | 32 | Plus |
Dgri\GH23150-PA | 983 | GH23150-PA | 722..983 | 450..714 | 617 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sotv-PB | 717 | CG8433-PB | 1..717 | 1..717 | 3793 | 100 | Plus |
ttv-PB | 760 | CG10117-PB | 56..755 | 58..714 | 883 | 32.6 | Plus |
ttv-PA | 760 | CG10117-PA | 56..755 | 58..714 | 883 | 32.6 | Plus |
botv-PA | 972 | CG15110-PA | 710..972 | 450..714 | 617 | 46.6 | Plus |
ttv-PC | 299 | CG10117-PC | 33..294 | 467..714 | 499 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20737-PA | 720 | GI20737-PA | 1..720 | 1..717 | 3091 | 79.6 | Plus |
Dmoj\GI20872-PA | 761 | GI20872-PA | 89..756 | 92..714 | 856 | 32.1 | Plus |
Dmoj\GI18912-PA | 974 | GI18912-PA | 713..974 | 450..714 | 616 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11396-PA | 717 | GL11396-PA | 1..717 | 1..717 | 3501 | 89 | Plus |
Dper\GL11868-PA | 651 | GL11868-PA | 390..651 | 450..714 | 614 | 46.8 | Plus |
Dper\GL11446-PA | 676 | GL11446-PA | 228..656 | 227..608 | 509 | 31.4 | Plus |
Dper\GL16355-PA | 247 | GL16355-PA | 62..242 | 85..257 | 218 | 31.4 | Plus |
Dper\GL11871-PA | 101 | GL11871-PA | 11..101 | 588..714 | 153 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17244-PA | 717 | GA17244-PA | 1..717 | 1..717 | 3501 | 89.1 | Plus |
Dpse\GA10084-PA | 765 | GA10084-PA | 79..760 | 78..714 | 887 | 32.4 | Plus |
Dpse\GA13499-PA | 967 | GA13499-PA | 706..967 | 450..714 | 618 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20090-PA | 717 | GM20090-PA | 1..717 | 1..717 | 3841 | 99 | Plus |
Dsec\GM21554-PA | 760 | GM21554-PA | 61..755 | 70..714 | 898 | 32.5 | Plus |
Dsec\GM21933-PA | 972 | GM21933-PA | 710..972 | 450..714 | 578 | 46.3 | Plus |
Dsec\GM19618-PA | 73 | GM19618-PA | 1..73 | 645..717 | 406 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25567-PA | 717 | GD25567-PA | 1..717 | 1..717 | 3856 | 99.7 | Plus |
Dsim\GD11060-PA | 760 | GD11060-PA | 56..755 | 58..714 | 900 | 32.5 | Plus |
Dsim\GD11429-PA | 608 | GD11429-PA | 457..603 | 564..709 | 371 | 51 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20474-PA | 719 | GJ20474-PA | 1..719 | 1..717 | 3104 | 79.1 | Plus |
Dvir\GJ20607-PA | 757 | GJ20607-PA | 85..752 | 92..714 | 863 | 32.4 | Plus |
Dvir\GJ19767-PA | 977 | GJ19767-PA | 716..977 | 450..714 | 612 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15814-PA | 728 | GK15814-PA | 1..728 | 1..717 | 3188 | 80.6 | Plus |
Dwil\GK15839-PA | 776 | GK15839-PA | 83..771 | 81..714 | 880 | 32.5 | Plus |
Dwil\GK17964-PA | 938 | GK17964-PA | 677..933 | 450..710 | 610 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14097-PA | 717 | GE14097-PA | 1..717 | 1..717 | 3821 | 98.5 | Plus |
Dyak\GE13596-PA | 760 | GE13596-PA | 56..755 | 58..714 | 901 | 32.4 | Plus |
Dyak\GE12019-PA | 972 | GE12019-PA | 710..972 | 450..714 | 587 | 46.6 | Plus |
Translation from 59 to 2212
> GH02288.hyp MTKIKNLLSFVTQSRAISHTNPREHILNCLTYGLLVIVALCAGFLLWDLS SSPRDGFFHGKRDSHTLILDLEHIQELAVNPEAEQRARNVNCTFWDCLNI YKCEHDRLKVYIYPLQEFVDEQSDKTATTLSSEYFQILEAVLKSRYYTSN PNEACLFLPSLDLLNQNVFDKHLAGAALASLDFWDRGANHIIFNMLPGGA PSYNTVLDVNTDNAIIFGGGFDSWSYRPGFDVAIPVWSPRLVRQHAHATA QRKFLLVVAQLNILPRFVRTLRELSLAHSEQLLLLGACENLDLTMRCPLS QHHKSLEYPRLLSRGKFCLLGRSLRMGQPDLVEIMSQHCIPVIAVDNYVL PFEDVIDWSLASVRIRENELHSVMQKLKAISSVKIVEMQKQVQWLFSKYF KDLKTVTLTALEVLESRIFPLRARSSRQWNTIDTNARSTFNPLFLPSLAP KSQGFTAVILTYDRVESLFLLIQKLAVVPSLQSILVIWNNQKKSPPHLST FPSISKPLKIRQTKENKLSNRFYPYPEIETEAILTIDDDIIMLTTDELDF GYEVWREFPDHIVGFPSRIHVWENVTMRWHYESEWTNQISMVLTGAAFHH KYWSHMYTHAMPGDIKDWVDEHMNCEDIAMNFLVANITNNPPIKVTPRKK FKCPECTNTEMLSADLNHMRERSACIDRFSKIYGRMPLRTVEFRADPVLF RDNFPDKLKRYNDIGSL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ext2-PB | 717 | CG8433-PB | 1..717 | 1..717 | 3793 | 100 | Plus |
ttv-PB | 760 | CG10117-PB | 56..755 | 58..714 | 883 | 32.6 | Plus |
ttv-PA | 760 | CG10117-PA | 56..755 | 58..714 | 883 | 32.6 | Plus |
botv-PA | 972 | CG15110-PA | 710..972 | 450..714 | 617 | 46.6 | Plus |
ttv-PC | 299 | CG10117-PC | 33..294 | 467..714 | 499 | 38.9 | Plus |