Clone GH02452 Report

Search the DGRC for GH02452

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:24
Well:52
Vector:pOT2
Associated Gene/TranscriptS-Lap3-RB
Protein status:GH02452.pep: gold
Preliminary Size:2228
Sequenced Size:2281

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8040 2001-01-01 Release 2 assignment
CG32063 2001-07-04 Blastp of sequenced clone
CG32063 2003-01-01 Sim4 clustering to Release 3
CG32063 2008-04-29 Release 5.5 accounting
CG32063 2008-08-15 Release 5.9 accounting
CG32063 2008-12-18 5.12 accounting

Clone Sequence Records

GH02452.complete Sequence

2281 bp (2281 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047518

> GH02452.complete
ATTTTAGCAACGAAAGCAGACAACACATTTCGTTCGTTCCTTTTTTAAAT
ATACATTTTACGTTCGCACATGAAACATTTTTGAAACATTTTCTCTTTTT
TTTTTTTTTTTGGACACCTGACAAAACTTTTGAACGTGGCTGGTCAAAAT
TATTAGAGACAGTTCGAGAGACCAACATACATACACTTCGAGAGTTGCCG
TAAATTGTAAAAACACACAACAGTCGTCAAAATTGTGCAGATAATAGCTC
GCGTATATAGTGCGGTAAACATAATAATACTATATACTATGCGTGGACAA
CTGTTGCTGAAGGGACCCGCATTGGCGAGGAGCTTGAGCCGGTGCCGCGT
AAGTGCCGTGCCCCAAATTGGATCTGTTCGTCATGTGACCGCCGGCTGTG
CAGCTGGTGATACCGTCAAGGGCGGCAAAGGAATCGTCTTGGGCCTCTAC
GAAAAGGAGTCGGGCAAGGGACCTCGATTAACGCCTGCTGGCGAAAAGTT
TGACGATCGTGTGCAGGGCAAGCTATCGGAATTGGTTTGCGAAACCAAAT
TAACTGGACGATTGGGTCGCGGCAAGGTCTTCAACAATGTGGACAGCGAG
TTCAGATCCATTTGCGTGGTGGGCGTTGGTCTCGAAGGCATAGCCTTTAA
TGAACTGGAAATGCTGGACGAGGGTATGGAGAATGTGCGCATAGCTGCTG
GAATCGGTGCCCGATCATTACAAAGTATTGGCTGCTCGGAAGTGCATGTG
GATAATATGGACTATGCCGAACAGGCAGCCGAAGGTGCTGCACTGGCCAT
TTGGCGATATGAGGAGAATCTGGCGAAGAAGTATCGTAGCACTATACCGA
AACTGGAGCTGCATGGTTCACCGGATGTCGAGTCCTGGACAAGGGGCCTC
TTCAAGGCAGAGGCACAGAATTTGGCCAGAAGACTGTGTGATGCCCCAGC
CAATTGTATGACACCGACAATTGTGGCACAGGCTGCAGTGGATTCACTAT
GCCCATGCGGCATCACCGTAGAGGTTCGCACCATGGAATGGATTGAACAG
CAACATCTGAACTCCTTCCTGATGATTGCCAAAGGCAGTTGCGAACCACC
CGTTCTCCTTGAGGTGGCCTATTGCGGCACCGCACCGGAAGATAAGCCCA
TTCTGCTGGTGGGTCAAGGCATAACCTTCAATTCAGGTGGCATCAATCTG
CGTCCTTGCAAGGGCATGGATGAATTCCGCGGAGATCTCACTGGAGCGGC
ATGCATTTTGGCCGCCATGCGCGCAGCAGCTGCTCTATCTTTGCCCATCA
ATATAACTGCTGTGATACCACTGTGCGAGAATCTGCCGTCTGGAATGTCC
TGCAAGCCTGGCGATGTGGTGACCTTACTCAATTCCAAATCTCTGGCGGT
GCGTAATATAAGTCGAACAGGAGTGGTGGTCATCTCGGATCCCATGCTTT
ATGGTCAGATAACATACAAGCCCAGACTCGTCGTGGATGTGGGCTCCATG
TGCAAGGGCGTAAAGAAGGCAGTTGGCGGTGGAGCCACTGGTATTTGGTC
GAATTCTCACTATATATGGAAACAATTCCAGCGTGCCGGTTCCTTGACCG
GTGATCGCTTGTGGCGATTCCCCTTATGGCGCTACTACAAGGATCGTGTG
GCAGAGCACCTGAGCTTCGACCTACTGAACGATGGCGAGGGATATGCCTC
GTCTTGCCTGGCAGCTGCTGTTCTCCACGAACTCGTGCCCTGCAGCGATT
GGGCCCATTTGGATACCTATGGTACTGGACTATTGAGCACATATGGATTG
ATACCCTACTTGACAGCTGGCAGGATGACTGGCAGACCGACCAGGACATT
GGTGCAGTTCCTCTACCAAATCGCCTGCCCCGAACAGCCTAAATAATTGA
TGTTCTGCGGATGACTTCGATTACGTTTTGATTGGTTCTTTGACTGGCGA
CTCTTAAAGGCTCTCGAAAAATGGATGTTCGGCTCCAACTGTGTATATTT
ATGATGTGGGTTGACGATGTTCACCCAACGTTTTAATCTGTTGACCAAAG
TCCCAGGACAAGGGACCAGAGCTCGTTCAATGTTTGTATTTTATGTTTAT
GACTCGGCCGCATCCCGGGGCTGAGTTGGCTGGCAGAGATTGTCTAGCGT
CCAAAAAAAATTCAAATTCACACAGGAAAATCATTGTATCAATCAATTAT
AAACGTTCGGCAGACAATCAAATGTAATAAATTGTAGGGTCATCTTAAAG
GAACGATAAAAAAAAAAAAAAAAAAAAAAAA

GH02452.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32063-RB 2682 CG32063-RB 316..2575 1..2259 11260 99.9 Plus
CG32063-RA 2336 CG32063-RA 79..2336 1..2257 11250 99.9 Plus
CG32063.a 2465 CG32063.a 612..2465 404..2257 9270 100 Plus
CG32063.a 2465 CG32063.a 263..611 1..348 1705 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 10457652..10459906 1..2257 11095 99.6 Plus
chr3L 24539361 chr3L 10482748..10483850 479..1581 655 71 Plus
chr2R 21145070 chr2R 9665960..9667020 1616..556 625 70.6 Minus
chr2R 21145070 chr2R 9484724..9485042 845..1163 410 75.2 Plus
chr2R 21145070 chr2R 12379187..12379812 745..1370 310 70 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:27:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10466223..10468482 1..2259 11250 100 Plus
3L 28110227 3L 10491331..10492433 479..1581 640 71 Plus
2R 25286936 2R 13778636..13779696 1616..556 640 70.7 Minus
2R 25286936 2R 13597423..13597741 845..1163 410 75.2 Plus
2R 25286936 2R 16491861..16492486 745..1370 295 69.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 10459323..10461582 1..2259 11260 99.9 Plus
3L 28103327 3L 10484838..10485152 886..1200 420 75.5 Plus
2R 25260384 2R 13598622..13598940 845..1163 410 75.2 Plus
3L 28103327 3L 10484568..10484762 616..810 360 78.9 Plus
2R 25260384 2R 13780228..13780387 1223..1064 320 80 Minus
2R 25260384 2R 13780770..13780895 681..556 300 82.5 Minus
2R 25260384 2R 13780408..13780580 1043..871 295 78 Minus
2R 25260384 2R 16493348..16493454 1033..1139 190 78.5 Plus
2R 25260384 2R 16493574..16493685 1259..1370 185 77.6 Plus
3L 28103327 3L 10485273..10485359 1321..1407 165 79.3 Plus
2R 25260384 2R 16493199..16493242 884..927 145 88.6 Plus
Blast to na_te.dros performed on 2019-03-16 23:54:57 has no hits.

GH02452.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:55:39 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 10457652..10459906 1..2257 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:07:47 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
CG32063-RA 1..1608 289..1896 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:09 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
CG32063-RB 1..1608 289..1896 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:53:27 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 1..1608 289..1896 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:37 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
CG32063-RA 1..1608 289..1896 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:45 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 1..1608 289..1896 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:51 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
CG32063-RA 79..2336 1..2257 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:09 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
CG32063-RB 263..2520 1..2257 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:27 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 263..2520 1..2257 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:38 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
CG32063-RA 79..2336 1..2257 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:45 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 263..2520 1..2257 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:39 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10466223..10468480 1..2257 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:39 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10466223..10468480 1..2257 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:39 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10466223..10468480 1..2257 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:27 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10459323..10461580 1..2257 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:42 Download gff for GH02452.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10459323..10461580 1..2257 99   Plus

GH02452.pep Sequence

Translation from 288 to 1895

> GH02452.pep
MRGQLLLKGPALARSLSRCRVSAVPQIGSVRHVTAGCAAGDTVKGGKGIV
LGLYEKESGKGPRLTPAGEKFDDRVQGKLSELVCETKLTGRLGRGKVFNN
VDSEFRSICVVGVGLEGIAFNELEMLDEGMENVRIAAGIGARSLQSIGCS
EVHVDNMDYAEQAAEGAALAIWRYEENLAKKYRSTIPKLELHGSPDVESW
TRGLFKAEAQNLARRLCDAPANCMTPTIVAQAAVDSLCPCGITVEVRTME
WIEQQHLNSFLMIAKGSCEPPVLLEVAYCGTAPEDKPILLVGQGITFNSG
GINLRPCKGMDEFRGDLTGAACILAAMRAAAALSLPINITAVIPLCENLP
SGMSCKPGDVVTLLNSKSLAVRNISRTGVVVISDPMLYGQITYKPRLVVD
VGSMCKGVKKAVGGGATGIWSNSHYIWKQFQRAGSLTGDRLWRFPLWRYY
KDRVAEHLSFDLLNDGEGYASSCLAAAVLHELVPCSDWAHLDTYGTGLLS
TYGLIPYLTAGRMTGRPTRTLVQFLYQIACPEQPK*

GH02452.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10595-PA 535 GF10595-PA 1..535 1..535 2594 91.4 Plus
Dana\GF10596-PA 522 GF10596-PA 17..522 24..535 2068 72.3 Plus
Dana\GF11165-PA 529 GF11165-PA 10..527 15..532 1994 69.6 Plus
Dana\GF13602-PA 531 GF13602-PA 47..530 47..530 1724 64.5 Plus
Dana\GF13707-PA 550 GF13707-PA 63..548 47..532 1701 64.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15436-PA 535 GG15436-PA 1..535 1..535 2812 98.5 Plus
Dere\GG22472-PA 528 GG22472-PA 13..526 17..532 2011 70.7 Plus
Dere\GG15437-PA 523 GG15437-PA 26..523 38..535 2007 72.5 Plus
Dere\GG20609-PA 534 GG20609-PA 50..533 47..530 1721 63.2 Plus
Dere\GG20395-PA 552 GG20395-PA 64..550 47..532 1699 64.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14946-PA 528 GH14946-PA 25..528 32..535 2419 87.9 Plus
Dgri\GH14947-PA 522 GH14947-PA 16..522 29..535 2015 70.9 Plus
Dgri\GH20870-PA 532 GH20870-PA 47..530 49..532 1987 71.9 Plus
Dgri\GH21028-PA 554 GH21028-PA 38..553 26..533 1711 61.8 Plus
Dgri\GH21239-PA 516 GH21239-PA 33..515 48..530 1620 61.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap3-PD 535 CG32063-PD 1..535 1..535 2802 100 Plus
S-Lap3-PC 535 CG32063-PC 1..535 1..535 2802 100 Plus
S-Lap3-PB 535 CG32063-PB 1..535 1..535 2802 100 Plus
S-Lap7-PB 527 CG13340-PB 10..525 15..532 1989 70.8 Plus
S-Lap7-PA 527 CG13340-PA 10..525 15..532 1989 70.8 Plus
S-Lap4-PA 524 CG32064-PA 27..524 38..535 1961 71.3 Plus
S-Lap8-PA 534 CG4439-PA 50..533 47..530 1742 63 Plus
S-Lap5-PA 549 CG18369-PA 61..547 47..532 1727 64.9 Plus
loopin-1-PC 526 CG4750-PC 27..524 27..530 1592 57.7 Plus
loopin-1-PA 526 CG4750-PA 27..524 27..530 1592 57.7 Plus
S-Lap2-PA 552 CG32351-PA 51..545 47..532 950 39.7 Plus
S-Lap1-PA 555 CG6372-PA 54..548 47..532 944 39.5 Plus
grsm-PB 558 CG7340-PB 221..452 209..441 213 26.6 Plus
grsm-PF 655 CG7340-PF 318..549 209..441 213 26.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11471-PA 526 GI11471-PA 1..526 6..535 2412 84.3 Plus
Dmoj\GI20978-PA 524 GI20978-PA 43..522 53..532 1909 71 Plus
Dmoj\GI11473-PA 521 GI11473-PA 33..519 46..532 1882 66.1 Plus
Dmoj\GI18629-PA 551 GI18629-PA 41..550 21..533 1771 61 Plus
Dmoj\GI20526-PA 525 GI20526-PA 41..524 47..530 1714 60.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25760-PA 529 GL25760-PA 4..527 9..531 2284 79.4 Plus
Dper\GL21275-PA 529 GL21275-PA 28..527 31..531 2262 81.2 Plus
Dper\GL17001-PA 524 GL17001-PA 21..522 30..532 1979 70.6 Plus
Dper\GL15464-PA 478 GL15464-PA 15..477 22..533 1728 62.9 Plus
Dper\GL10971-PA 524 GL10971-PA 37..523 47..533 1719 62.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25432-PA 529 GA25432-PA 4..527 9..531 2280 79.4 Plus
Dpse\GA22466-PA 529 GA22466-PA 4..527 9..531 2280 79.4 Plus
Dpse\GA28789-PA 529 GA28789-PA 28..527 31..531 2257 81.2 Plus
Dpse\GA12219-PA 524 GA12219-PA 21..522 30..532 1983 70.8 Plus
Dpse\GA16651-PA 521 GA16651-PA 9..520 16..533 1961 68.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25211-PA 535 GM25211-PA 1..535 1..535 2823 99.3 Plus
Dsec\GM25212-PA 524 GM25212-PA 27..524 38..535 1982 71.3 Plus
Dsec\GM20256-PA 525 GM20256-PA 10..523 15..532 1789 64.1 Plus
Dsec\GM21704-PA 534 GM21704-PA 50..533 47..530 1716 63 Plus
Dsec\GM21706-PA 526 GM21706-PA 8..524 15..530 1627 56.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14243-PA 525 GD14243-PA 1..525 1..535 2749 97.4 Plus
Dsim\GD25742-PA 527 GD25742-PA 10..525 15..532 2010 70.5 Plus
Dsim\GD14244-PA 510 GD14244-PA 27..510 38..535 1909 69.3 Plus
Dsim\GD10979-PA 549 GD10979-PA 61..547 47..532 1708 64.7 Plus
Dsim\GD11203-PA 526 GD11203-PA 8..524 15..530 1622 56.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13663-PA 535 GJ13663-PA 4..535 1..535 2402 85.1 Plus
Dvir\GJ13666-PA 521 GJ13666-PA 16..520 24..533 2002 69.2 Plus
Dvir\GJ20697-PA 523 GJ20697-PA 42..521 53..532 1983 71.9 Plus
Dvir\GJ21638-PA 553 GJ21638-PA 73..552 54..533 1726 63.3 Plus
Dvir\GJ22376-PA 494 GJ22376-PA 10..493 47..530 1587 60.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24050-PA 534 GK24050-PA 3..534 1..535 2460 87.3 Plus
Dwil\GK12271-PA 523 GK12271-PA 14..523 21..535 2056 71.8 Plus
Dwil\GK17945-PA 527 GK17945-PA 20..525 27..532 2017 71.9 Plus
Dwil\GK15975-PA 551 GK15975-PA 64..550 47..533 1734 63.9 Plus
Dwil\GK21700-PA 539 GK21700-PA 49..537 44..532 1666 59.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21746-PA 535 GE21746-PA 1..535 1..535 2807 98.3 Plus
Dyak\GE13342-PA 527 GE13342-PA 10..525 15..532 2014 70.5 Plus
Dyak\GE21747-PA 523 GE21747-PA 26..523 38..535 2005 72.7 Plus
Dyak\GE11799-PA 534 GE11799-PA 50..533 47..530 1711 62.8 Plus
Dyak\GE12557-PA 552 GE12557-PA 64..550 47..532 1704 64.9 Plus

GH02452.hyp Sequence

Translation from 288 to 1895

> GH02452.hyp
MRGQLLLKGPALARSLSRCRVSAVPQIGSVRHVTAGCAAGDTVKGGKGIV
LGLYEKESGKGPRLTPAGEKFDDRVQGKLSELVCETKLTGRLGRGKVFNN
VDSEFRSICVVGVGLEGIAFNELEMLDEGMENVRIAAGIGARSLQSIGCS
EVHVDNMDYAEQAAEGAALAIWRYEENLAKKYRSTIPKLELHGSPDVESW
TRGLFKAEAQNLARRLCDAPANCMTPTIVAQAAVDSLCPCGITVEVRTME
WIEQQHLNSFLMIAKGSCEPPVLLEVAYCGTAPEDKPILLVGQGITFNSG
GINLRPCKGMDEFRGDLTGAACILAAMRAAAALSLPINITAVIPLCENLP
SGMSCKPGDVVTLLNSKSLAVRNISRTGVVVISDPMLYGQITYKPRLVVD
VGSMCKGVKKAVGGGATGIWSNSHYIWKQFQRAGSLTGDRLWRFPLWRYY
KDRVAEHLSFDLLNDGEGYASSCLAAAVLHELVPCSDWAHLDTYGTGLLS
TYGLIPYLTAGRMTGRPTRTLVQFLYQIACPEQPK*

GH02452.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap3-PD 535 CG32063-PD 1..535 1..535 2802 100 Plus
S-Lap3-PC 535 CG32063-PC 1..535 1..535 2802 100 Plus
S-Lap3-PB 535 CG32063-PB 1..535 1..535 2802 100 Plus
S-Lap7-PB 527 CG13340-PB 10..525 15..532 1989 70.8 Plus
S-Lap7-PA 527 CG13340-PA 10..525 15..532 1989 70.8 Plus