Clone GH02317 Report

Search the DGRC for GH02317

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:23
Well:17
Vector:pOT2
Associated Gene/TranscriptPpt2-RA
Protein status:GH02317.pep: gold
Sequenced Size:1256

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4851 2003-01-01 Sim4 clustering to Release 3
CG4851 2005-01-26 Blastp of sequenced clone
CG4851 2008-04-29 Release 5.5 accounting
CG4851 2008-08-15 Release 5.9 accounting
Ppt2 2008-12-18 5.12 accounting

Clone Sequence Records

GH02317.complete Sequence

1256 bp (1256 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021446

> GH02317.complete
AGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTCCAAAGCGGGTAGC
AAGAAGAAGAGCGGCTAATAAAGATACGGATACATCAACAACAACAGTCG
GAAATCCATTGTTCCCCACAAAATGAGACTTCGTTTGCAAGTCCTGGTGG
CCCTGTTAACCTGCTCGTCCATTTCCGTCTCACTGGCCTACAAACCGGTG
GTCATACTCCATGGAATTCTATCAGGAGCCGAATCGATGGCCTCTCTGGT
CCGGGAAATCGAAGAGTTTCATCCTGGCACTATCGTCTACAACTGCGACA
AGTTCAATGGATGGTACAGCTTGGAGAACGCCTGGCGACAGGTCGATCAG
GTTAGGGATTATCTCAACGAGGTGGGCAAACTGCATCCAGAGGGCATCAT
TGTGCTGGGATACTCACAAGGAGGCCTTTTGGCCCGGGCGGCCATCCAAA
GTCTGCCCGAGCACAATGTGAAGACCTTTATATCTCTATCCTCGCCACAG
GCGGGGCAATACGGCACTAGCTTCTTGCATCTAATCTTTCCCGACTTGGC
GGCCAAGACAGCCTTCGAATTGTTCTACTCGCGCGTGGGACAGCACACCT
CGGTTGGTGGCTACTGGAACGATCCGCAGAGGCAGGATCTCTACCTGAAG
TACAGCGAATTCCTGCCACTGATCAATAATGAGAAGAAGACCTCCAACTC
CACATCTTTTAAGATGGGAATGGTGCGTCTAAATAAGTTGGTAATGATCG
GCGGACCCAACGACGATGTGATTACTCCGTGGCAATCGAGCCACTTTGGT
TACTTTGACGAGAATATGGATGTGATTCCATTTATTAGGCGACCGATTTT
CACCAGCGACTCCATTGGCATCAGGACGCTTCAGGAGGCCGGCAAGCTTA
TCATTGTGGTCAAACCCCATGTTCATCATCTTGCCTGGCACACGCGAAGG
GATGTCATCCACGAAGTGATATTTCCATATCTGGACTGAATAAGAAACCA
AAACTACTGAACTATACTGAGCGATCAAACGGCTGTGATCGGAAAGGCGG
ACAAAGGCTCACTCTCATCAATAAGCATTAATGTGAAGTTGCTGCCTGGG
TAATTAGGCTACAAACATGATCTTTTATTGGTAACTAAGCTATATATTTT
TAAAACAGCCTGCGTATTGCAGCAGAGATTTTTACAAAAACTCATAAACT
ACTTATAAATAGCCAAATAAAGTGAAACTAGAAATTTTTAAAAAAAAAAA
AAAAAA

GH02317.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-RA 1471 Ppt2-RA 237..1445 34..1242 6045 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11280208..11280658 789..1239 2255 100 Plus
chr2L 23010047 chr2L 11279871..11280144 517..790 1370 100 Plus
chr2L 23010047 chr2L 11279021..11279253 34..266 1135 99.1 Plus
chr2L 23010047 chr2L 11279353..11279497 265..409 710 99.3 Plus
chr2L 23010047 chr2L 11279558..11279666 408..516 545 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11281470..11281923 789..1242 2270 100 Plus
2L 23513712 2L 11281133..11281406 517..790 1370 100 Plus
2L 23513712 2L 11280283..11280515 34..266 1165 100 Plus
2L 23513712 2L 11280615..11280759 265..409 725 100 Plus
2L 23513712 2L 11280820..11280928 408..516 545 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11281470..11281923 789..1242 2270 100 Plus
2L 23513712 2L 11281133..11281406 517..790 1370 100 Plus
2L 23513712 2L 11280283..11280515 34..266 1165 100 Plus
2L 23513712 2L 11280615..11280759 265..409 725 100 Plus
2L 23513712 2L 11280820..11280928 408..516 545 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:03:43 has no hits.

GH02317.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:04:49 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11279019..11279253 32..266 98 -> Plus
chr2L 11279355..11279496 267..408 99 -> Plus
chr2L 11279559..11279666 409..516 100 -> Plus
chr2L 11279871..11280144 517..790 100 -> Plus
chr2L 11280210..11280658 791..1239 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:07:13 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 1..867 123..989 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:12:44 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 1..867 123..989 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:54:59 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 1..867 123..989 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:57:16 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
CG4851-RA 1..867 123..989 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:53:29 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 1..867 123..989 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:07:54 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 1..1175 65..1239 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:12:44 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 1..1175 65..1239 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:59 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 1..1191 49..1239 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:57:16 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
CG4851-RA 1..1175 65..1239 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:53:29 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 1..1191 49..1239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:04:49 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11280281..11280515 32..266 99 -> Plus
2L 11280617..11280758 267..408 100 -> Plus
2L 11280821..11280928 409..516 100 -> Plus
2L 11281133..11281406 517..790 100 -> Plus
2L 11281472..11281920 791..1239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:04:49 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11280281..11280515 32..266 99 -> Plus
2L 11280617..11280758 267..408 100 -> Plus
2L 11280821..11280928 409..516 100 -> Plus
2L 11281133..11281406 517..790 100 -> Plus
2L 11281472..11281920 791..1239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:04:49 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11280281..11280515 32..266 99 -> Plus
2L 11280617..11280758 267..408 100 -> Plus
2L 11280821..11280928 409..516 100 -> Plus
2L 11281133..11281406 517..790 100 -> Plus
2L 11281472..11281920 791..1239 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:59 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11280281..11280515 32..266 99 -> Plus
arm_2L 11280617..11280758 267..408 100 -> Plus
arm_2L 11280821..11280928 409..516 100 -> Plus
arm_2L 11281133..11281406 517..790 100 -> Plus
arm_2L 11281472..11281920 791..1239 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:32:39 Download gff for GH02317.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11280281..11280515 32..266 99 -> Plus
2L 11280617..11280758 267..408 100 -> Plus
2L 11280821..11280928 409..516 100 -> Plus
2L 11281133..11281406 517..790 100 -> Plus
2L 11281472..11281920 791..1239 100   Plus

GH02317.pep Sequence

Translation from 122 to 988

> GH02317.pep
MRLRLQVLVALLTCSSISVSLAYKPVVILHGILSGAESMASLVREIEEFH
PGTIVYNCDKFNGWYSLENAWRQVDQVRDYLNEVGKLHPEGIIVLGYSQG
GLLARAAIQSLPEHNVKTFISLSSPQAGQYGTSFLHLIFPDLAAKTAFEL
FYSRVGQHTSVGGYWNDPQRQDLYLKYSEFLPLINNEKKTSNSTSFKMGM
VRLNKLVMIGGPNDDVITPWQSSHFGYFDENMDVIPFIRRPIFTSDSIGI
RTLQEAGKLIIVVKPHVHHLAWHTRRDVIHEVIFPYLD*

GH02317.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14769-PA 165 GF14769-PA 1..152 1..152 694 86.8 Plus
Dana\GF14770-PA 114 GF14770-PA 1..114 175..288 544 84.2 Plus
Dana\GF19174-PA 306 GF19174-PA 90..281 72..262 161 26.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23717-PA 288 GG23717-PA 1..288 1..288 1481 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13391-PA 284 GH13391-PA 1..284 5..288 1179 75.4 Plus
Dgri\GH24517-PA 306 GH24517-PA 89..277 72..259 148 25.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-PA 288 CG4851-PA 1..288 1..288 1511 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20683-PA 284 GI20683-PA 1..284 5..288 1261 79.9 Plus
Dmoj\GI15083-PA 311 GI15083-PA 38..282 25..259 184 28.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19554-PA 282 GL19554-PA 1..282 3..288 1271 81.5 Plus
Dper\GL13042-PA 265 GL13042-PA 50..238 72..259 152 26.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18478-PA 282 GA18478-PA 1..282 3..288 1271 81.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18996-PA 288 GM18996-PA 1..288 1..288 1510 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23774-PA 288 GD23774-PA 1..288 1..288 1508 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13278-PA 284 GJ13278-PA 1..284 5..288 1218 77.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21057-PA 285 GK21057-PA 1..285 1..288 1176 74.3 Plus
Dwil\GK10327-PA 303 GK10327-PA 32..276 25..259 186 28.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18522-PA 288 GE18522-PA 1..288 1..288 1471 94.4 Plus
Dyak\GE17436-PA 266 GE17436-PA 67..241 90..262 154 27.4 Plus

GH02317.hyp Sequence

Translation from 122 to 988

> GH02317.hyp
MRLRLQVLVALLTCSSISVSLAYKPVVILHGILSGAESMASLVREIEEFH
PGTIVYNCDKFNGWYSLENAWRQVDQVRDYLNEVGKLHPEGIIVLGYSQG
GLLARAAIQSLPEHNVKTFISLSSPQAGQYGTSFLHLIFPDLAAKTAFEL
FYSRVGQHTSVGGYWNDPQRQDLYLKYSEFLPLINNEKKTSNSTSFKMGM
VRLNKLVMIGGPNDDVITPWQSSHFGYFDENMDVIPFIRRPIFTSDSIGI
RTLQEAGKLIIVVKPHVHHLAWHTRRDVIHEVIFPYLD*

GH02317.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-PA 288 CG4851-PA 1..288 1..288 1511 100 Plus