Clone GH02439 Report

Search the DGRC for GH02439

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:24
Well:39
Vector:pOT2
Associated Gene/TranscriptCG2082-RG
Protein status:GH02439.pep: gold
Preliminary Size:1862
Sequenced Size:1897

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2082 2000-02-14 Blastp of sequenced clone
CG2082 2008-04-29 Release 5.5 accounting
CG2082 2008-08-15 Release 5.9 accounting
CG2082 2008-12-18 5.12 accounting

Clone Sequence Records

GH02439.complete Sequence

1897 bp (1897 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145604

> GH02439.complete
GCGTTCGAAGATTGCGCATTCGTTCAGAAACGCGGTTCCGCCCGATTCGC
ATCCGATTTCGGTTTCCATCCTCGAGTGCTGCTGTGCGCCTGATAGAGCC
CCGTTCGAGCCACGCTTGTGTGTCCCGCAGTTCCTTTGAGCAACCCAGTG
AAGTGAAGCTACCGTCGCCCGAATCCCACACCATGTCGAAGCCGGGAACC
CCCAAGCACGGCGCCGGCTCATCCTCAGCAGCTGCTGCCCCCGAGAAGAT
TAGCAAATACAATATCAGCACAGAGAAATGCGGGGATCTGACGGTCATAG
TGCAGGGCGACCTGTCACAGCAGGAGAAACGCGCCGTGTTCATAACGGTT
CACGACCTGGGCTGCAACCACAACTCATTCCAGGAGTTCGTGAGCAGTCC
CTGCATGACGGAGATCAAGGAGCGCTCCTGCTTCATCCACGTGGACGTGC
CGGGGCACGCGGACAACGCGGAGGCCCTGGCTGACGGCTTTCCGTTTCCC
TCGCTCCAGTCCCTGGGCGAGGACCTGGTCACCGTGCTGGACTACCTGCA
CGTAAAGTACGTGATCGGCCTAGGCGAGGGTGCCGGAGCCAATGTCCTGG
CCCGCTTCGGACTGGCCCATCCCAGCCGGGTGCTGGGCCTCATCCTGATC
AACGCGACTGGCAGCGCCGCCAGTGTAGTGCAGTCCTTCAAGAACAAGTT
CATTAGCTGGAAGAGCGACGAGGTGGCCCAGTCGGCTGAGAGCTTTCTGA
TGTACCACAAATTCGGACATGTTATGGAGCAAATCGTGGGCGAGAATCCG
GACAAGGAGAAGATCGTGGCCGAGTACCAGAAGCGTCTTCACCGATCCCT
AAACAGCAAGAACATCGGTCTCTATGTCAAAGCATTTATGAATCGCAAGG
ACCTTACGCTCAAGGGCTGCAAGGTAGATGTCATCCTGATCACGGGCATG
CTCAGCCCCTATGCGTCCATGGTCGAGAAGCTCCATCGCGACGTGGAGAA
GGAGAGGGTCACCATTCTGAAGATCGAGCGGGCTGGCGATGTCCTCGCCG
ATGCTCCCGGAAAGGTGGCCCAATCCATTCTGCTGTTCTGCAAGGGACAG
GGGCTGCTCACGTCGGTGGTGATGCCAGGCGTGGATCGCGGACGCGCCTT
CTCCACGGCTAGCTCCGGATCGCTGGAGGGGGCCAACGGATCGCGGCGCC
TGTCGCGCGGCATCTCGATGGAGGATTATGACAAGCCCAACATCCGCCGG
CTCAGCATCATGAACAGTGAGTTGCCCAAGAAGGAGTAAATTAGACGAGA
CCACGCCACGCCCACGTTGGTAGATTAAGCTTGATTGCGTATTTAAACTA
CTTAAACTGGTAAAATACCTTTAGTCTGAGCAAAACGTATATGTGTGAAC
CCAGAGCCAAACAATCATCCCAAGTGTAACCGCTTTTCCGCGGATTTTAG
GCCAAATTCTAATTAGTAATCGCTTAAAGTTTTTAAAGAGTAGCAAACCC
AACAACAACACATTGACCATCCGAATCCGAATGGACGGAAATAAGCCGAA
AACTGTATTTACACTGTGTACTTAGGATTAGTCTTATGTATGTAACCCCA
AGAAGCCCACCTAAGAATCTGAAACAATGTTCAAACATCCATATCTAAAT
CTTCAACTCGACCGAACTTATCACAACTGCTAAACACGAACTATAAAACG
CAATCTATTTAATACCTCCGAATAGTAAACTGTACCTAAACACGTAGAAA
CTAGAATGGAAAAATCCCAAATGTTACTCCTCTACTCTGTCACCCTTCAA
CTTTCTAAACTTTCTATAGTGAACAGTCTCAAATGTTGCTATTTTAGTAA
ATAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH02439.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2082.c 2160 CG2082.c 1..1871 1..1871 9325 99.8 Plus
CG2082-RG 1858 CG2082-RG 2..1858 1..1857 9285 100 Plus
CG2082.b 2163 CG2082.b 783..1874 780..1871 5430 99.8 Plus
CG2082.b 2163 CG2082.b 13..782 1..770 3850 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1585217..1586018 1857..1056 4010 100 Minus
chr3R 27901430 chr3R 1587819..1588147 698..370 1645 100 Minus
chr3R 27901430 chr3R 1597277..1597530 254..1 1270 100 Minus
chr3R 27901430 chr3R 1586277..1586439 1055..893 815 100 Minus
chr3R 27901430 chr3R 1586496..1586610 892..778 575 100 Minus
chr3R 27901430 chr3R 1587291..1587366 772..697 380 100 Minus
chr3R 27901430 chr3R 1588204..1588269 369..304 330 100 Minus
chr3R 27901430 chr3R 1588351..1588402 306..255 260 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5759556..5760371 1871..1056 4050 99.8 Minus
3R 32079331 3R 5762172..5762500 698..370 1645 100 Minus
3R 32079331 3R 5771630..5771883 254..1 1270 100 Minus
3R 32079331 3R 5760630..5760792 1055..893 815 100 Minus
3R 32079331 3R 5760849..5760963 892..778 575 100 Minus
3R 32079331 3R 5761644..5761719 772..697 380 100 Minus
3R 32079331 3R 5762557..5762622 369..304 330 100 Minus
3R 32079331 3R 5762704..5762755 306..255 260 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5500387..5501202 1871..1056 4050 99.7 Minus
3R 31820162 3R 5503003..5503331 698..370 1645 100 Minus
3R 31820162 3R 5512461..5512714 254..1 1270 100 Minus
3R 31820162 3R 5501461..5501623 1055..893 815 100 Minus
3R 31820162 3R 5501680..5501794 892..778 575 100 Minus
3R 31820162 3R 5502475..5502550 772..697 380 100 Minus
3R 31820162 3R 5503388..5503453 369..304 330 100 Minus
3R 31820162 3R 5503535..5503586 306..255 260 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:57:35 has no hits.

GH02439.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:59:03 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1588352..1588402 255..305 100 <- Minus
chr3R 1586277..1586439 893..1055 100 <- Minus
chr3R 1586496..1586608 780..892 100 <- Minus
chr3R 1587283..1587364 699..779 95 <- Minus
chr3R 1587819..1588147 370..698 100 <- Minus
chr3R 1588204..1588267 306..369 100 <- Minus
chr3R 1585217..1586018 1056..1857 100 <- Minus
chr3R 1597277..1597530 1..254 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:28:29 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 55..1095 248..1289 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:32:40 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RG 1..1107 183..1289 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:04:38 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RG 1..1107 183..1289 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:07:05 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 55..1095 248..1289 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:12 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RG 1..1107 183..1289 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:28:29 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 374..1982 248..1857 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:32:40 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RG 1..1857 1..1857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:04:38 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RG 16..1872 1..1857 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:07:05 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 374..1982 248..1857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:12 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RG 16..1872 1..1857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:59:03 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5762557..5762620 306..369 100 <- Minus
3R 5762705..5762755 255..305 100 <- Minus
3R 5761636..5761717 699..779 95 <- Minus
3R 5762172..5762500 370..698 100 <- Minus
3R 5759570..5760371 1056..1857 100 <- Minus
3R 5760630..5760792 893..1055 100 <- Minus
3R 5760849..5760961 780..892 100 <- Minus
3R 5771630..5771883 1..254 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:59:03 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5762557..5762620 306..369 100 <- Minus
3R 5762705..5762755 255..305 100 <- Minus
3R 5761636..5761717 699..779 95 <- Minus
3R 5762172..5762500 370..698 100 <- Minus
3R 5759570..5760371 1056..1857 100 <- Minus
3R 5760630..5760792 893..1055 100 <- Minus
3R 5760849..5760961 780..892 100 <- Minus
3R 5771630..5771883 1..254 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:59:03 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5762557..5762620 306..369 100 <- Minus
3R 5762705..5762755 255..305 100 <- Minus
3R 5761636..5761717 699..779 95 <- Minus
3R 5762172..5762500 370..698 100 <- Minus
3R 5759570..5760371 1056..1857 100 <- Minus
3R 5760630..5760792 893..1055 100 <- Minus
3R 5760849..5760961 780..892 100 <- Minus
3R 5771630..5771883 1..254 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:04:38 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1588427..1588477 255..305 100 <- Minus
arm_3R 1585292..1586093 1056..1857 100 <- Minus
arm_3R 1586352..1586514 893..1055 100 <- Minus
arm_3R 1586571..1586683 780..892 100 <- Minus
arm_3R 1587358..1587439 699..779 95 <- Minus
arm_3R 1587894..1588222 370..698 100 <- Minus
arm_3R 1588279..1588342 306..369 100 <- Minus
arm_3R 1597352..1597605 1..254 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:44:40 Download gff for GH02439.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5500401..5501202 1056..1857 100 <- Minus
3R 5501461..5501623 893..1055 100 <- Minus
3R 5501680..5501792 780..892 100 <- Minus
3R 5502467..5502548 699..779 95 <- Minus
3R 5503003..5503331 370..698 100 <- Minus
3R 5503388..5503451 306..369 100 <- Minus
3R 5503536..5503586 255..305 100 <- Minus
3R 5512461..5512714 1..254 100   Minus

GH02439.hyp Sequence

Translation from 2 to 1161

> GH02439.hyp
VRRLRIRSETRFRPIRIRFRFPSSSAAVRLIEPRSSHACVSRSSFEQPSE
VKLPSPESHTMSKPGTPKHGAGSSSAAAAPEKISKYNISTEKCGDLTVIV
QGDLSQQEKRAVFITVHDLGCNHNSFQEFVSSPCMTEIKERSCFIHVDVP
GHADNAEALADGFPFPSLQSLGEDLVTVLDYLHVKYVIGLGEGAGANVLA
RFGLAHPSRVLGLILINATGSAASVVQSFKNKFISWKSDEVAQSAESFLM
YHKFGHVSSANRGRESGQGEDRGRVPEASSPIPKQQEHRSLCQSIYESQG
PYAQGLQGRCHPDHGHAQPLCVHGREAPSRRGEGEGHHSEDRAGWRCPRR
CSRKGGPIHSAVLQGTGAAHVGGDARRGSRTRLLHG*

GH02439.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2082-PG 368 CG2082-PG 1..197 61..257 1019 100 Plus
CG2082-PD 201 CG2082-PD 1..196 61..256 1015 100 Plus
CG2082-PA 365 CG2082-PA 1..196 61..256 1015 100 Plus
CG2082-PM 211 CG2082-PM 30..211 85..266 910 96.7 Plus
CG2082-PN 197 CG2082-PN 21..192 85..256 894 100 Plus

GH02439.pep Sequence

Translation from 182 to 1288

> GH02439.pep
MSKPGTPKHGAGSSSAAAAPEKISKYNISTEKCGDLTVIVQGDLSQQEKR
AVFITVHDLGCNHNSFQEFVSSPCMTEIKERSCFIHVDVPGHADNAEALA
DGFPFPSLQSLGEDLVTVLDYLHVKYVIGLGEGAGANVLARFGLAHPSRV
LGLILINATGSAASVVQSFKNKFISWKSDEVAQSAESFLMYHKFGHVMEQ
IVGENPDKEKIVAEYQKRLHRSLNSKNIGLYVKAFMNRKDLTLKGCKVDV
ILITGMLSPYASMVEKLHRDVEKERVTILKIERAGDVLADAPGKVAQSIL
LFCKGQGLLTSVVMPGVDRGRAFSTASSGSLEGANGSRRLSRGISMEDYD
KPNIRRLSIMNSELPKKE*

GH02439.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18647-PA 370 GF18647-PA 1..370 1..368 1915 97 Plus
Dana\GF12819-PA 448 GF12819-PA 127..419 21..307 400 31.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10854-PA 367 GG10854-PA 1..367 1..368 1923 98.4 Plus
Dere\GG22116-PA 570 GG22116-PA 128..442 21..328 412 31.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19438-PA 362 GH19438-PA 1..362 1..368 1770 90.2 Plus
Dgri\GH21835-PA 450 GH21835-PA 129..421 21..307 400 31.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2082-PG 368 CG2082-PG 1..368 1..368 1874 100 Plus
CG2082-PA 365 CG2082-PA 1..365 1..368 1846 99.2 Plus
CG2082-PK 364 CG2082-PK 21..364 25..368 1753 100 Plus
CG2082-PB 364 CG2082-PB 21..364 25..368 1753 100 Plus
CG2082-PJ 361 CG2082-PJ 21..361 25..368 1725 99.1 Plus
CG2082-PC 361 CG2082-PC 21..361 25..368 1725 99.1 Plus
CG2082-PL 363 CG2082-PL 21..363 25..368 1723 99.1 Plus
CG2082-PH 363 CG2082-PH 21..363 25..368 1723 99.1 Plus
CG2082-PO 335 CG2082-PO 1..286 75..363 1425 98.3 Plus
CG2082-PD 201 CG2082-PD 1..196 1..196 1015 100 Plus
CG2082-PM 211 CG2082-PM 30..204 25..199 908 100 Plus
CG2082-PN 197 CG2082-PN 21..192 25..196 894 100 Plus
MESK2-PJ 468 CG15669-PJ 27..341 21..328 386 32.3 Plus
MESK2-PI 485 CG15669-PI 44..358 21..328 386 32.3 Plus
MESK2-PD 365 CG15669-PD 44..361 21..332 384 31.4 Plus
MESK2-PE 447 CG15669-PE 126..443 21..332 384 31.4 Plus
MESK2-PF 447 CG15669-PF 126..443 21..332 384 31.4 Plus
MESK2-PA 447 CG15669-PA 126..443 21..332 384 31.4 Plus
MESK2-PB 425 CG15669-PB 126..421 21..310 379 32.4 Plus
MESK2-PK 409 CG15669-PK 98..390 21..307 378 32.7 Plus
MESK2-PC 437 CG15669-PC 126..418 21..307 378 32.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22641-PA 361 GI22641-PA 1..361 1..368 1739 89.1 Plus
Dmoj\GI19078-PA 549 GI19078-PA 129..443 21..328 412 31.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23012-PA 368 GL23012-PA 1..368 1..368 1900 96.2 Plus
Dper\GL16980-PA 563 GL16980-PA 139..453 21..328 414 31.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15229-PA 368 GA15229-PA 1..368 1..368 1868 95.9 Plus
Dpse\GA15229-PB 365 GA15229-PB 1..365 1..368 1835 95.1 Plus
Dpse\GA25012-PD 470 GA25012-PD 44..358 21..328 415 31.5 Plus
Dpse\GA25012-PE 453 GA25012-PE 27..341 21..328 414 31.5 Plus
Dpse\GA25012-PG 365 GA25012-PG 44..336 21..307 404 31.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10591-PA 383 GM10591-PA 16..383 1..368 1954 99.7 Plus
Dsec\GM15838-PA 447 GM15838-PA 126..418 21..307 401 31.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19583-PA 368 GD19583-PA 1..368 1..368 1960 100 Plus
Dsim\GD11599-PA 536 GD11599-PA 126..440 21..328 411 31.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23888-PA 360 GJ23888-PA 1..360 1..368 1796 92.4 Plus
Dvir\GJ20053-PA 553 GJ20053-PA 131..445 21..328 403 31.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13862-PA 388 GK13862-PA 22..388 1..368 1846 94.6 Plus
Dwil\GK20902-PA 562 GK20902-PA 134..448 21..328 409 31.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24139-PA 368 GE24139-PA 1..368 1..368 1934 98.4 Plus
Dyak\GE12198-PA 429 GE12198-PA 130..425 21..310 400 31.2 Plus