Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH02414.complete Sequence
3121 bp (3121 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060231
> GH02414.complete
CAACAACCACACCACCGTTCAGAAACAGCAAAAGGAGCAGCACATCAACG
AGCTGCGCCGCAAGAGTTTGGGCAATGTGCTGGAGAGCAGTCAAAGGAGC
ACGTACTTCGAACAGGAGTACAAGTCTTCAGCACCACCAGATACGCCGGA
TATAGTGAAATCATCGCTGCCCAAGGAGGATGCACCACTACTAAAGAAAT
TTGGGCCACCACAGCGTCATCACTACATGCCCAATTCGTACCAGAGTCCG
CAGCTGAACAAGCAGGGCAATAGCAATAGCACCACCACCAGCAGTACCTC
AGTAAGGAGCACCACAGTGGTGCAACAGCAACATCACCAGCAACAACATC
AGCAAATCAAGCCAAGTATTGTGGAAACCCCGGCGACACCACAGCCACAA
GTTCCGCCCGAAGACGAGATACCCCACAACATAGTGTTCAACAATGTGAG
CGCCTTTACATCGATGAGCAGGCGAAATCACGAGGAGGATTCTCACCAGG
GTACGCAATCGGGTTCCAGGGTGAATCGATTGAGCAAGTGCGATTCGTGG
AACCAAATTTGCCAGCTGCAACAGACTGCGGGTCCAAGTCCGGCCAAATA
CAACCAGCCCGGTTCTCCAGGCGAACTGAGACGCACCAAATCGGGACACT
CACTCGCCGTGCCCAAACTCTACGAAGCGGGCATTGATAAGGCCCAGGTC
AGCGAGAAACAGCGTACGGTGGCTGCCTACTTCTCCGGCCAGAAGTCACC
AACTGGCGGCCAAGTGGAGGAGTTACGAACATCGATGACGACAACGACCT
CAAGTCGAAAATCGGCCATTAATCGCACGAAAACGAGTGAAAAACTTTCG
GCGGCAGCTCGAAAATCATTGAGTTCGTTGACCACCACATCGAATGGTAA
CGTTTCCACCGCCGGTTTGGGCATGGTGGTGCGTGGTGGTGGTGTTGGTG
GCATTGGTGGTGGTGCTGCACTCAGTCGCAGTGCCACCATGCCGCACATC
GCGAATCTCAATCTGCTGGACGAGAGCAATGTGGAGGATGCCTTCGAGCA
GCTAATGATGGGTGCCTAAAAATACCATATAAATAATCAAGAAATAACAA
AACAGTCCAGCCAACCACTCAACCACTCAAGCCAACAATTTAACCCACCC
AAAAGAAAATATATGAAAGAACAAACGCATTGAGGCATTCCAGTTCGAAA
CTGGATGAGAACATGATAAGAATAATCTCAATAATCTATAAAAAACAAGA
AATAAATGAAATATGAAGATATACGAAATCGAAATTGAATCGACATCGAA
ACGGAATGATAACTGTAACTTGTAACGGCAACTGTACTGATTAATGTTTA
CTGATTTACTCAAGCGCTACTGTTGAGCCTAGGATTAGCTTTGTTTTAGT
CAAACCCACCACCCAGAACCCCCACCCACTTTTCCCATGTTCGAATCGAG
CTAGTGACGAAGCAGTTAGAAAATCGCAGTTAACTATATAAAAAGAGCCA
GCTATTGAAAATTGAGGGACCACAGGCGGTTTCTTACTTCGTTTTTTTTT
TTCCAATTCAATTTTCAAAACACTTAACTCACAAACACGCTTCAATCGCG
ACAATAAAGAGATTAAATAAAAATTTAAATGAAAATGTTTGCTGCACTGC
GTCCCAATGAAGCCCCAAACAACAACAACAACAACAACAATAAGCAACAA
TAGCAACAAAAGCAACAACTTGATCAATATTCCGAGATTTCCCAGCACAA
GAGCTCCTCGTCCAGCGAACAGCGAACGGAAACCAAGTCCAAGGATGGCG
GTGCCACTGTGACCACAACGACAACAAAGGTTACCACACGCACTGTCAGC
GGAAGTGCTGCCTCCAAAAACATCTCACCCTTGGCTAAATTCAAGCAGCT
GGACAAACAGGCAGCCGCCCAGCAGGCGCAAAAATCATCTCCAACAACAA
GCACACCCACGACCCCCGGCGGTTCGGCACAACCGTTGTTCAAATTTACC
GATCCGGCATTAAATGCGCGCGCCGCCACTGTCAAGGATCAACTTCTGCA
GTGGTGTAAGCATAAAACGCAGGAATATGAGAACGTCCAAATAAACAACT
TTAGCTCGAGCTGGTCAGACGGCCTGGCCTTTTGTGCGCTGATACACCAT
TTCTTGCCAGATGCATTTGATTACACCACACTAACCAAGCAGACGCGACG
ACACAACTTTGAGCTGGCCTTCAGCGTTGCTGATGAGAAGGCTGGCATTG
CACCACTGCTGGATGTGGAGGACATGGTGGAGATGAGTCGTCCTGACTGG
AAATGCGTATTCGTCTACGTGCAGAGCATATATCGCCGATTCCGGAATTG
TCAGTGAGTAGAATTAAAGCAACCATCGAAATCAGCGGCAGCGGAAGCAG
CAGCAGCAGCAGCAGCAGAACAGTCCAAATCCAGATCCAAATCCAAGTCA
ACTCAACGGCAACAGCAGAAACTCATTAAATTTTAAGCACACACCATATA
CACATTATATACACATCCCCTTTGGCATTTTGTGTTTAGACACACCCCAT
GAATCCAGCATAAACCATTTGAATCCACAATAATCTATAATAATCCTACG
CCTATGTGGAAGCCACTCAAGAATCCGTCATCCTGCGAATATCTATCTAA
TTGTATAATCGGCATTATATGTATTGTATATTCTTCAACTGAAGCGCAAA
TGGCTCGTCGAACGTGAACAGCCGACTCTTTGTACGTTTTTTTGTGTTTG
TTTTACCCCTTTTTTACTATTATATTACGATTACGCATTATTATTTGTTA
TTATCGAACTTGAAGCAGAATCTATGCAAATAATTGTTGAATTATATATA
TTTTTTTTGTCATAATTTTAATTGCGGAGAAAGAAGATGCAGAGCAGTTA
CTAACCCCTGTCCGGCGGTCATCGACAATGGATTTAGTATATAAGATACG
TCCCGATGCCGTCGCTCACATTGATGAACTACTGTAATAATACACATATA
TTCTATGTACGTACGTGTAACGAGAACGAAACATTTACTAACCGATGCCA
AAATAAAATGGCCGCAAAGAAATAAAAAAAAAACAAACAAACAAATGAAA
CCCAAAAAAAAAAAAAAAAAA
GH02414.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34417.a | 3046 | CG34417.a | 1681..3045 | 1741..3105 | 6825 | 100 | Plus |
CG34417.e | 2313 | CG34417.e | 944..2308 | 1741..3105 | 6825 | 100 | Plus |
CG34417.h | 3969 | CG34417.h | 2604..3968 | 1741..3105 | 6825 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 6474556..6476301 | 1..1740 | 8590 | 99.6 | Plus |
chrX | 22417052 | chrX | 6480591..6481458 | 2234..3103 | 4255 | 99.5 | Plus |
chrX | 22417052 | chrX | 6480352..6480505 | 2080..2233 | 770 | 100 | Plus |
chrX | 22417052 | chrX | 6479243..6479390 | 1934..2081 | 740 | 100 | Plus |
chrX | 22417052 | chrX | 6478133..6478236 | 1830..1933 | 520 | 100 | Plus |
chrX | 22417052 | chrX | 6477982..6478071 | 1741..1830 | 450 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6582283..6584022 | 1..1740 | 8700 | 100 | Plus |
X | 23542271 | X | 6588304..6589175 | 2234..3105 | 4360 | 100 | Plus |
X | 23542271 | X | 6588065..6588218 | 2080..2233 | 770 | 100 | Plus |
X | 23542271 | X | 6586957..6587104 | 1934..2081 | 740 | 100 | Plus |
X | 23542271 | X | 6585847..6585950 | 1830..1933 | 520 | 100 | Plus |
X | 23542271 | X | 6585696..6585785 | 1741..1830 | 450 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 6590381..6592120 | 1..1740 | 8700 | 100 | Plus |
X | 23527363 | X | 6596402..6597273 | 2234..3105 | 4360 | 100 | Plus |
X | 23527363 | X | 6596163..6596316 | 2080..2233 | 770 | 100 | Plus |
X | 23527363 | X | 6595055..6595202 | 1934..2081 | 740 | 100 | Plus |
X | 23527363 | X | 6593945..6594048 | 1830..1933 | 520 | 100 | Plus |
X | 23527363 | X | 6593794..6593883 | 1741..1830 | 450 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 22:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6897 | 258..431 | 212 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6895 | 240..400 | 202 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2416 | 248..354 | 201 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6916 | 205..355 | 188 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6970 | 248..421 | 185 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2598..2981 | 1..355 | 183 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2429 | 238..355 | 176 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2410 | 243..354 | 174 | 64.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1036..1183 | 227..372 | 168 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2567 | 240..455 | 167 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2478 | 205..353 | 166 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6844 | 276..400 | 161 | 62.8 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 934..1065 | 1151..1284 | 151 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2500 | 182..354 | 149 | 59.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1030..1135 | 258..355 | 140 | 66 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6808 | 323..400 | 137 | 67.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1137 | 324..399 | 135 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2408 | 305..400 | 133 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2663 | 1..360 | 133 | 55.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6775 | 305..355 | 133 | 77.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2741..2827 | 272..354 | 129 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2637 | 20..362 | 120 | 54.4 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 980..1022 | 322..364 | 116 | 74.4 | Plus |
GH02414.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:06:48 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 6479243..6479390 | 1934..2081 | 100 | -> | Plus |
chrX | 6480354..6480505 | 2082..2233 | 100 | -> | Plus |
chrX | 6474556..6474815 | 1..260 | 100 | == | Plus |
chrX | 6474926..6476228 | 371..1667 | 96 | == | Plus |
chrX | 6476281..6476301 | 1720..1740 | 100 | -> | Plus |
chrX | 6477982..6478071 | 1741..1830 | 100 | -> | Plus |
chrX | 6478134..6478236 | 1831..1933 | 100 | -> | Plus |
chrX | 6480591..6481458 | 2234..3103 | 95 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:07:27 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34417-RH | 13872..14940 | 1..1069 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:18 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34417-RJ | 13872..14940 | 1..1069 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:08:15 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34417-RL | 13521..14589 | 1..1069 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:10 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34417-RH | 13872..14940 | 1..1069 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:43 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34417-RW | 13359..14427 | 1..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:01:25 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34417-RG | 1..3098 | 1..3103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:18 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34417-RJ | 14440..17542 | 1..3103 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:08:15 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34417-RJ | 14440..17542 | 1..3103 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:10 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34417-RG | 1..3098 | 1..3103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:43 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34417-RJ | 14440..17542 | 1..3103 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:48 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6582283..6584022 | 1..1740 | 100 | -> | Plus |
X | 6585696..6585785 | 1741..1830 | 100 | -> | Plus |
X | 6585848..6585950 | 1831..1933 | 100 | -> | Plus |
X | 6586957..6587104 | 1934..2081 | 100 | -> | Plus |
X | 6588067..6588218 | 2082..2233 | 100 | -> | Plus |
X | 6588304..6589173 | 2234..3103 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:48 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6582283..6584022 | 1..1740 | 100 | -> | Plus |
X | 6585696..6585785 | 1741..1830 | 100 | -> | Plus |
X | 6585848..6585950 | 1831..1933 | 100 | -> | Plus |
X | 6586957..6587104 | 1934..2081 | 100 | -> | Plus |
X | 6588067..6588218 | 2082..2233 | 100 | -> | Plus |
X | 6588304..6589173 | 2234..3103 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:48 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6582283..6584022 | 1..1740 | 100 | -> | Plus |
X | 6585696..6585785 | 1741..1830 | 100 | -> | Plus |
X | 6585848..6585950 | 1831..1933 | 100 | -> | Plus |
X | 6586957..6587104 | 1934..2081 | 100 | -> | Plus |
X | 6588067..6588218 | 2082..2233 | 100 | -> | Plus |
X | 6588304..6589173 | 2234..3103 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:08:15 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6482100..6482251 | 2082..2233 | 100 | -> | Plus |
arm_X | 6480990..6481137 | 1934..2081 | 100 | -> | Plus |
arm_X | 6476316..6478055 | 1..1740 | 100 | -> | Plus |
arm_X | 6479729..6479818 | 1741..1830 | 100 | -> | Plus |
arm_X | 6479881..6479983 | 1831..1933 | 100 | -> | Plus |
arm_X | 6482337..6483206 | 2234..3103 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:46 Download gff for
GH02414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6590381..6592120 | 1..1740 | 100 | -> | Plus |
X | 6593794..6593883 | 1741..1830 | 100 | -> | Plus |
X | 6593946..6594048 | 1831..1933 | 100 | -> | Plus |
X | 6595055..6595202 | 1934..2081 | 100 | -> | Plus |
X | 6596165..6596316 | 2082..2233 | 100 | -> | Plus |
X | 6596402..6597271 | 2234..3103 | 100 | | Plus |
GH02414.hyp Sequence
Translation from 1 to 1068
> GH02414.hyp
NNHTTVQKQQKEQHINELRRKSLGNVLESSQRSTYFEQEYKSSAPPDTPD
IVKSSLPKEDAPLLKKFGPPQRHHYMPNSYQSPQLNKQGNSNSTTTSSTS
VRSTTVVQQQHHQQQHQQIKPSIVETPATPQPQVPPEDEIPHNIVFNNVS
AFTSMSRRNHEEDSHQGTQSGSRVNRLSKCDSWNQICQLQQTAGPSPAKY
NQPGSPGELRRTKSGHSLAVPKLYEAGIDKAQVSEKQRTVAAYFSGQKSP
TGGQVEELRTSMTTTTSSRKSAINRTKTSEKLSAAARKSLSSLTTTSNGN
VSTAGLGMVVRGGGVGGIGGGAALSRSATMPHIANLNLLDESNVEDAFEQ
LMMGA*
GH02414.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34417-PW | 4808 | CG34417-PW | 4454..4808 | 1..355 | 1825 | 100 | Plus |
CG34417-PL | 4862 | CG34417-PL | 4508..4862 | 1..355 | 1825 | 100 | Plus |
CG34417-PX | 4925 | CG34417-PX | 4571..4925 | 1..355 | 1825 | 100 | Plus |
CG34417-PU | 4979 | CG34417-PU | 4625..4979 | 1..355 | 1825 | 100 | Plus |
CG34417-PJ | 4979 | CG34417-PJ | 4625..4979 | 1..355 | 1825 | 100 | Plus |
GH02414.pep Sequence
Translation from 226 to 1068
> GH02414.pep
MPNSYQSPQLNKQGNSNSTTTSSTSVRSTTVVQQQHHQQQHQQIKPSIVE
TPATPQPQVPPEDEIPHNIVFNNVSAFTSMSRRNHEEDSHQGTQSGSRVN
RLSKCDSWNQICQLQQTAGPSPAKYNQPGSPGELRRTKSGHSLAVPKLYE
AGIDKAQVSEKQRTVAAYFSGQKSPTGGQVEELRTSMTTTTSSRKSAINR
TKTSEKLSAAARKSLSSLTTTSNGNVSTAGLGMVVRGGGVGGIGGGAALS
RSATMPHIANLNLLDESNVEDAFEQLMMGA*
GH02414.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34417-PW | 4808 | CG34417-PW | 4529..4808 | 1..280 | 1428 | 100 | Plus |
CG34417-PL | 4862 | CG34417-PL | 4583..4862 | 1..280 | 1428 | 100 | Plus |
CG34417-PX | 4925 | CG34417-PX | 4646..4925 | 1..280 | 1428 | 100 | Plus |
CG34417-PU | 4979 | CG34417-PU | 4700..4979 | 1..280 | 1428 | 100 | Plus |
CG34417-PJ | 4979 | CG34417-PJ | 4700..4979 | 1..280 | 1428 | 100 | Plus |
CG34417-PH | 4979 | CG34417-PH | 4700..4979 | 1..280 | 1428 | 100 | Plus |
CG34417-PT | 5182 | CG34417-PT | 4700..4977 | 1..278 | 1418 | 100 | Plus |
CG34417-PR | 5128 | CG34417-PR | 4700..4922 | 1..223 | 1143 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM12498-PA | 1947 | GM12498-PA | 1673..1947 | 1..280 | 1406 | 95.7 | Plus |