Clone GH02315 Report

Search the DGRC for GH02315

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:23
Well:15
Vector:pOT2
Associated Gene/TranscriptCG4872-RA
Protein status:GH02315.pep: gold
Preliminary Size:1319
Sequenced Size:1279

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4872 2001-01-01 Release 2 assignment
CG4872 2002-01-03 Blastp of sequenced clone
CG4872 2003-01-01 Sim4 clustering to Release 3
CG4872 2008-04-29 Release 5.5 accounting
CG4872 2008-08-15 Release 5.9 accounting
CG4872 2008-12-18 5.12 accounting

Clone Sequence Records

GH02315.complete Sequence

1279 bp (1279 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075313

> GH02315.complete
TAAGATACTAAGTTGCATTCCAATTATAATTAGAATATTTTAATTTGCAA
GAATTACTTTGTTTTAAAACCATTTCATTGCCAATATGAGCAGCTCTACG
CCAGCTTACTACAATGCGGATGCTGTGCGTCAGGTTCTCACCTGGCCGCT
GGTCAATAAGGCAGTGGAATCTGCACTTGTAGCTATAGTTAAGCAGAATC
CGGAAACGCCCTCCACATCCTTTGCCTTTCAACCGAAGAGGACTTTTATT
CCATGCGGCAAGGAACCTGGCAAGGTTCTGCTCACCATGCCCGCCTATGT
GGGCAACTACAGGCTGGAATCGTCAAGGGATCCTGGGGAAGTGGAGCACA
CCCACTCAACACTGGCCTGCAAGTTGGTGACCTCGTTCAGTGGGAATCCC
CGACGGGATCCTCCGCTGCCCAGCATCCATGCCCATGTGCTGCTGTTCGA
CAATCAAACCGGTCAACTGTCGGCCATAATGGAGGGCACGGACTTGACCA
CCTGGCGCACTGTATCCGCTTCACTGGTGGCCACCAAGTATCTGTACTTC
AGGCGCTTTGGGGCGCAGGCGGAGCAGGAAAGGAATATCAACGTGGCCAT
CGTGGGCTGTGGAGTTCAAGGACAACTCCATGCTGCCGCTTTCTGCGCGA
ACTTCCGGGTGAGGCAGCTTAATCTTTACAATCGCACGCAGGCAAAGGCA
CTGGGTTTAGCGGACCAACTGCGGCAGAAATTGAACACCGAGAGCGGAAC
CCAGATTACTGTATGTCCAAGTCCTCACGAAGCTTGCCAGGATGCCGATA
TCATCTGCATCGCCACGTACTCCAAGGAGCCGCTTATCCAGTTGGCAGAT
CTGAAATCCAAACGGGCTGTTCATATTAACGCTGTGGGAGCCGGCGAAGT
TCACTTTTCGGAGGTGGCTCCAAAGATTTACCAGCAGGCCAAGGTCTACG
TGGATTGCTATGCCAATGCCGAGGCTGAATTGGTGGGATTACCTGCGCCG
ATCACCGCTGAAGTGGGTCAGATCATTCTGGATGGAAACTATCCCAAGGA
GCTAGAAATCAGCATCTTTCAATCCATGGGCATGGCCTCGGAGGACGCCT
GTGTGGCCCAGGCGGTTCAGGATTGCATTATCTCTAGCGCAAAGGATTCC
TGATTGCTGTCCAGCTGGCAAAGCGATTCCGGAACCAGCCCAAGCCAAAC
CAGTGAATTCTTAAACTTTAATGTGTATATGCGCGTATATAAAAAAGCAT
TTGGAAACATAAAAAAAAAAAAAAAAAAA

GH02315.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-RA 1311 CG4872-RA 44..1305 1..1262 6310 100 Plus
CG4872.a 1244 CG4872.a 69..1238 93..1262 5850 100 Plus
CG9104-RA 1783 CG9104-RA 1464..1647 1262..1079 920 100 Minus
CG9104-RA 1783 CG9104-RA 1737..1783 1080..1034 235 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16771000..16771875 1..879 4195 98.7 Plus
chrX 22417052 chrX 16771947..16772146 881..1080 970 99 Plus
chrX 22417052 chrX 16772236..16772417 1079..1260 895 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16881370..16882250 1..881 4405 100 Plus
X 23542271 X 16882320..16882519 881..1080 1000 100 Plus
X 23542271 X 16882609..16882792 1079..1262 920 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16889468..16890348 1..881 4405 100 Plus
X 23527363 X 16890418..16890617 881..1080 1000 100 Plus
X 23527363 X 16890707..16890890 1079..1262 920 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:30:45 has no hits.

GH02315.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:31:32 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16771000..16771877 1..881 98 -> Plus
chrX 16771948..16772145 882..1079 98 -> Plus
chrX 16772237..16772417 1080..1260 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:07:11 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 1..1068 86..1153 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:57:17 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 1..1068 86..1153 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:08:01 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 1..1068 86..1153 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:22:03 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 1..1068 86..1153 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:33:01 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 1..1068 86..1153 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:21:48 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 1..1260 1..1260 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:57:16 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 1..1260 1..1260 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:01 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 24..1283 1..1260 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:22:03 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 1..1260 1..1260 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:33:01 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 24..1283 1..1260 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:32 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
X 16881370..16882250 1..881 100 -> Plus
X 16882321..16882518 882..1079 100 -> Plus
X 16882610..16882790 1080..1260 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:32 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
X 16881370..16882250 1..881 100 -> Plus
X 16882321..16882518 882..1079 100 -> Plus
X 16882610..16882790 1080..1260 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:32 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
X 16881370..16882250 1..881 100 -> Plus
X 16882321..16882518 882..1079 100 -> Plus
X 16882610..16882790 1080..1260 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:01 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16775403..16776283 1..881 100 -> Plus
arm_X 16776354..16776551 882..1079 100 -> Plus
arm_X 16776643..16776823 1080..1260 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:57 Download gff for GH02315.complete
Subject Subject Range Query Range Percent Splice Strand
X 16890419..16890616 882..1079 100 -> Plus
X 16890708..16890888 1080..1260 100   Plus
X 16889468..16890348 1..881 100 -> Plus

GH02315.pep Sequence

Translation from 85 to 1152

> GH02315.pep
MSSSTPAYYNADAVRQVLTWPLVNKAVESALVAIVKQNPETPSTSFAFQP
KRTFIPCGKEPGKVLLTMPAYVGNYRLESSRDPGEVEHTHSTLACKLVTS
FSGNPRRDPPLPSIHAHVLLFDNQTGQLSAIMEGTDLTTWRTVSASLVAT
KYLYFRRFGAQAEQERNINVAIVGCGVQGQLHAAAFCANFRVRQLNLYNR
TQAKALGLADQLRQKLNTESGTQITVCPSPHEACQDADIICIATYSKEPL
IQLADLKSKRAVHINAVGAGEVHFSEVAPKIYQQAKVYVDCYANAEAELV
GLPAPITAEVGQIILDGNYPKELEISIFQSMGMASEDACVAQAVQDCIIS
SAKDS*

GH02315.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21752-PA 344 GF21752-PA 1..341 1..354 1154 64.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19086-PA 355 GG19086-PA 1..355 1..355 1643 83.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24738-PA 369 GH24738-PA 1..369 1..353 1123 60.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-PA 355 CG4872-PA 1..355 1..355 1829 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14778-PA 361 GI14778-PA 1..361 1..353 1139 59.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22385-PA 354 GL22385-PA 5..354 4..353 1184 61 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18493-PA 354 GA18493-PA 5..354 4..353 1184 61.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13473-PA 353 GM13473-PA 1..342 1..345 1584 86.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17316-PA 352 GD17316-PA 4..344 8..348 1644 88.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18824-PA 168 GJ18824-PA 82..168 267..353 314 66.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17631-PA 357 GE17631-PA 1..357 1..355 1573 81.8 Plus

GH02315.hyp Sequence

Translation from 85 to 1152

> GH02315.hyp
MSSSTPAYYNADAVRQVLTWPLVNKAVESALVAIVKQNPETPSTSFAFQP
KRTFIPCGKEPGKVLLTMPAYVGNYRLESSRDPGEVEHTHSTLACKLVTS
FSGNPRRDPPLPSIHAHVLLFDNQTGQLSAIMEGTDLTTWRTVSASLVAT
KYLYFRRFGAQAEQERNINVAIVGCGVQGQLHAAAFCANFRVRQLNLYNR
TQAKALGLADQLRQKLNTESGTQITVCPSPHEACQDADIICIATYSKEPL
IQLADLKSKRAVHINAVGAGEVHFSEVAPKIYQQAKVYVDCYANAEAELV
GLPAPITAEVGQIILDGNYPKELEISIFQSMGMASEDACVAQAVQDCIIS
SAKDS*

GH02315.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-PA 355 CG4872-PA 1..355 1..355 1829 100 Plus