Clone GH02414 Report

Search the DGRC for GH02414

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:24
Well:14
Vector:pOT2
Associated Gene/TranscriptCG34417-RG
Protein status:GH02414.pep: validated full length
Preliminary Size:3048
Sequenced Size:3121

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3960 2001-01-01 Release 2 assignment
CG3960 2001-09-19 Blastp of sequenced clone
CG3960 2003-01-01 Sim4 clustering to Release 3
CG34417 2008-04-29 Release 5.5 accounting
CG34417 2008-08-15 Release 5.9 accounting
CG34417 2008-12-18 5.12 accounting

Clone Sequence Records

GH02414.complete Sequence

3121 bp (3121 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060231

> GH02414.complete
CAACAACCACACCACCGTTCAGAAACAGCAAAAGGAGCAGCACATCAACG
AGCTGCGCCGCAAGAGTTTGGGCAATGTGCTGGAGAGCAGTCAAAGGAGC
ACGTACTTCGAACAGGAGTACAAGTCTTCAGCACCACCAGATACGCCGGA
TATAGTGAAATCATCGCTGCCCAAGGAGGATGCACCACTACTAAAGAAAT
TTGGGCCACCACAGCGTCATCACTACATGCCCAATTCGTACCAGAGTCCG
CAGCTGAACAAGCAGGGCAATAGCAATAGCACCACCACCAGCAGTACCTC
AGTAAGGAGCACCACAGTGGTGCAACAGCAACATCACCAGCAACAACATC
AGCAAATCAAGCCAAGTATTGTGGAAACCCCGGCGACACCACAGCCACAA
GTTCCGCCCGAAGACGAGATACCCCACAACATAGTGTTCAACAATGTGAG
CGCCTTTACATCGATGAGCAGGCGAAATCACGAGGAGGATTCTCACCAGG
GTACGCAATCGGGTTCCAGGGTGAATCGATTGAGCAAGTGCGATTCGTGG
AACCAAATTTGCCAGCTGCAACAGACTGCGGGTCCAAGTCCGGCCAAATA
CAACCAGCCCGGTTCTCCAGGCGAACTGAGACGCACCAAATCGGGACACT
CACTCGCCGTGCCCAAACTCTACGAAGCGGGCATTGATAAGGCCCAGGTC
AGCGAGAAACAGCGTACGGTGGCTGCCTACTTCTCCGGCCAGAAGTCACC
AACTGGCGGCCAAGTGGAGGAGTTACGAACATCGATGACGACAACGACCT
CAAGTCGAAAATCGGCCATTAATCGCACGAAAACGAGTGAAAAACTTTCG
GCGGCAGCTCGAAAATCATTGAGTTCGTTGACCACCACATCGAATGGTAA
CGTTTCCACCGCCGGTTTGGGCATGGTGGTGCGTGGTGGTGGTGTTGGTG
GCATTGGTGGTGGTGCTGCACTCAGTCGCAGTGCCACCATGCCGCACATC
GCGAATCTCAATCTGCTGGACGAGAGCAATGTGGAGGATGCCTTCGAGCA
GCTAATGATGGGTGCCTAAAAATACCATATAAATAATCAAGAAATAACAA
AACAGTCCAGCCAACCACTCAACCACTCAAGCCAACAATTTAACCCACCC
AAAAGAAAATATATGAAAGAACAAACGCATTGAGGCATTCCAGTTCGAAA
CTGGATGAGAACATGATAAGAATAATCTCAATAATCTATAAAAAACAAGA
AATAAATGAAATATGAAGATATACGAAATCGAAATTGAATCGACATCGAA
ACGGAATGATAACTGTAACTTGTAACGGCAACTGTACTGATTAATGTTTA
CTGATTTACTCAAGCGCTACTGTTGAGCCTAGGATTAGCTTTGTTTTAGT
CAAACCCACCACCCAGAACCCCCACCCACTTTTCCCATGTTCGAATCGAG
CTAGTGACGAAGCAGTTAGAAAATCGCAGTTAACTATATAAAAAGAGCCA
GCTATTGAAAATTGAGGGACCACAGGCGGTTTCTTACTTCGTTTTTTTTT
TTCCAATTCAATTTTCAAAACACTTAACTCACAAACACGCTTCAATCGCG
ACAATAAAGAGATTAAATAAAAATTTAAATGAAAATGTTTGCTGCACTGC
GTCCCAATGAAGCCCCAAACAACAACAACAACAACAACAATAAGCAACAA
TAGCAACAAAAGCAACAACTTGATCAATATTCCGAGATTTCCCAGCACAA
GAGCTCCTCGTCCAGCGAACAGCGAACGGAAACCAAGTCCAAGGATGGCG
GTGCCACTGTGACCACAACGACAACAAAGGTTACCACACGCACTGTCAGC
GGAAGTGCTGCCTCCAAAAACATCTCACCCTTGGCTAAATTCAAGCAGCT
GGACAAACAGGCAGCCGCCCAGCAGGCGCAAAAATCATCTCCAACAACAA
GCACACCCACGACCCCCGGCGGTTCGGCACAACCGTTGTTCAAATTTACC
GATCCGGCATTAAATGCGCGCGCCGCCACTGTCAAGGATCAACTTCTGCA
GTGGTGTAAGCATAAAACGCAGGAATATGAGAACGTCCAAATAAACAACT
TTAGCTCGAGCTGGTCAGACGGCCTGGCCTTTTGTGCGCTGATACACCAT
TTCTTGCCAGATGCATTTGATTACACCACACTAACCAAGCAGACGCGACG
ACACAACTTTGAGCTGGCCTTCAGCGTTGCTGATGAGAAGGCTGGCATTG
CACCACTGCTGGATGTGGAGGACATGGTGGAGATGAGTCGTCCTGACTGG
AAATGCGTATTCGTCTACGTGCAGAGCATATATCGCCGATTCCGGAATTG
TCAGTGAGTAGAATTAAAGCAACCATCGAAATCAGCGGCAGCGGAAGCAG
CAGCAGCAGCAGCAGCAGAACAGTCCAAATCCAGATCCAAATCCAAGTCA
ACTCAACGGCAACAGCAGAAACTCATTAAATTTTAAGCACACACCATATA
CACATTATATACACATCCCCTTTGGCATTTTGTGTTTAGACACACCCCAT
GAATCCAGCATAAACCATTTGAATCCACAATAATCTATAATAATCCTACG
CCTATGTGGAAGCCACTCAAGAATCCGTCATCCTGCGAATATCTATCTAA
TTGTATAATCGGCATTATATGTATTGTATATTCTTCAACTGAAGCGCAAA
TGGCTCGTCGAACGTGAACAGCCGACTCTTTGTACGTTTTTTTGTGTTTG
TTTTACCCCTTTTTTACTATTATATTACGATTACGCATTATTATTTGTTA
TTATCGAACTTGAAGCAGAATCTATGCAAATAATTGTTGAATTATATATA
TTTTTTTTGTCATAATTTTAATTGCGGAGAAAGAAGATGCAGAGCAGTTA
CTAACCCCTGTCCGGCGGTCATCGACAATGGATTTAGTATATAAGATACG
TCCCGATGCCGTCGCTCACATTGATGAACTACTGTAATAATACACATATA
TTCTATGTACGTACGTGTAACGAGAACGAAACATTTACTAACCGATGCCA
AAATAAAATGGCCGCAAAGAAATAAAAAAAAAACAAACAAACAAATGAAA
CCCAAAAAAAAAAAAAAAAAA

GH02414.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG34417.a 3046 CG34417.a 1681..3045 1741..3105 6825 100 Plus
CG34417.e 2313 CG34417.e 944..2308 1741..3105 6825 100 Plus
CG34417.h 3969 CG34417.h 2604..3968 1741..3105 6825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6474556..6476301 1..1740 8590 99.6 Plus
chrX 22417052 chrX 6480591..6481458 2234..3103 4255 99.5 Plus
chrX 22417052 chrX 6480352..6480505 2080..2233 770 100 Plus
chrX 22417052 chrX 6479243..6479390 1934..2081 740 100 Plus
chrX 22417052 chrX 6478133..6478236 1830..1933 520 100 Plus
chrX 22417052 chrX 6477982..6478071 1741..1830 450 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6582283..6584022 1..1740 8700 100 Plus
X 23542271 X 6588304..6589175 2234..3105 4360 100 Plus
X 23542271 X 6588065..6588218 2080..2233 770 100 Plus
X 23542271 X 6586957..6587104 1934..2081 740 100 Plus
X 23542271 X 6585847..6585950 1830..1933 520 100 Plus
X 23542271 X 6585696..6585785 1741..1830 450 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6590381..6592120 1..1740 8700 100 Plus
X 23527363 X 6596402..6597273 2234..3105 4360 100 Plus
X 23527363 X 6596163..6596316 2080..2233 770 100 Plus
X 23527363 X 6595055..6595202 1934..2081 740 100 Plus
X 23527363 X 6593945..6594048 1830..1933 520 100 Plus
X 23527363 X 6593794..6593883 1741..1830 450 100 Plus
Blast to na_te.dros performed 2019-03-15 22:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6897 258..431 212 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6895 240..400 202 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2416 248..354 201 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6916 205..355 188 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6970 248..421 185 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2598..2981 1..355 183 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2315..2429 238..355 176 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2410 243..354 174 64.3 Plus
roo 9092 roo DM_ROO 9092bp 1036..1183 227..372 168 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2567 240..455 167 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2478 205..353 166 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6844 276..400 161 62.8 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 934..1065 1151..1284 151 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2315..2500 182..354 149 59.7 Plus
roo 9092 roo DM_ROO 9092bp 1030..1135 258..355 140 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6808 323..400 137 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1059..1137 324..399 135 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2408 305..400 133 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2663 1..360 133 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6775 305..355 133 77.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2741..2827 272..354 129 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2637 20..362 120 54.4 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 980..1022 322..364 116 74.4 Plus

GH02414.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:06:48 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6479243..6479390 1934..2081 100 -> Plus
chrX 6480354..6480505 2082..2233 100 -> Plus
chrX 6474556..6474815 1..260 100 == Plus
chrX 6474926..6476228 371..1667 96 == Plus
chrX 6476281..6476301 1720..1740 100 -> Plus
chrX 6477982..6478071 1741..1830 100 -> Plus
chrX 6478134..6478236 1831..1933 100 -> Plus
chrX 6480591..6481458 2234..3103 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:07:27 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RH 13872..14940 1..1069 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:18 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RJ 13872..14940 1..1069 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:08:15 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RL 13521..14589 1..1069 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:10 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RH 13872..14940 1..1069 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:43 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RW 13359..14427 1..1069 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:01:25 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RG 1..3098 1..3103 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:18 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RJ 14440..17542 1..3103 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:08:15 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RJ 14440..17542 1..3103 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:10 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RG 1..3098 1..3103 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:43 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
CG34417-RJ 14440..17542 1..3103 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:48 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
X 6582283..6584022 1..1740 100 -> Plus
X 6585696..6585785 1741..1830 100 -> Plus
X 6585848..6585950 1831..1933 100 -> Plus
X 6586957..6587104 1934..2081 100 -> Plus
X 6588067..6588218 2082..2233 100 -> Plus
X 6588304..6589173 2234..3103 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:48 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
X 6582283..6584022 1..1740 100 -> Plus
X 6585696..6585785 1741..1830 100 -> Plus
X 6585848..6585950 1831..1933 100 -> Plus
X 6586957..6587104 1934..2081 100 -> Plus
X 6588067..6588218 2082..2233 100 -> Plus
X 6588304..6589173 2234..3103 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:48 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
X 6582283..6584022 1..1740 100 -> Plus
X 6585696..6585785 1741..1830 100 -> Plus
X 6585848..6585950 1831..1933 100 -> Plus
X 6586957..6587104 1934..2081 100 -> Plus
X 6588067..6588218 2082..2233 100 -> Plus
X 6588304..6589173 2234..3103 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:08:15 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6482100..6482251 2082..2233 100 -> Plus
arm_X 6480990..6481137 1934..2081 100 -> Plus
arm_X 6476316..6478055 1..1740 100 -> Plus
arm_X 6479729..6479818 1741..1830 100 -> Plus
arm_X 6479881..6479983 1831..1933 100 -> Plus
arm_X 6482337..6483206 2234..3103 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:46 Download gff for GH02414.complete
Subject Subject Range Query Range Percent Splice Strand
X 6590381..6592120 1..1740 100 -> Plus
X 6593794..6593883 1741..1830 100 -> Plus
X 6593946..6594048 1831..1933 100 -> Plus
X 6595055..6595202 1934..2081 100 -> Plus
X 6596165..6596316 2082..2233 100 -> Plus
X 6596402..6597271 2234..3103 100   Plus

GH02414.hyp Sequence

Translation from 1 to 1068

> GH02414.hyp
NNHTTVQKQQKEQHINELRRKSLGNVLESSQRSTYFEQEYKSSAPPDTPD
IVKSSLPKEDAPLLKKFGPPQRHHYMPNSYQSPQLNKQGNSNSTTTSSTS
VRSTTVVQQQHHQQQHQQIKPSIVETPATPQPQVPPEDEIPHNIVFNNVS
AFTSMSRRNHEEDSHQGTQSGSRVNRLSKCDSWNQICQLQQTAGPSPAKY
NQPGSPGELRRTKSGHSLAVPKLYEAGIDKAQVSEKQRTVAAYFSGQKSP
TGGQVEELRTSMTTTTSSRKSAINRTKTSEKLSAAARKSLSSLTTTSNGN
VSTAGLGMVVRGGGVGGIGGGAALSRSATMPHIANLNLLDESNVEDAFEQ
LMMGA*

GH02414.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG34417-PW 4808 CG34417-PW 4454..4808 1..355 1825 100 Plus
CG34417-PL 4862 CG34417-PL 4508..4862 1..355 1825 100 Plus
CG34417-PX 4925 CG34417-PX 4571..4925 1..355 1825 100 Plus
CG34417-PU 4979 CG34417-PU 4625..4979 1..355 1825 100 Plus
CG34417-PJ 4979 CG34417-PJ 4625..4979 1..355 1825 100 Plus

GH02414.pep Sequence

Translation from 226 to 1068

> GH02414.pep
MPNSYQSPQLNKQGNSNSTTTSSTSVRSTTVVQQQHHQQQHQQIKPSIVE
TPATPQPQVPPEDEIPHNIVFNNVSAFTSMSRRNHEEDSHQGTQSGSRVN
RLSKCDSWNQICQLQQTAGPSPAKYNQPGSPGELRRTKSGHSLAVPKLYE
AGIDKAQVSEKQRTVAAYFSGQKSPTGGQVEELRTSMTTTTSSRKSAINR
TKTSEKLSAAARKSLSSLTTTSNGNVSTAGLGMVVRGGGVGGIGGGAALS
RSATMPHIANLNLLDESNVEDAFEQLMMGA*

GH02414.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG34417-PW 4808 CG34417-PW 4529..4808 1..280 1428 100 Plus
CG34417-PL 4862 CG34417-PL 4583..4862 1..280 1428 100 Plus
CG34417-PX 4925 CG34417-PX 4646..4925 1..280 1428 100 Plus
CG34417-PU 4979 CG34417-PU 4700..4979 1..280 1428 100 Plus
CG34417-PJ 4979 CG34417-PJ 4700..4979 1..280 1428 100 Plus
CG34417-PH 4979 CG34417-PH 4700..4979 1..280 1428 100 Plus
CG34417-PT 5182 CG34417-PT 4700..4977 1..278 1418 100 Plus
CG34417-PR 5128 CG34417-PR 4700..4922 1..223 1143 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12498-PA 1947 GM12498-PA 1673..1947 1..280 1406 95.7 Plus